Wall clock time and date at job start Fri Apr 10 2020 14:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47242 * 2 1 4 4 C 1.52998 * 109.47092 * 120.00439 * 2 1 3 5 5 N 1.46499 * 109.47183 * 299.35956 * 4 2 1 6 6 S 1.65597 * 119.99943 * 164.99970 * 5 4 2 7 7 O 1.42101 * 104.27712 * 181.07270 * 6 5 4 8 8 O 1.42099 * 104.27861 * 308.92961 * 6 5 4 9 9 C 1.81398 * 104.45018 * 65.00241 * 6 5 4 10 10 C 1.52998 * 109.47231 * 179.97438 * 9 6 5 11 11 C 1.50696 * 109.46945 * 179.97438 * 10 9 6 12 12 H 1.08000 * 120.00324 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99842 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00052 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99988 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46928 * 0.02562 * 15 13 11 17 17 H 1.48491 * 109.47192 * 120.00474 * 15 13 11 18 18 H 1.48500 * 109.47055 * 240.00573 * 15 13 11 19 19 C 1.53001 * 109.47020 * 240.00261 * 2 1 3 20 20 C 1.52991 * 109.47159 * 172.86483 * 19 2 1 21 21 C 1.53005 * 109.63053 * 186.25701 * 20 19 2 22 22 O 1.43369 * 109.63344 * 306.64711 * 20 19 2 23 23 C 1.43906 * 107.44878 * 120.35523 * 22 20 19 24 24 C 1.54912 * 103.01413 * 21.54469 * 23 22 20 25 25 O 1.43747 * 109.63270 * 65.86319 * 20 19 2 26 26 H 1.08995 * 109.46836 * 305.00527 * 1 2 3 27 27 H 1.09005 * 109.46862 * 65.00581 * 1 2 3 28 28 H 1.09001 * 109.47066 * 185.00792 * 1 2 3 29 29 H 1.09003 * 109.47170 * 59.36182 * 4 2 1 30 30 H 1.08995 * 109.46962 * 179.35967 * 4 2 1 31 31 H 0.96999 * 119.99854 * 345.00439 * 5 4 2 32 32 H 1.08998 * 109.47131 * 300.00160 * 9 6 5 33 33 H 1.08998 * 109.47029 * 59.99712 * 9 6 5 34 34 H 1.09003 * 109.47187 * 299.99843 * 10 9 6 35 35 H 1.08998 * 109.47111 * 60.00055 * 10 9 6 36 36 H 0.97003 * 120.00515 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.47063 * 52.86344 * 19 2 1 38 38 H 1.09005 * 109.46979 * 292.87059 * 19 2 1 39 39 H 1.09000 * 109.47163 * 59.99973 * 21 20 19 40 40 H 1.09001 * 109.46890 * 299.99961 * 21 20 19 41 41 H 1.08998 * 109.47137 * 180.02562 * 21 20 19 42 42 H 1.08995 * 110.76407 * 263.14964 * 23 22 20 43 43 H 1.08993 * 110.82612 * 139.96754 * 23 22 20 44 44 H 1.09001 * 110.97929 * 206.27669 * 24 23 22 45 45 H 1.09003 * 110.97836 * 82.49590 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.5644 -0.0220 2.4453 6 16 1.6393 -0.7648 3.9235 7 8 1.0794 0.1839 4.8212 8 8 1.0221 -2.0273 3.7130 9 6 3.4141 -0.9685 4.2382 10 6 3.6169 -1.6516 5.5921 11 6 5.0913 -1.8214 5.8533 12 1 5.8117 -1.4762 5.1265 13 6 5.5206 -2.4166 7.0206 14 7 4.6434 -2.8365 7.9058 15 14 7.3483 -2.6264 7.3447 16 1 8.1201 -2.0744 6.2023 17 1 7.7172 -1.9015 8.5871 18 1 7.6606 -4.0696 7.5024 19 6 2.0401 -0.7212 -1.2493 20 6 3.5594 -0.5679 -1.3421 21 6 4.0550 -1.1517 -2.6668 22 8 3.9090 0.8205 -1.2669 23 6 4.7659 0.9883 -0.1231 24 6 5.3213 -0.4391 0.1093 25 8 4.1824 -1.2593 -0.2466 26 1 -0.3633 0.5895 0.8417 27 1 -0.3633 0.4342 -0.9315 28 1 -0.3633 -1.0238 0.0897 29 1 1.6674 -1.7457 1.2548 30 1 3.1299 -0.7313 1.2434 31 1 1.2055 0.8761 2.3715 32 1 3.8545 -1.5816 3.4519 33 1 3.8957 0.0092 4.2492 34 1 3.1766 -1.0381 6.3782 35 1 3.1352 -2.6294 5.5815 36 1 4.9453 -3.2555 8.7269 37 1 1.5762 -0.2863 -2.1347 38 1 1.7846 -1.7791 -1.1878 39 1 3.5864 -0.6210 -3.4956 40 1 3.7940 -2.2087 -2.7182 41 1 5.1375 -1.0415 -2.7300 42 1 4.1944 1.3248 0.7419 43 1 5.5746 1.6851 -0.3436 44 1 5.5965 -0.5855 1.1537 45 1 6.1676 -0.6402 -0.5476 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741252807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:14 Heat of formation + Delta-G solvation = -206.884441 kcal Electronic energy + Delta-G solvation = -26985.510263 eV Core-core repulsion = 23128.774166 eV Total energy + Delta-G solvation = -3856.736097 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.76367 -38.23130 -37.81417 -36.98659 -35.95624 -35.87931 -34.53301 -33.11243 -32.34780 -29.35633 -27.93131 -27.56181 -26.42520 -24.09044 -23.58436 -22.25104 -21.31079 -20.24820 -19.05630 -18.50113 -18.22529 -17.52819 -17.30621 -17.04278 -16.65943 -16.50905 -16.15633 -15.52411 -15.43058 -15.01476 -14.64513 -14.49220 -14.34658 -13.96477 -13.89317 -13.72724 -13.67319 -13.32575 -13.18254 -13.08949 -13.07185 -13.01320 -12.94535 -12.79649 -12.74730 -12.38317 -12.24683 -12.16058 -12.09349 -11.76477 -11.73290 -11.54385 -11.20984 -10.97291 -10.64407 -10.51136 -10.08191 -8.24490 -6.38303 -0.64719 1.41931 1.42628 1.55580 1.89222 2.39038 2.51716 2.82547 3.02222 3.09350 3.29097 3.66536 3.73137 3.81754 3.89620 4.01927 4.10498 4.14874 4.23830 4.35042 4.35517 4.53776 4.61461 4.69102 4.74741 4.75884 4.76280 4.81507 4.86102 4.92702 5.00197 5.06206 5.12637 5.17654 5.24921 5.28725 5.29139 5.39144 5.47656 5.69937 6.07399 6.17950 6.21460 6.75553 7.31833 8.88211 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.004169 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.086775 B = 6714.095434 C = 8267.964401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 H 0.088 0.912 4 C 0.100 3.900 5 N -1.106 6.106 6 S 2.617 3.383 7 O -1.001 7.001 8 O -1.001 7.001 9 C -0.585 4.585 10 C 0.020 3.980 11 C -0.534 4.534 12 H 0.079 0.921 13 C -0.005 4.005 14 N -0.936 5.936 15 Si 0.974 3.026 16 H -0.253 1.253 17 H -0.279 1.279 18 H -0.280 1.280 19 C -0.117 4.117 20 C 0.245 3.755 21 C -0.168 4.168 22 O -0.385 6.385 23 C 0.015 3.985 24 C 0.003 3.997 25 O -0.382 6.382 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.423 0.577 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.006 0.994 35 H 0.004 0.996 36 H 0.266 0.734 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 8.361 -23.988 25.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 H 0.106 0.894 4 C -0.025 4.025 5 N -0.869 5.869 6 S 2.714 3.286 7 O -0.991 6.991 8 O -0.991 6.991 9 C -0.718 4.718 10 C -0.019 4.019 11 C -0.573 4.573 12 H 0.097 0.903 13 C -0.203 4.203 14 N -0.576 5.576 15 Si 0.797 3.203 16 H -0.176 1.176 17 H -0.205 1.205 18 H -0.206 1.206 19 C -0.155 4.155 20 C 0.169 3.831 21 C -0.226 4.226 22 O -0.307 6.307 23 C -0.061 4.061 24 C -0.073 4.073 25 O -0.304 6.304 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.259 0.741 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.024 0.976 35 H 0.022 0.978 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.991 7.804 -23.367 24.655 hybrid contribution 1.188 0.021 0.652 1.355 sum 0.197 7.825 -22.714 24.025 Atomic orbital electron populations 1.21861 0.94274 1.02062 1.02473 1.21208 0.96485 1.00416 0.92557 0.89352 1.22038 1.00874 0.95677 0.83902 1.55277 1.79764 1.29673 1.22148 1.04481 0.78281 0.73021 0.72866 1.93497 1.77765 1.62898 1.64974 1.93491 1.74850 1.45595 1.85122 1.30309 1.22818 1.11228 1.07403 1.18826 0.99050 0.94522 0.89494 1.21538 0.91814 1.39450 1.04524 0.90316 1.26124 1.03431 0.94891 0.95841 1.70114 1.36348 1.40998 1.10101 0.85267 0.78483 0.77881 0.78629 1.17607 1.20507 1.20578 1.22034 0.92035 1.02483 0.98938 1.23606 0.93464 0.77834 0.88245 1.22346 1.02291 1.02162 0.95757 1.88789 1.68413 1.25468 1.48031 1.24309 0.94469 0.97939 0.89361 1.24590 0.89961 0.88806 1.03905 1.89285 1.41901 1.47970 1.51202 0.92716 0.90783 0.93139 0.92017 0.88877 0.74106 0.84212 0.83609 0.97595 0.97752 0.92470 0.87821 0.89667 0.89808 0.90204 0.91856 0.90259 0.86470 0.86664 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.96 71.98 0.64 -1.92 16 2 C -0.09 -1.54 2.32 -10.79 -0.03 -1.56 16 3 H 0.09 1.49 7.25 -2.39 -0.02 1.47 16 4 C 0.10 2.32 5.06 86.38 0.44 2.76 16 5 N -1.11 -28.15 5.42 -187.50 -1.02 -29.17 16 6 S 2.62 95.68 5.46 -56.49 -0.31 95.37 16 7 O -1.00 -42.60 18.08 -127.65 -2.31 -44.91 16 8 O -1.00 -43.56 17.50 -127.65 -2.23 -45.79 16 9 C -0.59 -22.01 6.01 71.98 0.43 -21.57 16 10 C 0.02 1.04 4.98 29.85 0.15 1.19 16 11 C -0.53 -29.23 9.11 25.60 0.23 -29.00 16 12 H 0.08 3.92 7.74 -2.91 -0.02 3.89 16 13 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 14 N -0.94 -57.01 13.29 21.45 0.28 -56.73 16 15 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 16 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 19 C -0.12 -1.82 4.31 30.59 0.13 -1.69 16 20 C 0.24 4.11 1.05 30.59 0.03 4.14 16 21 C -0.17 -2.27 9.20 71.98 0.66 -1.61 16 22 O -0.39 -6.64 9.79 -126.20 -1.24 -7.87 16 23 C 0.02 0.22 7.69 72.64 0.56 0.78 16 24 C 0.00 0.05 7.39 72.64 0.54 0.59 16 25 O -0.38 -7.61 8.10 -126.20 -1.02 -8.63 16 26 H 0.05 0.98 7.39 -2.39 -0.02 0.96 16 27 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 29 H 0.06 1.64 7.69 -2.39 -0.02 1.62 16 30 H 0.09 2.05 4.38 -2.39 -0.01 2.04 16 31 H 0.42 8.81 8.06 -96.75 -0.78 8.03 16 32 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 33 H 0.15 4.65 8.14 -2.39 -0.02 4.63 16 34 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 1.13 8.07 -2.39 -0.02 1.11 16 43 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -76.95 372.89 -1.37 -78.32 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.19 Total: 22.28 kcal Atomic # 6 Polarization: -51.95 SS G_CDS: 4.25 Total: -47.69 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -0.73 Total: -85.89 kcal Atomic # 8 Polarization: -100.41 SS G_CDS: -6.80 Total: -107.21 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 95.68 SS G_CDS: -0.31 Total: 95.37 kcal Total: -76.95 -1.37 -78.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741252807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.569 kcal (2) G-P(sol) polarization free energy of solvation -76.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds