Wall clock time and date at job start Fri Apr 10 2020 14:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47189 * 2 1 4 4 C 1.42899 * 113.99854 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47252 * 180.02562 * 4 3 2 6 6 O 1.42904 * 109.47196 * 65.00357 * 5 4 3 7 7 C 1.42901 * 114.00260 * 180.02562 * 6 5 4 8 8 H 1.08996 * 110.63726 * 333.14018 * 7 6 5 9 9 C 1.55149 * 110.87216 * 96.38886 * 7 6 5 10 10 C 1.55130 * 101.48840 * 82.76578 * 9 7 6 11 11 N 1.47429 * 104.71826 * 37.29305 * 10 9 7 12 12 S 1.65606 * 125.64434 * 155.81920 * 11 10 9 13 13 O 1.42100 * 104.27450 * 153.62339 * 12 11 10 14 14 O 1.42093 * 104.28025 * 25.76255 * 12 11 10 15 15 C 1.81403 * 104.44724 * 269.68997 * 12 11 10 16 16 C 1.53001 * 109.47153 * 180.02562 * 15 12 11 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.47013 * 108.70383 * 335.55514 * 11 10 9 26 26 H 1.09003 * 109.46761 * 299.99760 * 1 2 3 27 27 H 1.09003 * 109.47167 * 59.99136 * 1 2 3 28 28 H 1.08997 * 109.47565 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46901 * 240.00769 * 2 1 3 30 30 H 1.08996 * 109.47469 * 120.00633 * 2 1 3 31 31 H 1.09000 * 109.46716 * 60.00686 * 4 3 2 32 32 H 1.09004 * 109.47606 * 300.00653 * 4 3 2 33 33 H 1.09003 * 109.47414 * 305.00581 * 5 4 3 34 34 H 1.08996 * 109.47797 * 185.00400 * 5 4 3 35 35 H 1.08999 * 111.00691 * 201.00401 * 9 7 6 36 36 H 1.08996 * 111.00637 * 324.85993 * 9 7 6 37 37 H 1.09001 * 110.50109 * 278.45337 * 10 9 7 38 38 H 1.09001 * 110.34729 * 156.05633 * 10 9 7 39 39 H 1.09002 * 109.46959 * 60.00458 * 15 12 11 40 40 H 1.08998 * 109.47334 * 299.99936 * 15 12 11 41 41 H 1.09007 * 109.46922 * 59.99828 * 16 15 12 42 42 H 1.09003 * 109.46836 * 300.00583 * 16 15 12 43 43 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.88356 * 120.70404 * 25 11 10 45 45 H 1.09007 * 109.88208 * 241.86611 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8255 2.9383 0.0012 6 8 3.3978 3.5450 1.2223 7 6 3.7186 4.9338 1.3249 8 1 4.5974 5.1704 0.7252 9 6 2.5121 5.8125 0.9013 10 6 1.6752 5.8385 2.2073 11 7 2.6734 5.9000 3.2906 12 16 2.4106 6.4989 4.8121 13 8 3.3520 5.8129 5.6260 14 8 1.0133 6.3396 5.0150 15 6 2.8394 8.2570 4.6867 16 6 2.6364 8.9297 6.0458 17 6 2.9920 10.3904 5.9415 18 1 3.3286 10.7984 4.9999 19 6 2.8875 11.2061 7.0483 20 7 2.4770 10.7094 8.1948 21 14 3.3289 13.0165 6.9191 22 1 3.1318 13.6694 8.2383 23 1 4.7491 13.1516 6.5068 24 1 2.4562 13.6680 5.9096 25 6 3.9386 5.3358 2.7985 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8339 0.9765 -0.8892 32 1 3.8334 0.9766 0.8908 33 1 3.3499 3.4417 -0.8406 34 1 4.9083 3.0254 -0.0880 35 1 2.8376 6.8145 0.6219 36 1 1.9534 5.3447 0.0908 37 1 1.0759 4.9323 2.2948 38 1 1.0358 6.7209 2.2302 39 1 2.1993 8.7351 3.9451 40 1 3.8820 8.3562 4.3848 41 1 3.2767 8.4515 6.7871 42 1 1.5938 8.8305 6.3482 43 1 2.4039 11.2832 8.9735 44 1 4.7286 6.0839 2.8646 45 1 4.2065 4.4578 3.3863 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152477887.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:56 Heat of formation + Delta-G solvation = -169.936905 kcal Electronic energy + Delta-G solvation = -25447.627447 eV Core-core repulsion = 21592.493515 eV Total energy + Delta-G solvation = -3855.133932 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.41735 -38.26334 -36.53941 -36.36269 -35.36357 -33.86471 -32.13399 -31.13166 -30.39668 -29.47335 -28.32907 -25.57505 -23.09686 -23.06005 -22.55103 -21.39075 -21.23941 -18.56287 -17.56995 -17.52893 -17.19479 -16.52170 -16.22643 -15.64244 -15.47695 -15.21938 -15.11126 -14.57045 -14.50980 -13.92234 -13.74459 -13.52812 -13.35217 -12.90646 -12.82524 -12.62049 -12.48025 -12.02375 -11.92397 -11.73012 -11.66694 -11.55147 -11.50237 -11.46745 -11.23528 -11.18213 -11.05310 -10.94902 -10.88054 -10.41234 -10.35137 -9.92399 -9.77713 -9.73415 -9.30568 -8.67553 -8.48624 -6.10731 -4.16380 0.78608 3.11248 3.27986 3.31223 3.32684 3.34565 3.36186 4.28339 4.33970 4.39303 4.45051 4.65334 4.71996 4.74772 4.83102 4.87326 4.93644 5.01866 5.03698 5.09247 5.21976 5.24117 5.32833 5.43116 5.46250 5.50700 5.58887 5.62137 5.65225 5.71251 5.74408 5.83631 5.84328 6.07452 6.22279 6.51808 6.54654 6.86766 7.03568 7.32200 7.38553 7.81895 8.19377 8.86692 9.48002 11.00265 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028114 B = 0.002442 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.707721 B =11463.655954 C =11819.699913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.064 3.936 5 C 0.062 3.938 6 O -0.363 6.363 7 C 0.078 3.922 8 H 0.080 0.920 9 C -0.152 4.152 10 C 0.129 3.871 11 N -1.018 6.018 12 S 2.607 3.393 13 O -0.962 6.962 14 O -0.961 6.961 15 C -0.589 4.589 16 C 0.028 3.972 17 C -0.520 4.520 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.901 3.099 22 H -0.285 1.285 23 H -0.276 1.276 24 H -0.275 1.275 25 C 0.124 3.876 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.266 0.734 44 H 0.078 0.922 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 -17.991 -21.364 28.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.013 4.013 5 C -0.014 4.014 6 O -0.282 6.282 7 C 0.019 3.981 8 H 0.098 0.902 9 C -0.191 4.191 10 C 0.003 3.997 11 N -0.855 5.855 12 S 2.706 3.294 13 O -0.953 6.953 14 O -0.951 6.951 15 C -0.722 4.722 16 C -0.011 4.011 17 C -0.560 4.560 18 H 0.079 0.921 19 C -0.146 4.146 20 N -0.528 5.528 21 Si 0.728 3.272 22 H -0.211 1.211 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.002 4.002 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.964 -18.421 -20.206 27.413 hybrid contribution 0.788 1.411 -0.623 1.732 sum 2.753 -17.010 -20.829 27.033 Atomic orbital electron populations 1.21739 0.93639 1.02167 1.03378 1.22457 0.95821 0.83844 0.99831 1.87981 1.20400 1.26203 1.95361 1.22505 0.82352 0.95638 1.00770 1.22571 0.98152 0.92583 0.88144 1.88065 1.80744 1.22072 1.37313 1.23107 0.97007 0.81798 0.96208 0.90174 1.23322 0.97407 1.00418 0.97987 1.21900 0.90706 1.02223 0.84838 1.58887 1.18843 1.77043 1.30733 1.05290 0.74328 0.78337 0.71424 1.93531 1.64463 1.72087 1.65191 1.93538 1.31755 1.86465 1.83360 1.30500 1.10664 1.20565 1.10510 1.18965 0.98697 0.96914 0.86551 1.20962 1.45908 0.92670 0.96422 0.92116 1.25081 0.95027 0.99175 0.95274 1.69949 1.45992 1.36241 1.00650 0.86517 0.78980 0.84332 0.77347 1.21080 1.20101 1.20095 1.21730 0.86036 0.98873 0.93520 0.91532 0.91924 0.91195 0.93694 0.93365 0.92020 0.92362 0.92399 0.91706 0.89655 0.89645 0.90996 0.90702 0.86297 0.86332 0.94840 0.94842 0.92471 0.90399 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.44 6.66 37.16 0.25 0.69 16 3 O -0.38 -3.94 10.31 -40.08 -0.41 -4.35 16 4 C 0.06 0.50 6.32 37.16 0.23 0.74 16 5 C 0.06 0.49 6.16 37.16 0.23 0.72 16 6 O -0.36 -4.10 10.04 -40.08 -0.40 -4.50 16 7 C 0.08 0.77 3.44 -24.90 -0.09 0.69 16 8 H 0.08 0.57 7.82 -51.93 -0.41 0.16 16 9 C -0.15 -1.46 6.83 -24.47 -0.17 -1.63 16 10 C 0.13 1.66 6.89 -2.41 -0.02 1.64 16 11 N -1.02 -15.24 3.62 -111.29 -0.40 -15.65 16 12 S 2.61 49.99 5.65 -107.50 -0.61 49.38 16 13 O -0.96 -21.03 17.60 -57.54 -1.01 -22.05 16 14 O -0.96 -21.16 17.60 -57.54 -1.01 -22.18 16 15 C -0.59 -11.59 6.12 37.16 0.23 -11.36 16 16 C 0.03 0.72 4.98 -27.89 -0.14 0.59 16 17 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 21 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 C 0.12 1.55 6.66 -3.07 -0.02 1.53 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.36 8.11 -51.93 -0.42 -0.06 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.12 2.11 8.14 -51.92 -0.42 1.68 16 40 H 0.12 2.08 8.14 -51.93 -0.42 1.66 16 41 H 0.03 0.92 8.14 -51.92 -0.42 0.49 16 42 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 1.10 8.07 -51.92 -0.42 0.68 16 LS Contribution 386.33 15.07 5.82 5.82 Total: -1.00 -36.76 386.33 -9.81 -46.57 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -7.97 Total: -2.95 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 0.48 Total: -20.42 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.33 Total: -41.66 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -2.84 Total: -53.07 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 49.99 SS G_CDS: -0.61 Total: 49.38 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.76 -9.81 -46.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152477887.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.366 kcal (2) G-P(sol) polarization free energy of solvation -36.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds