Wall clock time and date at job start Fri Apr 10 2020 14:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 117.00456 * 2 1 4 4 O 1.20833 * 119.99692 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00559 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47082 * 39.99800 * 5 3 2 7 7 C 1.53009 * 109.47070 * 280.00067 * 5 3 2 8 8 H 1.08999 * 109.46936 * 43.17660 * 7 5 3 9 9 C 1.52998 * 109.47149 * 163.17783 * 7 5 3 10 10 O 1.42901 * 109.46866 * 283.17820 * 7 5 3 11 11 N 1.46499 * 109.47362 * 160.00043 * 5 3 2 12 12 C 1.46502 * 119.99971 * 231.02422 * 11 5 3 13 13 C 1.50699 * 109.47067 * 89.99533 * 12 11 5 14 14 C 1.38231 * 120.00166 * 269.72624 * 13 12 11 15 15 C 1.38233 * 119.99773 * 179.76654 * 14 13 12 16 16 C 1.38238 * 120.00291 * 0.51182 * 15 14 13 17 17 C 1.38241 * 119.99421 * 359.74315 * 16 15 14 18 18 C 1.38229 * 120.00365 * 0.02562 * 17 16 15 19 19 C 1.34771 * 120.00276 * 51.02035 * 11 5 3 20 20 O 1.21688 * 119.99933 * 184.82310 * 19 11 5 21 21 C 1.46382 * 119.99914 * 4.83317 * 19 11 5 22 22 H 1.07997 * 119.99771 * 356.24505 * 21 19 11 23 23 C 1.40050 * 119.99865 * 176.25213 * 21 19 11 24 24 N 1.30670 * 120.00037 * 359.97438 * 23 21 19 25 25 Si 1.86801 * 119.99734 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46939 * 59.99538 * 25 23 21 27 27 H 1.48495 * 109.46934 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.46998 * 299.99865 * 25 23 21 29 29 H 1.08997 * 109.47193 * 59.99531 * 1 2 3 30 30 H 1.08998 * 109.46910 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46598 * 299.99898 * 1 2 3 32 32 H 1.08999 * 109.47302 * 60.00101 * 9 7 5 33 33 H 1.09000 * 109.46927 * 179.97438 * 9 7 5 34 34 H 1.08991 * 109.47356 * 300.00197 * 9 7 5 35 35 H 0.96700 * 114.00321 * 300.28959 * 10 7 5 36 36 H 1.09000 * 109.47183 * 210.00160 * 12 11 5 37 37 H 1.09009 * 109.47025 * 329.99711 * 12 11 5 38 38 H 1.07994 * 120.00203 * 0.02562 * 14 13 12 39 39 H 1.08004 * 120.00183 * 180.23321 * 15 14 13 40 40 H 1.07997 * 119.99928 * 179.72781 * 16 15 14 41 41 H 1.08001 * 119.99424 * 179.97438 * 17 16 15 42 42 H 1.07996 * 119.99995 * 179.97438 * 18 17 16 43 43 H 0.97002 * 119.99783 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9701 0.5078 -0.6614 7 6 4.0893 1.0510 1.4198 8 1 3.5465 0.2260 1.8811 9 6 5.5808 0.7140 1.3670 10 8 3.8964 2.2385 2.1910 11 7 3.9859 2.5966 -0.4729 12 6 4.9775 2.7105 -1.5453 13 6 4.2750 2.7354 -2.8783 14 6 4.0298 1.5539 -3.5526 15 6 3.3812 1.5765 -4.7731 16 6 2.9871 2.7814 -5.3243 17 6 3.2371 3.9634 -4.6524 18 6 3.8814 3.9405 -3.4297 19 6 3.4597 3.7078 0.0791 20 8 3.7412 4.8027 -0.3711 21 6 2.5498 3.5976 1.2205 22 1 2.2523 2.6243 1.5818 23 6 2.0649 4.7543 1.8436 24 7 2.4252 5.9318 1.4065 25 14 0.9031 4.6136 3.2996 26 1 1.5720 3.8686 4.3964 27 1 0.5388 5.9724 3.7751 28 1 -0.3243 3.8880 2.8851 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 6.1236 1.5390 0.9057 33 1 5.9534 0.5550 2.3789 34 1 5.7280 -0.1917 0.7787 35 1 4.3484 3.0160 1.8358 36 1 5.5470 3.6310 -1.4173 37 1 5.6539 1.8565 -1.5070 38 1 4.3413 0.6129 -3.1240 39 1 3.1862 0.6531 -5.2982 40 1 2.4843 2.7993 -6.2799 41 1 2.9296 4.9048 -5.0832 42 1 4.0770 4.8639 -2.9050 43 1 2.0896 6.7330 1.8384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426085862.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:30 Heat of formation + Delta-G solvation = -79.408369 kcal Electronic energy + Delta-G solvation = -29678.773760 eV Core-core repulsion = 25692.121489 eV Total energy + Delta-G solvation = -3986.652271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.41416 -38.91770 -38.03269 -35.94948 -35.53725 -34.12249 -32.17329 -31.47972 -30.47603 -30.22610 -28.17389 -26.89357 -26.04291 -24.52390 -22.21057 -21.61345 -21.23891 -20.56335 -19.11922 -17.30970 -16.71372 -16.44425 -16.28241 -16.22589 -15.25241 -15.10093 -14.84722 -14.58940 -14.49941 -14.02958 -13.83621 -13.40302 -13.02014 -12.98806 -12.79092 -12.43642 -12.31042 -12.11216 -12.07653 -11.66100 -11.56268 -11.37731 -11.26149 -11.07118 -10.95207 -10.83280 -10.67877 -10.56530 -10.25886 -10.16027 -10.05313 -9.47791 -8.55435 -8.52681 -8.48143 -8.18842 -7.55452 -7.38523 -6.05786 -4.10949 1.71915 1.82575 3.08291 3.19726 3.31286 3.32626 3.36729 4.02555 4.30974 4.52335 4.58098 5.08499 5.18531 5.23151 5.28734 5.33807 5.35937 5.47932 5.51442 5.57517 5.60455 5.63540 5.72401 5.74503 5.87521 5.89576 5.98165 6.06756 6.10061 6.28040 6.31145 6.41573 6.49668 6.54198 6.80583 6.93253 7.05912 7.12317 7.35566 7.44476 7.68280 8.05352 8.50659 8.66179 8.70460 9.21408 9.32295 10.57391 10.83934 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011832 B = 0.006333 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.988027 B = 4420.155664 C = 4915.086305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.380 6.380 3 C 0.405 3.595 4 O -0.417 6.417 5 C 0.151 3.849 6 H 0.098 0.902 7 C 0.091 3.909 8 H 0.094 0.906 9 C -0.178 4.178 10 O -0.533 6.533 11 N -0.627 5.627 12 C 0.161 3.839 13 C -0.092 4.092 14 C -0.116 4.116 15 C -0.131 4.131 16 C -0.129 4.129 17 C -0.126 4.126 18 C -0.084 4.084 19 C 0.544 3.456 20 O -0.565 6.565 21 C -0.460 4.460 22 H 0.106 0.894 23 C 0.074 3.926 24 N -0.776 5.776 25 Si 0.904 3.096 26 H -0.267 1.267 27 H -0.287 1.287 28 H -0.274 1.274 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.389 0.611 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.133 0.867 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 -12.153 -5.693 13.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.298 6.298 3 C 0.243 3.757 4 O -0.297 6.297 5 C 0.042 3.958 6 H 0.116 0.884 7 C 0.029 3.971 8 H 0.111 0.889 9 C -0.235 4.235 10 O -0.348 6.348 11 N -0.367 5.367 12 C 0.038 3.962 13 C -0.093 4.093 14 C -0.135 4.135 15 C -0.149 4.149 16 C -0.147 4.147 17 C -0.144 4.144 18 C -0.103 4.103 19 C 0.353 3.647 20 O -0.447 6.447 21 C -0.496 4.496 22 H 0.123 0.877 23 C -0.143 4.143 24 N -0.409 5.409 25 Si 0.730 3.270 26 H -0.192 1.192 27 H -0.212 1.212 28 H -0.199 1.199 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.248 0.752 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.151 0.849 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.593 -11.349 -5.534 12.890 hybrid contribution -0.795 0.162 0.193 0.834 sum 1.798 -11.187 -5.342 12.527 Atomic orbital electron populations 1.23025 0.77979 1.02253 1.02168 1.86452 1.22158 1.35305 1.85921 1.24329 0.92678 0.81324 0.77336 1.91054 1.66605 1.33849 1.38154 1.20901 0.87361 0.88776 0.98738 0.88417 1.22008 0.94519 0.90982 0.89560 0.88852 1.22483 0.97155 1.01641 1.02250 1.87166 1.74301 1.17939 1.55389 1.48335 1.45585 1.04560 1.38190 1.20134 0.90259 1.02343 0.83468 1.20526 0.99293 0.93044 0.96481 1.20975 0.99853 0.97373 0.95274 1.20982 1.00071 0.97492 0.96373 1.21033 1.00953 0.92898 0.99837 1.21156 0.99592 0.97875 0.95819 1.21325 0.95872 0.98818 0.94238 1.18500 0.81414 0.81169 0.83659 1.90602 1.63812 1.25368 1.64953 1.21617 1.23381 0.94339 1.10289 0.87716 1.25746 0.95891 0.95023 0.97623 1.70035 1.36913 0.97857 1.36046 0.86470 0.81159 0.77226 0.82190 1.19200 1.21240 1.19877 0.92669 0.89208 0.92388 0.92090 0.91902 0.92394 0.75190 0.89403 0.91638 0.86834 0.86828 0.86901 0.86630 0.84943 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.56 101.05 1.07 1.65 16 2 O -0.38 -6.54 10.56 -39.24 -0.41 -6.96 16 3 C 0.41 8.23 6.13 36.00 0.22 8.45 16 4 O -0.42 -10.32 11.41 -18.76 -0.21 -10.54 16 5 C 0.15 2.68 2.54 -69.08 -0.18 2.51 16 6 H 0.10 1.42 7.77 -51.93 -0.40 1.02 16 7 C 0.09 1.51 3.31 -26.73 -0.09 1.42 16 8 H 0.09 1.46 8.02 -51.93 -0.42 1.04 16 9 C -0.18 -2.33 9.44 37.16 0.35 -1.98 16 10 O -0.53 -11.25 9.26 -35.23 -0.33 -11.58 16 11 N -0.63 -12.83 2.23 -170.44 -0.38 -13.21 16 12 C 0.16 2.85 5.44 -5.19 -0.03 2.82 16 13 C -0.09 -1.64 5.46 -104.62 -0.57 -2.21 16 14 C -0.12 -1.79 9.70 -39.59 -0.38 -2.17 16 15 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 16 C -0.13 -1.91 10.05 -39.58 -0.40 -2.30 16 17 C -0.13 -2.11 10.05 -39.58 -0.40 -2.50 16 18 C -0.08 -1.61 9.57 -39.58 -0.38 -1.98 16 19 C 0.54 14.14 5.26 -12.99 -0.07 14.07 16 20 O -0.57 -16.74 13.86 5.20 0.07 -16.67 16 21 C -0.46 -12.33 3.21 -35.63 -0.11 -12.44 16 22 H 0.11 2.74 3.30 -51.58 -0.17 2.57 16 23 C 0.07 2.07 5.50 -17.37 -0.10 1.98 16 24 N -0.78 -22.93 11.84 55.55 0.66 -22.27 16 25 Si 0.90 21.53 29.56 -169.99 -5.02 16.51 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 28 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 29 H 0.05 0.83 8.13 -51.93 -0.42 0.40 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.39 8.89 5.64 46.53 0.26 9.16 16 36 H 0.09 1.68 7.44 -51.93 -0.39 1.30 16 37 H 0.07 0.91 7.95 -51.92 -0.41 0.50 16 38 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 40 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.13 2.83 7.38 -52.49 -0.39 2.45 16 43 H 0.26 7.27 8.29 -40.82 -0.34 6.94 16 LS Contribution 353.16 15.07 5.32 5.32 Total: -1.00 -34.09 353.16 -7.04 -41.13 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -5.27 Total: 13.24 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -1.46 Total: 5.03 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.28 Total: -35.49 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -0.88 Total: -45.74 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.09 -7.04 -41.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426085862.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.279 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds