Wall clock time and date at job start Fri Apr 10 2020 14:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46549 * 2 1 4 4 O 1.42901 * 109.47210 * 240.00594 * 2 1 3 5 5 C 1.42894 * 113.99863 * 225.69861 * 4 2 1 6 6 C 1.53002 * 110.45342 * 293.22986 * 5 4 2 7 7 S 1.81400 * 109.47371 * 295.24993 * 6 5 4 8 8 O 1.42100 * 110.54332 * 291.62623 * 7 6 5 9 9 O 1.42100 * 110.54467 * 68.37381 * 7 6 5 10 10 N 1.65595 * 104.45194 * 180.02562 * 7 6 5 11 11 C 1.46508 * 120.00138 * 64.99816 * 10 7 6 12 12 C 1.52996 * 109.46947 * 165.00075 * 11 10 7 13 13 C 1.50699 * 109.46751 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00138 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99853 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00010 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00081 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47139 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.47349 * 119.99780 * 17 15 13 20 20 H 1.48501 * 109.47454 * 240.00280 * 17 15 13 21 21 C 1.54511 * 110.51397 * 55.83319 * 5 4 2 22 22 C 1.54481 * 104.05890 * 118.64741 * 21 5 4 23 23 O 1.44425 * 104.80674 * 23.98079 * 22 21 5 24 24 C 1.44432 * 105.27295 * 319.48902 * 23 22 21 25 25 H 1.08996 * 109.47821 * 60.00011 * 1 2 3 26 26 H 1.09004 * 109.47151 * 299.99118 * 1 2 3 27 27 H 1.09009 * 109.46665 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47323 * 120.00110 * 2 1 3 29 29 H 1.08999 * 109.47122 * 174.02536 * 3 2 1 30 30 H 1.08996 * 109.47209 * 294.03215 * 3 2 1 31 31 H 1.09003 * 109.47010 * 54.03100 * 3 2 1 32 32 H 1.09000 * 109.47224 * 55.25262 * 6 5 4 33 33 H 1.08999 * 109.47071 * 175.24929 * 6 5 4 34 34 H 0.96996 * 120.00090 * 245.00281 * 10 7 6 35 35 H 1.08994 * 109.47101 * 285.00261 * 11 10 7 36 36 H 1.08999 * 109.46328 * 45.00094 * 11 10 7 37 37 H 1.08994 * 109.47372 * 300.00020 * 12 11 10 38 38 H 1.08997 * 109.47195 * 60.00141 * 12 11 10 39 39 H 0.97000 * 119.99704 * 179.97438 * 16 15 13 40 40 H 1.09000 * 110.50837 * 237.29054 * 21 5 4 41 41 H 1.09001 * 110.50939 * 0.02562 * 21 5 4 42 42 H 1.08999 * 110.37252 * 142.81229 * 22 21 5 43 43 H 1.09003 * 110.37188 * 265.03465 * 22 21 5 44 44 H 1.09002 * 110.36606 * 281.68185 * 24 23 22 45 45 H 1.08998 * 110.36828 * 159.34347 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 3.0597 -1.6046 -0.9111 6 6 4.3219 -0.8714 -0.4528 7 16 4.9352 0.1770 -1.8001 8 8 5.4275 -0.6207 -2.8681 9 8 4.0391 1.2530 -2.0422 10 7 6.2868 0.9028 -1.1767 11 6 7.4552 0.0933 -0.8217 12 6 8.6689 1.0053 -0.6324 13 6 9.8709 0.1726 -0.2679 14 1 9.7785 -0.8998 -0.1805 15 6 11.0889 0.7799 -0.0470 16 7 11.2019 2.0857 -0.1549 17 14 12.5787 -0.2522 0.4055 18 1 12.1902 -1.6844 0.4616 19 1 13.6385 -0.0672 -0.6181 20 1 13.0920 0.1743 1.7321 21 6 2.6211 -2.6410 0.1476 22 6 2.6979 -3.9928 -0.5962 23 8 3.6452 -3.7732 -1.6640 24 6 3.3497 -2.4528 -2.1692 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 0.5137 0.8901 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8934 -0.5138 0.8899 29 1 3.1246 1.4445 0.1070 30 1 1.7664 1.9246 -0.9385 31 1 1.5919 1.9863 0.8317 32 1 4.0879 -0.2512 0.4125 33 1 5.0868 -1.5992 -0.1818 34 1 6.3049 1.8638 -1.0464 35 1 7.2566 -0.4444 0.1053 36 1 7.6583 -0.6209 -1.6197 37 1 8.8675 1.5431 -1.5594 38 1 8.4658 1.7196 0.1655 39 1 12.0587 2.5129 0.0008 40 1 3.3049 -2.6327 0.9964 41 1 1.6006 -2.4434 0.4756 42 1 3.0558 -4.7747 0.0737 43 1 1.7217 -4.2590 -1.0014 44 1 2.4738 -2.4819 -2.8174 45 1 4.2083 -2.0517 -2.7077 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595319488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:37 Heat of formation + Delta-G solvation = -192.658744 kcal Electronic energy + Delta-G solvation = -27034.879982 eV Core-core repulsion = 23178.760758 eV Total energy + Delta-G solvation = -3856.119225 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.42896 -38.83079 -38.18647 -37.13011 -36.99599 -34.74233 -34.39863 -32.56226 -31.10958 -31.01119 -28.37673 -27.65650 -26.42117 -24.19292 -23.02718 -22.70122 -21.14889 -20.46006 -18.96708 -18.74348 -18.29258 -17.56584 -17.30760 -16.94172 -16.59673 -16.42625 -16.25451 -15.75054 -15.55336 -15.49255 -15.32839 -14.44811 -14.36945 -14.15185 -14.02345 -13.71804 -13.54738 -13.35131 -13.24940 -13.19107 -13.07989 -13.01545 -12.90560 -12.70950 -12.50003 -12.37891 -12.33080 -12.20381 -11.84618 -11.67305 -11.53400 -11.46761 -11.28113 -10.86035 -10.80353 -10.60839 -10.28400 -8.21147 -6.32057 -0.82330 1.42881 1.44493 1.56896 1.69416 2.28352 2.42841 2.66748 2.82529 3.07112 3.12523 3.13982 3.41801 3.59490 3.86719 4.04681 4.11495 4.13466 4.15887 4.19958 4.27951 4.32206 4.46080 4.52702 4.61839 4.73606 4.79153 4.80293 4.81652 4.83984 4.93112 4.94300 4.96699 4.99171 5.33363 5.43550 5.49117 5.60251 5.61620 5.80242 6.00186 6.13659 6.21552 6.84198 7.37593 8.91198 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017674 B = 0.003476 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.907632 B = 8053.884436 C = 8756.468348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 C -0.175 4.175 4 O -0.376 6.376 5 C 0.097 3.903 6 C -0.641 4.641 7 S 2.609 3.391 8 O -0.990 6.990 9 O -0.965 6.965 10 N -1.118 6.118 11 C 0.126 3.874 12 C 0.019 3.981 13 C -0.543 4.543 14 H 0.070 0.930 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.966 3.034 18 H -0.258 1.258 19 H -0.283 1.283 20 H -0.277 1.277 21 C -0.167 4.167 22 C 0.035 3.965 23 O -0.379 6.379 24 C 0.009 3.991 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.166 0.834 33 H 0.164 0.836 34 H 0.418 0.582 35 H 0.080 0.920 36 H 0.061 0.939 37 H -0.005 1.005 38 H 0.011 0.989 39 H 0.264 0.736 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.277 -8.882 5.482 25.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 C -0.233 4.233 4 O -0.296 6.296 5 C 0.055 3.945 6 C -0.773 4.773 7 S 2.705 3.295 8 O -0.980 6.980 9 O -0.955 6.955 10 N -0.878 5.878 11 C 0.001 3.999 12 C -0.020 4.020 13 C -0.582 4.582 14 H 0.088 0.912 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.790 3.210 18 H -0.182 1.182 19 H -0.209 1.209 20 H -0.203 1.203 21 C -0.205 4.205 22 C -0.041 4.041 23 O -0.298 6.298 24 C -0.068 4.068 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.184 0.816 33 H 0.182 0.818 34 H 0.252 0.748 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.013 0.987 38 H 0.029 0.971 39 H 0.073 0.927 40 H 0.124 0.876 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -23.405 -8.913 4.321 25.414 hybrid contribution 1.222 0.477 0.801 1.537 sum -22.183 -8.436 5.122 24.279 Atomic orbital electron populations 1.22000 0.92367 1.03290 1.03293 1.22532 0.96098 0.92610 0.88037 1.22393 1.01105 0.96626 1.03152 1.88078 1.51174 1.55926 1.34434 1.22525 0.85083 0.89798 0.97143 1.31166 1.09031 1.16585 1.20510 1.04777 0.72990 0.75066 0.76630 1.93483 1.79532 1.72215 1.52807 1.93573 1.64629 1.52364 1.84908 1.55489 1.29246 1.18977 1.84069 1.21388 0.84945 0.93774 0.99828 1.19162 0.92022 0.94976 0.95845 1.21614 0.94718 0.94561 1.47271 0.91191 1.25954 1.02386 0.96132 0.95237 1.70097 1.26036 1.10536 1.50476 0.85383 0.78519 0.79331 0.77726 1.18193 1.20892 1.20285 1.23653 1.05051 0.93470 0.98363 1.23718 0.93954 0.97686 0.88757 1.89216 1.56768 1.31609 1.52159 1.24160 1.04236 0.83486 0.94938 0.92665 0.89223 0.91186 0.89107 0.93486 0.92614 0.89490 0.81596 0.81767 0.74751 0.90148 0.92026 0.98670 0.97061 0.92731 0.87644 0.86905 0.86491 0.90433 0.89293 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.56 71.98 0.69 -1.22 16 2 C 0.06 1.05 2.01 30.60 0.06 1.12 16 3 C -0.18 -3.44 8.19 71.98 0.59 -2.85 16 4 O -0.38 -8.29 9.07 -148.78 -1.35 -9.64 16 5 C 0.10 2.01 0.70 -9.78 -0.01 2.00 16 6 C -0.64 -13.72 4.50 71.98 0.32 -13.39 16 7 S 2.61 80.94 4.87 -56.49 -0.28 80.66 16 8 O -0.99 -37.70 14.70 -127.65 -1.88 -39.58 16 9 O -0.96 -32.64 15.12 -125.98 -1.90 -34.54 16 10 N -1.12 -37.36 5.89 -187.49 -1.10 -38.47 16 11 C 0.13 4.88 6.07 86.38 0.52 5.40 16 12 C 0.02 0.93 5.11 29.85 0.15 1.08 16 13 C -0.54 -29.46 9.11 25.60 0.23 -29.23 16 14 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 15 C 0.00 0.06 5.46 84.66 0.46 0.53 16 16 N -0.93 -55.18 13.29 21.45 0.28 -54.90 16 17 Si 0.97 42.91 29.54 68.60 2.03 44.94 16 18 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 21 C -0.17 -2.25 5.43 31.61 0.17 -2.08 16 22 C 0.03 0.52 7.63 72.49 0.55 1.08 16 23 O -0.38 -9.23 11.65 -148.98 -1.74 -10.97 16 24 C 0.01 0.23 6.73 72.48 0.49 0.71 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.09 1.07 6.04 -2.39 -0.01 1.06 16 29 H 0.05 0.98 5.27 -2.39 -0.01 0.97 16 30 H 0.05 1.35 7.98 -2.39 -0.02 1.33 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.17 2.66 5.98 -2.39 -0.01 2.65 16 33 H 0.16 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.42 13.45 8.62 -96.75 -0.83 12.62 16 35 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.06 2.48 7.69 -2.39 -0.02 2.46 16 37 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.11 1.11 7.73 -2.39 -0.02 1.10 16 41 H 0.11 1.07 6.87 -2.39 -0.02 1.06 16 42 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.09 2.05 8.08 -2.39 -0.02 2.03 16 45 H 0.11 3.29 4.43 -2.39 -0.01 3.28 16 Total: -1.00 -73.38 362.11 -1.54 -74.92 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.16 Total: 24.42 kcal Atomic # 6 Polarization: -41.09 SS G_CDS: 4.24 Total: -36.85 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -0.82 Total: -93.36 kcal Atomic # 8 Polarization: -87.86 SS G_CDS: -6.87 Total: -94.73 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 80.94 SS G_CDS: -0.28 Total: 80.66 kcal Total: -73.38 -1.54 -74.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595319488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.740 kcal (2) G-P(sol) polarization free energy of solvation -73.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds