Wall clock time and date at job start Fri Apr 10 2020 14:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47189 * 2 1 4 4 C 1.42899 * 113.99854 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47252 * 180.02562 * 4 3 2 6 6 O 1.42904 * 109.47196 * 65.00357 * 5 4 3 7 7 C 1.42901 * 114.00260 * 180.02562 * 6 5 4 8 8 H 1.08996 * 110.63726 * 333.14018 * 7 6 5 9 9 C 1.55149 * 110.87216 * 96.38886 * 7 6 5 10 10 C 1.55130 * 101.48840 * 82.76578 * 9 7 6 11 11 N 1.47429 * 104.71826 * 37.29305 * 10 9 7 12 12 S 1.65606 * 125.64434 * 155.81920 * 11 10 9 13 13 O 1.42100 * 104.27450 * 153.62339 * 12 11 10 14 14 O 1.42093 * 104.28025 * 25.76255 * 12 11 10 15 15 C 1.81403 * 104.44724 * 269.68997 * 12 11 10 16 16 C 1.53001 * 109.47153 * 180.02562 * 15 12 11 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.47013 * 108.70383 * 335.55514 * 11 10 9 26 26 H 1.09003 * 109.46761 * 299.99760 * 1 2 3 27 27 H 1.09003 * 109.47167 * 59.99136 * 1 2 3 28 28 H 1.08997 * 109.47565 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46901 * 240.00769 * 2 1 3 30 30 H 1.08996 * 109.47469 * 120.00633 * 2 1 3 31 31 H 1.09000 * 109.46716 * 60.00686 * 4 3 2 32 32 H 1.09004 * 109.47606 * 300.00653 * 4 3 2 33 33 H 1.09003 * 109.47414 * 305.00581 * 5 4 3 34 34 H 1.08996 * 109.47797 * 185.00400 * 5 4 3 35 35 H 1.08999 * 111.00691 * 201.00401 * 9 7 6 36 36 H 1.08996 * 111.00637 * 324.85993 * 9 7 6 37 37 H 1.09001 * 110.50109 * 278.45337 * 10 9 7 38 38 H 1.09001 * 110.34729 * 156.05633 * 10 9 7 39 39 H 1.09002 * 109.46959 * 60.00458 * 15 12 11 40 40 H 1.08998 * 109.47334 * 299.99936 * 15 12 11 41 41 H 1.09007 * 109.46922 * 59.99828 * 16 15 12 42 42 H 1.09003 * 109.46836 * 300.00583 * 16 15 12 43 43 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.88356 * 120.70404 * 25 11 10 45 45 H 1.09007 * 109.88208 * 241.86611 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8255 2.9383 0.0012 6 8 3.3978 3.5450 1.2223 7 6 3.7186 4.9338 1.3249 8 1 4.5974 5.1704 0.7252 9 6 2.5121 5.8125 0.9013 10 6 1.6752 5.8385 2.2073 11 7 2.6734 5.9000 3.2906 12 16 2.4106 6.4989 4.8121 13 8 3.3520 5.8129 5.6260 14 8 1.0133 6.3396 5.0150 15 6 2.8394 8.2570 4.6867 16 6 2.6364 8.9297 6.0458 17 6 2.9920 10.3904 5.9415 18 1 3.3286 10.7984 4.9999 19 6 2.8875 11.2061 7.0483 20 7 2.4770 10.7094 8.1948 21 14 3.3289 13.0165 6.9191 22 1 3.1318 13.6694 8.2383 23 1 4.7491 13.1516 6.5068 24 1 2.4562 13.6680 5.9096 25 6 3.9386 5.3358 2.7985 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8339 0.9765 -0.8892 32 1 3.8334 0.9766 0.8908 33 1 3.3499 3.4417 -0.8406 34 1 4.9083 3.0254 -0.0880 35 1 2.8376 6.8145 0.6219 36 1 1.9534 5.3447 0.0908 37 1 1.0759 4.9323 2.2948 38 1 1.0358 6.7209 2.2302 39 1 2.1993 8.7351 3.9451 40 1 3.8820 8.3562 4.3848 41 1 3.2767 8.4515 6.7871 42 1 1.5938 8.8305 6.3482 43 1 2.4039 11.2832 8.9735 44 1 4.7286 6.0839 2.8646 45 1 4.2065 4.4578 3.3863 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152477887.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:55 Heat of formation + Delta-G solvation = -197.808796 kcal Electronic energy + Delta-G solvation = -25448.836063 eV Core-core repulsion = 21592.493515 eV Total energy + Delta-G solvation = -3856.342548 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.21626 -38.94912 -38.21211 -37.23070 -37.02721 -35.90144 -33.13486 -32.74137 -31.28450 -30.23443 -29.15526 -27.59764 -24.06009 -23.66693 -23.51636 -23.05245 -22.03565 -19.96567 -19.14459 -18.39787 -18.25734 -17.80712 -17.18524 -17.07231 -16.69572 -16.54632 -16.15430 -15.86398 -15.43005 -15.24917 -14.79352 -14.70717 -14.43043 -14.17721 -13.77744 -13.74683 -13.63958 -13.29649 -13.25174 -13.18028 -12.90580 -12.85951 -12.79825 -12.59631 -12.44088 -12.24821 -12.23782 -12.16568 -12.06732 -11.91095 -11.75766 -11.62051 -11.18747 -10.64167 -10.54144 -10.45351 -9.92323 -8.25870 -6.40480 -0.76886 1.41069 1.45043 1.53169 1.74030 2.38385 2.67489 2.79128 2.86533 3.06023 3.07740 3.53377 3.71565 4.00904 4.05474 4.10838 4.16151 4.19158 4.28577 4.35081 4.39320 4.44578 4.49868 4.56426 4.58589 4.66659 4.69810 4.74238 4.83841 4.89311 4.91594 5.03110 5.04682 5.11552 5.19509 5.24677 5.26511 5.26664 5.45739 5.67674 6.05131 6.27421 6.41574 6.72972 7.29612 8.86289 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028114 B = 0.002442 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.707721 B =11463.655954 C =11819.699913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.410 6.410 4 C 0.057 3.943 5 C 0.057 3.943 6 O -0.395 6.395 7 C 0.082 3.918 8 H 0.120 0.880 9 C -0.140 4.140 10 C 0.115 3.885 11 N -1.014 6.014 12 S 2.627 3.373 13 O -0.995 6.995 14 O -0.997 6.997 15 C -0.580 4.580 16 C 0.020 3.980 17 C -0.538 4.538 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.935 5.935 21 Si 0.977 3.023 22 H -0.285 1.285 23 H -0.262 1.262 24 H -0.262 1.262 25 C 0.109 3.891 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.006 0.994 42 H 0.005 0.995 43 H 0.267 0.733 44 H 0.103 0.897 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 -17.160 -24.654 30.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.330 6.330 4 C -0.019 4.019 5 C -0.019 4.019 6 O -0.315 6.315 7 C 0.023 3.977 8 H 0.137 0.863 9 C -0.179 4.179 10 C -0.010 4.010 11 N -0.853 5.853 12 S 2.727 3.273 13 O -0.986 6.986 14 O -0.987 6.987 15 C -0.713 4.713 16 C -0.019 4.019 17 C -0.577 4.577 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.575 5.575 21 Si 0.800 3.200 22 H -0.211 1.211 23 H -0.186 1.186 24 H -0.187 1.187 25 C -0.016 4.016 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.161 0.839 40 H 0.163 0.837 41 H 0.024 0.976 42 H 0.023 0.977 43 H 0.076 0.924 44 H 0.121 0.879 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.488 -17.601 -23.508 29.574 hybrid contribution 0.306 1.024 0.358 1.127 sum 3.793 -16.577 -23.150 28.725 Atomic orbital electron populations 1.21765 0.93575 1.03172 1.02374 1.22605 0.95999 0.83186 1.00714 1.87941 1.21926 1.27603 1.95564 1.22709 0.81333 0.96178 1.01662 1.22811 0.99806 0.92213 0.87058 1.88037 1.81383 1.22873 1.39178 1.23184 0.98571 0.81422 0.94489 0.86267 1.23332 0.96637 1.01876 0.96017 1.22164 0.91000 1.01801 0.85996 1.58460 1.20717 1.76343 1.29791 1.04308 0.72950 0.77986 0.72063 1.93479 1.65075 1.72758 1.67252 1.93483 1.33761 1.86862 1.84595 1.30337 1.13008 1.20545 1.07366 1.18837 0.96314 0.97271 0.89519 1.21478 1.45490 0.93574 0.97193 0.90370 1.26177 0.94790 1.04711 0.94813 1.70109 1.47439 1.38283 1.01649 0.85318 0.79411 0.77713 0.77525 1.21081 1.18604 1.18699 1.22103 0.85271 0.98921 0.95264 0.93387 0.91994 0.89236 0.91698 0.93497 0.89312 0.93183 0.91575 0.89036 0.87252 0.88495 0.92722 0.90006 0.83886 0.83673 0.97583 0.97711 0.92388 0.87930 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 10.28 71.98 0.74 -1.36 16 2 C 0.05 0.75 6.66 71.98 0.48 1.23 16 3 O -0.41 -8.18 10.31 -144.35 -1.49 -9.66 16 4 C 0.06 0.81 6.32 71.98 0.45 1.26 16 5 C 0.06 0.75 6.16 71.98 0.44 1.19 16 6 O -0.39 -8.21 10.04 -144.35 -1.45 -9.66 16 7 C 0.08 1.38 3.44 31.78 0.11 1.49 16 8 H 0.12 1.10 7.82 -2.39 -0.02 1.08 16 9 C -0.14 -2.23 6.83 32.06 0.22 -2.01 16 10 C 0.11 2.83 6.89 86.93 0.60 3.43 16 11 N -1.01 -29.53 3.62 -506.01 -1.83 -31.36 16 12 S 2.63 102.42 5.65 -56.49 -0.32 102.10 16 13 O -1.00 -44.81 17.60 -127.65 -2.25 -47.06 16 14 O -1.00 -45.45 17.60 -127.65 -2.25 -47.70 16 15 C -0.58 -22.44 6.12 71.98 0.44 -22.00 16 16 C 0.02 1.05 4.98 29.85 0.15 1.19 16 17 C -0.54 -30.01 9.11 25.60 0.23 -29.78 16 18 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 19 C -0.01 -0.38 5.46 84.66 0.46 0.09 16 20 N -0.94 -57.62 13.29 21.45 0.28 -57.33 16 21 Si 0.98 43.35 29.54 68.60 2.03 45.38 16 22 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 24 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 25 C 0.11 2.53 6.66 86.73 0.58 3.11 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.68 8.11 -2.39 -0.02 0.66 16 35 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.14 4.81 8.14 -2.39 -0.02 4.79 16 40 H 0.15 4.80 8.14 -2.39 -0.02 4.79 16 41 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 42 H 0.00 0.26 8.14 -2.39 -0.02 0.25 16 43 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.06 1.67 8.07 -2.38 -0.02 1.66 16 Total: -1.00 -82.56 386.33 -1.42 -83.98 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.94 Total: 13.47 kcal Atomic # 6 Polarization: -47.07 SS G_CDS: 4.91 Total: -42.16 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -1.55 Total: -88.69 kcal Atomic # 8 Polarization: -106.65 SS G_CDS: -7.43 Total: -114.08 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 102.42 SS G_CDS: -0.32 Total: 102.10 kcal Total: -82.56 -1.42 -83.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152477887.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.825 kcal (2) G-P(sol) polarization free energy of solvation -82.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds