Wall clock time and date at job start Fri Apr 10 2020 14:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42911 * 109.46670 * 2 1 4 4 C 1.42896 * 113.99651 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.90987 * 18.74960 * 4 3 2 6 6 C 1.53780 * 113.61311 * 247.49445 * 4 3 2 7 7 C 1.53785 * 87.07899 * 220.02308 * 6 4 3 8 8 H 1.09001 * 113.68966 * 139.99761 * 7 6 4 9 9 N 1.46503 * 113.61401 * 270.88286 * 7 6 4 10 10 S 1.65600 * 120.00062 * 242.50109 * 9 7 6 11 11 O 1.42098 * 104.27576 * 308.92781 * 10 9 7 12 12 O 1.42102 * 104.27841 * 181.06908 * 10 9 7 13 13 C 1.81404 * 104.45074 * 64.99734 * 10 9 7 14 14 C 1.53000 * 109.46946 * 180.02562 * 13 10 9 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00162 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99868 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47023 * 90.00014 * 20 18 16 22 22 H 1.48496 * 109.47251 * 210.00457 * 20 18 16 23 23 H 1.48498 * 109.47139 * 330.00202 * 20 18 16 24 24 C 1.53777 * 87.08340 * 25.43245 * 7 6 4 25 25 H 1.09004 * 113.61624 * 89.11542 * 24 7 6 26 26 O 1.42897 * 113.61592 * 220.02010 * 24 7 6 27 27 C 1.42897 * 114.00261 * 210.00366 * 26 24 7 28 28 H 1.08997 * 109.46893 * 60.00736 * 1 2 3 29 29 H 1.09007 * 109.46345 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47355 * 300.00190 * 1 2 3 31 31 H 1.08991 * 109.47355 * 239.99810 * 2 1 3 32 32 H 1.08997 * 109.46893 * 119.99264 * 2 1 3 33 33 H 1.09000 * 113.61376 * 105.47553 * 6 4 3 34 34 H 1.09000 * 113.61214 * 334.56615 * 6 4 3 35 35 H 0.96993 * 119.99757 * 62.49364 * 9 7 6 36 36 H 1.09002 * 109.47124 * 60.00022 * 13 10 9 37 37 H 1.09001 * 109.46975 * 300.00144 * 13 10 9 38 38 H 1.09001 * 109.47194 * 299.99756 * 14 13 10 39 39 H 1.08992 * 109.47399 * 59.99928 * 14 13 10 40 40 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 41 41 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 42 42 H 0.96996 * 119.99309 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.47318 * 59.99356 * 27 26 24 44 44 H 1.09000 * 109.47446 * 180.02562 * 27 26 24 45 45 H 1.09002 * 109.46571 * 299.99757 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4603 0.0006 5 1 3.9290 0.5460 -0.3218 6 6 4.0017 2.0468 1.3025 7 6 4.9894 2.8317 0.4231 8 1 5.1623 3.8529 0.7629 9 7 6.2318 2.1068 0.1452 10 16 7.6799 2.7132 0.6720 11 8 7.6847 4.0579 0.2125 12 8 8.6421 1.7767 0.2069 13 6 7.5620 2.6593 2.4814 14 6 8.8554 3.2013 3.0931 15 6 8.7561 3.1552 4.6192 16 6 10.0303 3.6885 5.2218 17 1 10.8310 4.0261 4.5804 18 6 10.1739 3.7454 6.5919 19 7 11.2861 4.2103 7.1178 20 14 8.7888 3.1622 7.7012 21 1 8.9629 1.7164 7.9921 22 1 8.8159 3.9297 8.9722 23 1 7.4862 3.3768 7.0212 24 6 3.9488 2.7253 -0.7040 25 1 3.2302 3.5449 -0.7137 26 8 4.5204 2.4715 -1.9888 27 6 3.7686 3.0130 -3.0767 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 4.4806 1.3055 1.9422 34 1 3.2977 2.6809 1.8412 35 1 6.2061 1.2716 -0.3473 36 1 7.4101 1.6296 2.8051 37 1 6.7213 3.2709 2.8090 38 1 9.6963 2.5901 2.7655 39 1 9.0068 4.2310 2.7694 40 1 7.9152 3.7663 4.9472 41 1 8.6049 2.1254 4.9426 42 1 11.3869 4.2507 8.0817 43 1 3.6957 4.0949 -2.9651 44 1 4.2679 2.7772 -4.0165 45 1 2.7684 2.5797 -3.0784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356258617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:46 Heat of formation + Delta-G solvation = -151.182300 kcal Electronic energy + Delta-G solvation = -25692.989899 eV Core-core repulsion = 21838.669227 eV Total energy + Delta-G solvation = -3854.320671 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.45634 -37.63257 -36.93822 -36.39601 -35.77584 -34.81273 -32.70590 -32.21588 -31.02050 -28.38712 -27.36199 -24.84632 -24.68093 -23.60114 -23.16303 -20.61735 -20.27463 -19.36647 -18.03744 -17.42987 -16.92592 -16.85083 -16.20998 -15.98743 -15.85103 -15.74868 -15.34360 -14.93363 -14.38036 -14.19807 -13.85492 -13.54220 -13.35763 -13.17003 -12.92815 -12.66995 -12.48730 -12.34330 -12.14119 -12.01606 -11.91424 -11.85264 -11.73650 -11.58959 -11.55003 -11.25841 -11.22666 -10.97303 -10.94964 -10.21949 -10.09996 -9.93549 -9.85002 -9.60498 -9.34905 -9.24361 -8.59074 -6.08670 -4.07924 0.38954 2.70892 3.13123 3.26105 3.33693 3.35530 3.63587 3.87616 4.04874 4.10989 4.30408 4.39891 4.40756 4.54767 4.66635 4.77291 4.80471 4.91806 4.96910 5.01083 5.08963 5.11555 5.14235 5.19157 5.25278 5.34211 5.38747 5.48071 5.54785 5.58797 5.70396 5.74867 5.87636 6.14087 6.26348 6.66488 6.71007 6.81493 7.00316 7.12264 7.26300 7.70834 8.47493 8.95964 9.52416 11.04663 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.003046 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.416880 B = 9189.031613 C =10603.602708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.375 6.375 4 C 0.049 3.951 5 H 0.096 0.904 6 C -0.174 4.174 7 C 0.134 3.866 8 H 0.118 0.882 9 N -1.096 6.096 10 S 2.604 3.396 11 O -0.957 6.957 12 O -0.959 6.959 13 C -0.616 4.616 14 C -0.098 4.098 15 C -0.004 4.004 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.067 3.933 19 N -0.900 5.900 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.266 1.266 24 C 0.063 3.937 25 H 0.107 0.893 26 O -0.366 6.366 27 C 0.029 3.971 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.418 0.582 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.020 0.980 41 H 0.015 0.985 42 H 0.264 0.736 43 H 0.044 0.956 44 H 0.085 0.915 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.178 -7.550 -17.149 29.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.294 6.294 4 C -0.009 4.009 5 H 0.114 0.886 6 C -0.214 4.214 7 C 0.024 3.976 8 H 0.136 0.864 9 N -0.852 5.852 10 S 2.699 3.301 11 O -0.947 6.947 12 O -0.949 6.949 13 C -0.747 4.747 14 C -0.137 4.137 15 C -0.043 4.043 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.135 4.135 19 N -0.539 5.539 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.190 1.190 24 C 0.003 3.997 25 H 0.124 0.876 26 O -0.284 6.284 27 C -0.067 4.067 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.124 0.876 35 H 0.252 0.748 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.038 0.962 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.104 0.896 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -22.324 -6.986 -17.511 29.220 hybrid contribution -1.215 -0.970 1.091 1.900 sum -23.540 -7.956 -16.420 29.783 Atomic orbital electron populations 1.21752 0.93757 1.02296 1.03093 1.22530 0.95570 0.83830 1.00184 1.87924 1.20389 1.26560 1.94561 1.24427 0.81313 0.99077 0.96083 0.88632 1.23901 0.98881 1.01395 0.97238 1.21749 0.84236 0.96614 0.95008 0.86390 1.55349 1.21434 1.37045 1.71339 1.05273 0.72496 0.74312 0.78025 1.93582 1.85355 1.36898 1.78840 1.93590 1.58236 1.63505 1.79590 1.30644 1.09232 1.10898 1.23959 1.21314 0.91323 1.00816 1.00271 1.19527 0.98180 0.96812 0.89755 1.21139 1.00640 1.42426 0.92290 0.90726 1.25031 0.95567 0.94695 0.98158 1.69915 1.25776 1.46394 1.11808 0.86769 0.83246 0.79005 0.80187 1.20250 1.21285 1.19043 1.24492 0.94812 0.97210 0.83235 0.87565 1.87956 1.49510 1.77266 1.13651 1.22837 0.96029 0.97887 0.89996 0.91954 0.91118 0.91775 0.93361 0.93180 0.89188 0.87572 0.74779 0.85267 0.85439 0.90993 0.90932 0.96168 0.96631 0.92629 0.93699 0.89612 0.93925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.06 0.38 6.50 37.16 0.24 0.62 16 3 O -0.38 -3.30 10.35 -35.23 -0.36 -3.66 16 4 C 0.05 0.40 3.96 -25.92 -0.10 0.30 16 5 H 0.10 0.74 7.84 -51.93 -0.41 0.33 16 6 C -0.17 -1.33 7.71 -25.92 -0.20 -1.52 16 7 C 0.13 1.23 4.35 -67.12 -0.29 0.93 16 8 H 0.12 1.02 7.76 -51.93 -0.40 0.62 16 9 N -1.10 -11.55 5.23 -4.20 -0.02 -11.57 16 10 S 2.60 36.77 5.43 -107.50 -0.58 36.18 16 11 O -0.96 -16.46 17.58 -57.54 -1.01 -17.48 16 12 O -0.96 -16.56 18.08 -57.54 -1.04 -17.60 16 13 C -0.62 -8.57 6.07 37.16 0.23 -8.35 16 14 C -0.10 -1.88 5.16 -26.73 -0.14 -2.02 16 15 C 0.00 -0.09 4.04 -27.88 -0.11 -0.21 16 16 C -0.53 -14.94 9.66 -34.44 -0.33 -15.27 16 17 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 19 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 20 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 24 C 0.06 0.56 4.06 -25.92 -0.11 0.46 16 25 H 0.11 0.83 7.87 -51.93 -0.41 0.42 16 26 O -0.37 -3.75 10.19 -35.23 -0.36 -4.11 16 27 C 0.03 0.22 10.85 101.05 1.10 1.32 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.42 3.91 8.63 -34.47 -0.30 3.61 16 36 H 0.13 1.53 8.14 -51.92 -0.42 1.11 16 37 H 0.13 1.49 8.14 -51.92 -0.42 1.07 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 41 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 384.30 15.07 5.79 5.79 Total: -1.00 -36.58 384.30 -8.71 -45.29 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.79 Total: -0.21 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 0.56 Total: -22.37 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.75 Total: -38.47 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -2.78 Total: -42.84 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Atomic # 16 Polarization: 36.77 SS G_CDS: -0.58 Total: 36.18 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.58 -8.71 -45.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356258617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.897 kcal (2) G-P(sol) polarization free energy of solvation -36.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds