Wall clock time and date at job start Fri Apr 10 2020 14:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42900 * 109.47406 * 2 1 4 4 C 1.35990 * 117.00094 * 179.97438 * 3 2 1 5 5 C 1.38561 * 120.07819 * 0.27654 * 4 3 2 6 6 C 1.38240 * 120.00278 * 180.27688 * 5 4 3 7 7 C 1.38255 * 120.14545 * 359.71899 * 6 5 4 8 8 C 1.38245 * 120.14390 * 0.02562 * 7 6 5 9 9 C 1.38560 * 119.99896 * 359.97438 * 8 7 6 10 10 O 1.35994 * 120.06630 * 180.02562 * 9 8 7 11 11 C 1.42894 * 117.00657 * 0.02562 * 10 9 8 12 12 C 1.50696 * 109.47495 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99958 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00331 * 180.02562 * 12 11 10 15 15 C 1.47579 * 134.49442 * 179.97438 * 14 12 11 16 16 C 1.53953 * 86.11613 * 155.35662 * 15 14 12 17 17 O 1.42891 * 113.74249 * 269.15295 * 16 15 14 18 18 C 1.50704 * 113.73748 * 137.95211 * 16 15 14 19 19 H 1.07998 * 120.00120 * 3.90458 * 18 16 15 20 20 C 1.37883 * 119.99782 * 183.91187 * 18 16 15 21 21 N 1.31513 * 120.00053 * 185.23007 * 20 18 16 22 22 Si 1.86796 * 119.99938 * 5.22387 * 20 18 16 23 23 H 1.48495 * 109.47550 * 270.00395 * 22 20 18 24 24 H 1.48511 * 109.47116 * 30.00543 * 22 20 18 25 25 H 1.48499 * 109.47060 * 149.99973 * 22 20 18 26 26 C 1.47582 * 134.49131 * 359.97438 * 14 12 11 27 27 H 1.09000 * 109.47189 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47298 * 299.99876 * 1 2 3 29 29 H 1.08994 * 109.47154 * 60.00110 * 1 2 3 30 30 H 1.09008 * 109.47297 * 239.99616 * 2 1 3 31 31 H 1.09008 * 109.47236 * 120.00073 * 2 1 3 32 32 H 1.08005 * 119.99730 * 359.97438 * 5 4 3 33 33 H 1.08002 * 119.93007 * 179.74431 * 6 5 4 34 34 H 1.07996 * 119.92721 * 180.02562 * 7 6 5 35 35 H 1.08001 * 119.99406 * 179.97438 * 8 7 6 36 36 H 1.08998 * 109.47442 * 59.99929 * 11 10 9 37 37 H 1.09008 * 109.46872 * 299.99994 * 11 10 9 38 38 H 1.08998 * 113.77112 * 41.06103 * 15 14 12 39 39 H 1.09000 * 113.87384 * 269.66796 * 15 14 12 40 40 H 0.96707 * 113.99791 * 172.50486 * 17 16 15 41 41 H 0.97008 * 119.99681 * 354.94910 * 21 20 18 42 42 H 1.09003 * 113.77322 * 90.33860 * 26 14 12 43 43 H 1.09009 * 113.76717 * 318.93870 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5254 0.0005 5 6 4.2001 0.4277 -0.0047 6 6 5.5703 0.6105 0.0016 7 6 6.1003 1.8874 0.0074 8 6 5.2624 2.9869 0.0073 9 6 3.8880 2.8106 0.0010 10 8 3.0624 3.8912 0.0004 11 6 3.6802 5.1797 0.0060 12 6 2.6163 6.2470 0.0051 13 8 1.4443 5.9349 -0.0004 14 7 2.9670 7.5483 0.0092 15 6 2.2198 8.8209 0.0093 16 6 3.4742 9.4365 0.6557 17 8 3.4596 9.4050 2.0842 18 6 3.8405 10.7892 0.1015 19 1 3.2045 11.2626 -0.6318 20 6 4.9877 11.4223 0.5306 21 7 5.2547 12.6449 0.1261 22 14 6.1627 10.5436 1.6868 23 1 5.7780 10.8267 3.0928 24 1 6.0976 9.0805 1.4407 25 1 7.5467 11.0249 1.4457 26 6 4.2527 8.2729 0.0155 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7885 -0.5709 -0.0088 33 1 6.2282 -0.2460 0.0017 34 1 7.1713 2.0262 0.0119 35 1 5.6790 3.9833 0.0122 36 1 4.3041 5.2875 -0.8813 37 1 4.2971 5.2830 0.8987 38 1 1.3464 8.8175 0.6614 39 1 2.0050 9.2065 -0.9873 40 1 4.2907 9.6843 2.4922 41 1 4.6839 13.0739 -0.5306 42 1 4.6362 8.4960 -0.9802 43 1 5.0024 7.8318 0.6725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170601789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:23 Heat of formation + Delta-G solvation = -80.003323 kcal Electronic energy + Delta-G solvation = -26758.599327 eV Core-core repulsion = 22771.921257 eV Total energy + Delta-G solvation = -3986.678071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.74532 -39.85054 -38.73164 -37.58114 -36.77851 -34.46084 -32.66886 -32.15649 -30.56949 -30.21186 -29.17392 -27.46485 -25.65908 -24.83181 -24.11355 -22.45379 -21.76601 -20.17090 -19.01450 -18.65972 -18.04591 -17.53598 -16.78950 -16.54607 -16.21263 -16.03509 -15.90268 -15.22106 -15.04021 -14.83887 -14.77743 -14.05596 -13.72167 -13.48867 -13.40618 -12.99023 -12.85363 -12.79843 -12.52010 -12.30275 -12.14695 -12.10928 -12.03786 -11.48438 -11.44356 -11.20703 -11.13462 -10.95745 -10.85484 -10.45420 -9.99439 -9.57028 -9.46631 -9.06241 -8.95728 -8.62173 -8.12708 -7.96420 -6.76392 -4.52911 1.07466 1.25680 2.59955 2.91618 3.01177 3.04807 3.07747 3.26523 3.53787 3.65520 4.12065 4.49487 4.57543 4.67790 4.69460 4.73762 4.82412 4.84974 4.95166 5.00805 5.06651 5.12568 5.17661 5.18530 5.33472 5.48969 5.50476 5.56963 5.83632 5.91656 5.96134 5.98032 6.05929 6.14585 6.26365 6.27982 6.30531 6.47693 6.53804 6.94411 7.43113 7.45714 8.01802 8.14920 8.41011 8.48540 8.54999 9.22812 10.59550 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019549 B = 0.002914 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.922473 B = 9607.908484 C =10683.840285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.301 6.301 4 C 0.104 3.896 5 C -0.175 4.175 6 C -0.121 4.121 7 C -0.116 4.116 8 C -0.176 4.176 9 C 0.104 3.896 10 O -0.278 6.278 11 C 0.047 3.953 12 C 0.533 3.467 13 O -0.534 6.534 14 N -0.633 5.633 15 C 0.132 3.868 16 C 0.198 3.802 17 O -0.554 6.554 18 C -0.610 4.610 19 H 0.073 0.927 20 C 0.034 3.966 21 N -0.890 5.890 22 Si 1.032 2.968 23 H -0.275 1.275 24 H -0.268 1.268 25 H -0.279 1.279 26 C 0.055 3.945 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.355 0.645 41 H 0.274 0.726 42 H 0.096 0.904 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 -23.786 -0.690 23.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.214 6.214 4 C 0.058 3.942 5 C -0.194 4.194 6 C -0.139 4.139 7 C -0.134 4.134 8 C -0.194 4.194 9 C 0.058 3.942 10 O -0.190 6.190 11 C -0.032 4.032 12 C 0.321 3.679 13 O -0.411 6.411 14 N -0.370 5.370 15 C 0.010 3.990 16 C 0.157 3.843 17 O -0.363 6.363 18 C -0.648 4.648 19 H 0.091 0.909 20 C -0.174 4.174 21 N -0.522 5.522 22 Si 0.861 3.139 23 H -0.202 1.202 24 H -0.194 1.194 25 H -0.205 1.205 26 C -0.067 4.067 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.154 0.846 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.205 0.795 41 H 0.085 0.915 42 H 0.114 0.886 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.889 -24.005 0.060 24.080 hybrid contribution -0.356 -0.099 -0.904 0.977 sum 1.532 -24.105 -0.844 24.168 Atomic orbital electron populations 1.21762 0.92660 1.02559 1.03980 1.22784 0.96150 0.82222 1.00976 1.86265 1.17899 1.28602 1.88675 1.18227 0.83350 0.91008 1.01640 1.21048 0.94096 0.97255 1.07023 1.20835 0.94162 0.97324 1.01613 1.20862 0.99716 0.91834 1.01033 1.21166 0.91124 1.00702 1.06444 1.18370 0.89134 0.85447 1.01282 1.86262 1.32675 1.11572 1.88504 1.22431 0.95504 0.81767 1.03488 1.19482 0.89162 0.81800 0.77502 1.90709 1.19049 1.81125 1.50179 1.50047 1.12101 1.03128 1.71689 1.23288 0.97197 0.78082 1.00389 1.20496 0.91679 0.93104 0.79040 1.86470 1.39335 1.90134 1.20383 1.22262 1.10938 1.02913 1.28697 0.90932 1.25826 0.97283 0.95427 0.98833 1.70764 1.41601 1.11215 1.28666 0.84283 0.77372 0.75864 0.76402 1.20192 1.19433 1.20544 1.24840 0.87251 0.92450 1.02201 0.90514 0.91328 0.91359 0.92245 0.92228 0.84909 0.85656 0.85476 0.84594 0.89270 0.89265 0.90555 0.88922 0.79502 0.91517 0.88638 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.15 0.38 -0.87 16 2 C 0.05 0.50 5.46 37.15 0.20 0.71 16 3 O -0.30 -4.28 9.92 -34.21 -0.34 -4.62 16 4 C 0.10 1.41 6.70 -39.12 -0.26 1.15 16 5 C -0.18 -1.81 9.04 -39.46 -0.36 -2.16 16 6 C -0.12 -1.11 10.04 -39.57 -0.40 -1.51 16 7 C -0.12 -1.13 10.04 -39.57 -0.40 -1.53 16 8 C -0.18 -2.05 9.04 -39.46 -0.36 -2.41 16 9 C 0.10 1.52 6.70 -39.12 -0.26 1.26 16 10 O -0.28 -4.85 9.45 -47.35 -0.45 -5.30 16 11 C 0.05 0.73 4.97 36.00 0.18 0.91 16 12 C 0.53 10.60 8.13 -10.99 -0.09 10.51 16 13 O -0.53 -12.63 17.23 -14.35 -0.25 -12.87 16 14 N -0.63 -12.51 3.61 -178.30 -0.64 -13.15 16 15 C 0.13 2.74 8.23 -2.97 -0.02 2.72 16 16 C 0.20 4.38 1.06 -90.84 -0.10 4.29 16 17 O -0.55 -12.57 13.42 -35.23 -0.47 -13.04 16 18 C -0.61 -15.36 9.04 -34.44 -0.31 -15.67 16 19 H 0.07 1.95 8.04 -52.49 -0.42 1.53 16 20 C 0.03 0.87 5.47 -17.82 -0.10 0.78 16 21 N -0.89 -24.81 13.70 55.43 0.76 -24.06 16 22 Si 1.03 21.29 24.79 -169.99 -4.21 17.08 16 23 H -0.27 -5.43 6.95 56.52 0.39 -5.04 16 24 H -0.27 -4.78 4.86 56.52 0.27 -4.51 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 26 C 0.06 1.04 6.78 -2.97 -0.02 1.02 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.46 7.65 -51.92 -0.40 0.06 16 31 H 0.06 0.46 7.67 -51.92 -0.40 0.06 16 32 H 0.13 1.02 6.30 -52.48 -0.33 0.69 16 33 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.14 1.37 6.30 -52.49 -0.33 1.04 16 36 H 0.09 1.15 7.66 -51.93 -0.40 0.75 16 37 H 0.09 1.21 7.66 -51.92 -0.40 0.81 16 38 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 39 H 0.09 1.81 8.09 -51.93 -0.42 1.39 16 40 H 0.35 7.39 4.23 45.56 0.19 7.59 16 41 H 0.27 7.63 8.72 -40.82 -0.36 7.27 16 42 H 0.10 1.70 8.09 -51.93 -0.42 1.28 16 43 H 0.07 1.26 6.54 -51.92 -0.34 0.92 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -32.95 357.65 -7.61 -40.56 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -5.49 Total: 10.84 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.91 Total: -0.83 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.12 Total: -37.21 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -1.51 Total: -35.84 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.21 Total: 17.08 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.95 -7.61 -40.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170601789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.442 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds