Wall clock time and date at job start Fri Apr 10 2020 14:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47242 * 2 1 4 4 C 1.52998 * 109.47092 * 120.00439 * 2 1 3 5 5 N 1.46499 * 109.47183 * 299.35956 * 4 2 1 6 6 S 1.65597 * 119.99943 * 164.99970 * 5 4 2 7 7 O 1.42101 * 104.27712 * 181.07270 * 6 5 4 8 8 O 1.42099 * 104.27861 * 308.92961 * 6 5 4 9 9 C 1.81398 * 104.45018 * 65.00241 * 6 5 4 10 10 C 1.52998 * 109.47231 * 179.97438 * 9 6 5 11 11 C 1.50696 * 109.46945 * 179.97438 * 10 9 6 12 12 H 1.08000 * 120.00324 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99842 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00052 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99988 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46928 * 0.02562 * 15 13 11 17 17 H 1.48491 * 109.47192 * 120.00474 * 15 13 11 18 18 H 1.48500 * 109.47055 * 240.00573 * 15 13 11 19 19 C 1.53001 * 109.47020 * 240.00261 * 2 1 3 20 20 C 1.52991 * 109.47159 * 172.86483 * 19 2 1 21 21 C 1.53005 * 109.63053 * 186.25701 * 20 19 2 22 22 O 1.43369 * 109.63344 * 306.64711 * 20 19 2 23 23 C 1.43906 * 107.44878 * 120.35523 * 22 20 19 24 24 C 1.54912 * 103.01413 * 21.54469 * 23 22 20 25 25 O 1.43747 * 109.63270 * 65.86319 * 20 19 2 26 26 H 1.08995 * 109.46836 * 305.00527 * 1 2 3 27 27 H 1.09005 * 109.46862 * 65.00581 * 1 2 3 28 28 H 1.09001 * 109.47066 * 185.00792 * 1 2 3 29 29 H 1.09003 * 109.47170 * 59.36182 * 4 2 1 30 30 H 1.08995 * 109.46962 * 179.35967 * 4 2 1 31 31 H 0.96999 * 119.99854 * 345.00439 * 5 4 2 32 32 H 1.08998 * 109.47131 * 300.00160 * 9 6 5 33 33 H 1.08998 * 109.47029 * 59.99712 * 9 6 5 34 34 H 1.09003 * 109.47187 * 299.99843 * 10 9 6 35 35 H 1.08998 * 109.47111 * 60.00055 * 10 9 6 36 36 H 0.97003 * 120.00515 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.47063 * 52.86344 * 19 2 1 38 38 H 1.09005 * 109.46979 * 292.87059 * 19 2 1 39 39 H 1.09000 * 109.47163 * 59.99973 * 21 20 19 40 40 H 1.09001 * 109.46890 * 299.99961 * 21 20 19 41 41 H 1.08998 * 109.47137 * 180.02562 * 21 20 19 42 42 H 1.08995 * 110.76407 * 263.14964 * 23 22 20 43 43 H 1.08993 * 110.82612 * 139.96754 * 23 22 20 44 44 H 1.09001 * 110.97929 * 206.27669 * 24 23 22 45 45 H 1.09003 * 110.97836 * 82.49590 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.5644 -0.0220 2.4453 6 16 1.6393 -0.7648 3.9235 7 8 1.0794 0.1839 4.8212 8 8 1.0221 -2.0273 3.7130 9 6 3.4141 -0.9685 4.2382 10 6 3.6169 -1.6516 5.5921 11 6 5.0913 -1.8214 5.8533 12 1 5.8117 -1.4762 5.1265 13 6 5.5206 -2.4166 7.0206 14 7 4.6434 -2.8365 7.9058 15 14 7.3483 -2.6264 7.3447 16 1 8.1201 -2.0744 6.2023 17 1 7.7172 -1.9015 8.5871 18 1 7.6606 -4.0696 7.5024 19 6 2.0401 -0.7212 -1.2493 20 6 3.5594 -0.5679 -1.3421 21 6 4.0550 -1.1517 -2.6668 22 8 3.9090 0.8205 -1.2669 23 6 4.7659 0.9883 -0.1231 24 6 5.3213 -0.4391 0.1093 25 8 4.1824 -1.2593 -0.2466 26 1 -0.3633 0.5895 0.8417 27 1 -0.3633 0.4342 -0.9315 28 1 -0.3633 -1.0238 0.0897 29 1 1.6674 -1.7457 1.2548 30 1 3.1299 -0.7313 1.2434 31 1 1.2055 0.8761 2.3715 32 1 3.8545 -1.5816 3.4519 33 1 3.8957 0.0092 4.2492 34 1 3.1766 -1.0381 6.3782 35 1 3.1352 -2.6294 5.5815 36 1 4.9453 -3.2555 8.7269 37 1 1.5762 -0.2863 -2.1347 38 1 1.7846 -1.7791 -1.1878 39 1 3.5864 -0.6210 -3.4956 40 1 3.7940 -2.2087 -2.7182 41 1 5.1375 -1.0415 -2.7300 42 1 4.1944 1.3248 0.7419 43 1 5.5746 1.6851 -0.3436 44 1 5.5965 -0.5855 1.1537 45 1 6.1676 -0.6402 -0.5476 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741252807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:16 Heat of formation + Delta-G solvation = -180.503490 kcal Electronic energy + Delta-G solvation = -26984.366299 eV Core-core repulsion = 23128.774166 eV Total energy + Delta-G solvation = -3855.592134 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.07462 -37.06208 -36.43923 -35.35779 -35.24642 -33.87659 -33.64541 -31.55795 -31.14285 -28.71700 -27.20492 -25.57828 -25.47109 -23.44908 -21.65438 -21.54545 -20.45351 -18.81419 -17.81155 -17.37536 -16.72275 -16.49789 -16.23673 -15.86156 -15.41033 -14.97154 -14.68146 -14.54988 -14.37866 -13.94849 -13.70112 -13.32820 -13.17014 -13.06054 -12.93965 -12.58689 -12.47241 -12.46244 -12.18053 -11.79324 -11.72481 -11.64101 -11.52995 -11.47900 -11.43310 -11.09550 -10.94333 -10.91595 -10.69832 -10.41374 -10.37273 -10.33084 -9.84865 -9.69482 -9.31287 -8.88648 -8.50293 -6.12043 -4.17424 0.87641 3.14076 3.24681 3.26888 3.31805 3.34606 3.68187 4.29288 4.33777 4.37984 4.39427 4.54843 4.65379 4.73509 4.80481 4.91774 5.04798 5.10492 5.17531 5.23298 5.33870 5.36649 5.43779 5.46712 5.53022 5.54916 5.64746 5.69687 5.70463 5.74485 5.81351 5.83942 5.96655 6.00933 6.20390 6.30957 6.51305 6.87866 7.20835 7.32120 7.38860 7.80746 8.18398 8.85923 9.47116 10.99109 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.004169 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.086775 B = 6714.095434 C = 8267.964401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.082 0.918 4 C 0.107 3.893 5 N -1.128 6.128 6 S 2.594 3.406 7 O -0.971 6.971 8 O -0.967 6.967 9 C -0.590 4.590 10 C 0.028 3.972 11 C -0.518 4.518 12 H 0.061 0.939 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.117 4.117 20 C 0.251 3.749 21 C -0.170 4.170 22 O -0.376 6.376 23 C 0.018 3.982 24 C 0.010 3.990 25 O -0.362 6.362 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.409 0.591 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.264 0.736 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 7.238 -21.833 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 H 0.100 0.900 4 C -0.019 4.019 5 N -0.886 5.886 6 S 2.691 3.309 7 O -0.962 6.962 8 O -0.957 6.957 9 C -0.724 4.724 10 C -0.011 4.011 11 C -0.558 4.558 12 H 0.079 0.921 13 C -0.145 4.145 14 N -0.528 5.528 15 Si 0.726 3.274 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.155 4.155 20 C 0.174 3.826 21 C -0.228 4.228 22 O -0.298 6.298 23 C -0.058 4.058 24 C -0.067 4.067 25 O -0.282 6.282 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.242 0.758 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.134 0.866 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.499 6.663 -21.200 22.363 hybrid contribution 1.701 0.351 0.042 1.737 sum -0.799 7.015 -21.158 22.305 Atomic orbital electron populations 1.21832 0.94562 1.02503 1.01570 1.21246 0.96302 1.00364 0.93439 0.89995 1.21808 1.00279 0.96139 0.83630 1.55793 1.80026 1.29162 1.23634 1.05461 0.79124 0.73954 0.72381 1.93545 1.77260 1.62311 1.63041 1.93534 1.74236 1.43619 1.84347 1.30442 1.21319 1.10079 1.10516 1.18959 0.99823 0.95761 0.86595 1.21024 0.90709 1.39921 1.04108 0.92066 1.25068 0.98128 0.95283 0.96012 1.69963 1.33694 1.39779 1.09377 0.86431 0.84751 0.77933 0.78250 1.19703 1.20829 1.20807 1.21990 0.92058 1.02501 0.98934 1.23443 0.93319 0.77884 0.87935 1.22357 1.02226 1.01941 0.96249 1.88805 1.68082 1.25325 1.47545 1.24187 0.94098 0.97868 0.89660 1.24446 0.89961 0.88668 1.03585 1.89314 1.41146 1.47191 1.50556 0.92256 0.92741 0.92247 0.90580 0.89708 0.75769 0.86317 0.86296 0.94893 0.94842 0.92596 0.89593 0.89570 0.90856 0.90469 0.91847 0.90160 0.88356 0.86621 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.96 37.16 0.33 -1.07 16 2 C -0.09 -0.93 2.32 -90.62 -0.21 -1.14 16 3 H 0.08 0.80 7.25 -51.93 -0.38 0.42 16 4 C 0.11 1.31 5.06 -4.04 -0.02 1.29 16 5 N -1.13 -15.05 5.42 -10.62 -0.06 -15.11 16 6 S 2.59 47.38 5.46 -107.50 -0.59 46.79 16 7 O -0.97 -20.51 18.08 -57.54 -1.04 -21.55 16 8 O -0.97 -20.69 17.50 -57.54 -1.01 -21.70 16 9 C -0.59 -11.27 6.01 37.16 0.22 -11.04 16 10 C 0.03 0.71 4.98 -27.89 -0.14 0.57 16 11 C -0.52 -14.19 9.11 -34.44 -0.31 -14.51 16 12 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 15 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C -0.12 -1.03 4.31 -26.74 -0.12 -1.15 16 20 C 0.25 2.37 1.05 -26.73 -0.03 2.34 16 21 C -0.17 -1.33 9.20 37.16 0.34 -0.99 16 22 O -0.38 -3.70 9.79 -59.05 -0.58 -4.28 16 23 C 0.02 0.15 7.69 38.17 0.29 0.45 16 24 C 0.01 0.09 7.39 38.17 0.28 0.37 16 25 O -0.36 -3.90 8.10 -59.05 -0.48 -4.38 16 26 H 0.06 0.58 7.39 -51.93 -0.38 0.20 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.03 7.69 -51.93 -0.40 0.63 16 30 H 0.09 1.01 4.38 -51.93 -0.23 0.78 16 31 H 0.41 4.62 8.06 -34.47 -0.28 4.34 16 32 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 33 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 34 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 372.89 15.07 5.62 5.62 Total: -1.00 -35.39 372.89 -9.41 -44.80 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.54 Total: 2.89 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 0.55 Total: -23.35 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.68 Total: -40.83 kcal Atomic # 8 Polarization: -48.81 SS G_CDS: -3.10 Total: -51.91 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 47.38 SS G_CDS: -0.59 Total: 46.79 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.39 -9.41 -44.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741252807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.707 kcal (2) G-P(sol) polarization free energy of solvation -35.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds