Wall clock time and date at job start Fri Apr 10 2020 14:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 117.00456 * 2 1 4 4 O 1.20833 * 119.99692 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00559 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47082 * 39.99800 * 5 3 2 7 7 C 1.53009 * 109.47070 * 280.00067 * 5 3 2 8 8 H 1.08999 * 109.46936 * 43.17660 * 7 5 3 9 9 C 1.52998 * 109.47149 * 163.17783 * 7 5 3 10 10 O 1.42901 * 109.46866 * 283.17820 * 7 5 3 11 11 N 1.46499 * 109.47362 * 160.00043 * 5 3 2 12 12 C 1.46502 * 119.99971 * 231.02422 * 11 5 3 13 13 C 1.50699 * 109.47067 * 89.99533 * 12 11 5 14 14 C 1.38231 * 120.00166 * 269.72624 * 13 12 11 15 15 C 1.38233 * 119.99773 * 179.76654 * 14 13 12 16 16 C 1.38238 * 120.00291 * 0.51182 * 15 14 13 17 17 C 1.38241 * 119.99421 * 359.74315 * 16 15 14 18 18 C 1.38229 * 120.00365 * 0.02562 * 17 16 15 19 19 C 1.34771 * 120.00276 * 51.02035 * 11 5 3 20 20 O 1.21688 * 119.99933 * 184.82310 * 19 11 5 21 21 C 1.46382 * 119.99914 * 4.83317 * 19 11 5 22 22 H 1.07997 * 119.99771 * 356.24505 * 21 19 11 23 23 C 1.40050 * 119.99865 * 176.25213 * 21 19 11 24 24 N 1.30670 * 120.00037 * 359.97438 * 23 21 19 25 25 Si 1.86801 * 119.99734 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46939 * 59.99538 * 25 23 21 27 27 H 1.48495 * 109.46934 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.46998 * 299.99865 * 25 23 21 29 29 H 1.08997 * 109.47193 * 59.99531 * 1 2 3 30 30 H 1.08998 * 109.46910 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46598 * 299.99898 * 1 2 3 32 32 H 1.08999 * 109.47302 * 60.00101 * 9 7 5 33 33 H 1.09000 * 109.46927 * 179.97438 * 9 7 5 34 34 H 1.08991 * 109.47356 * 300.00197 * 9 7 5 35 35 H 0.96700 * 114.00321 * 300.28959 * 10 7 5 36 36 H 1.09000 * 109.47183 * 210.00160 * 12 11 5 37 37 H 1.09009 * 109.47025 * 329.99711 * 12 11 5 38 38 H 1.07994 * 120.00203 * 0.02562 * 14 13 12 39 39 H 1.08004 * 120.00183 * 180.23321 * 15 14 13 40 40 H 1.07997 * 119.99928 * 179.72781 * 16 15 14 41 41 H 1.08001 * 119.99424 * 179.97438 * 17 16 15 42 42 H 1.07996 * 119.99995 * 179.97438 * 18 17 16 43 43 H 0.97002 * 119.99783 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9701 0.5078 -0.6614 7 6 4.0893 1.0510 1.4198 8 1 3.5465 0.2260 1.8811 9 6 5.5808 0.7140 1.3670 10 8 3.8964 2.2385 2.1910 11 7 3.9859 2.5966 -0.4729 12 6 4.9775 2.7105 -1.5453 13 6 4.2750 2.7354 -2.8783 14 6 4.0298 1.5539 -3.5526 15 6 3.3812 1.5765 -4.7731 16 6 2.9871 2.7814 -5.3243 17 6 3.2371 3.9634 -4.6524 18 6 3.8814 3.9405 -3.4297 19 6 3.4597 3.7078 0.0791 20 8 3.7412 4.8027 -0.3711 21 6 2.5498 3.5976 1.2205 22 1 2.2523 2.6243 1.5818 23 6 2.0649 4.7543 1.8436 24 7 2.4252 5.9318 1.4065 25 14 0.9031 4.6136 3.2996 26 1 1.5720 3.8686 4.3964 27 1 0.5388 5.9724 3.7751 28 1 -0.3243 3.8880 2.8851 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 6.1236 1.5390 0.9057 33 1 5.9534 0.5550 2.3789 34 1 5.7280 -0.1917 0.7787 35 1 4.3484 3.0160 1.8358 36 1 5.5470 3.6310 -1.4173 37 1 5.6539 1.8565 -1.5070 38 1 4.3413 0.6129 -3.1240 39 1 3.1862 0.6531 -5.2982 40 1 2.4843 2.7993 -6.2799 41 1 2.9296 4.9048 -5.0832 42 1 4.0770 4.8639 -2.9050 43 1 2.0896 6.7330 1.8384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426085862.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:29 Heat of formation + Delta-G solvation = -102.706429 kcal Electronic energy + Delta-G solvation = -29679.784040 eV Core-core repulsion = 25692.121489 eV Total energy + Delta-G solvation = -3987.662551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.00487 -40.30514 -39.51013 -37.69748 -37.12811 -35.79931 -34.20327 -32.86457 -31.73068 -31.64185 -29.49573 -28.56351 -27.50045 -26.10178 -23.47494 -22.96639 -22.75802 -21.99440 -20.84734 -18.84213 -18.46463 -18.09514 -17.82069 -17.60367 -16.73902 -16.70393 -16.24228 -16.09983 -15.86775 -15.62158 -15.29439 -14.88462 -14.59964 -14.24043 -14.18994 -14.00497 -13.80749 -13.60496 -13.41663 -13.11307 -13.00185 -12.83017 -12.80408 -12.73419 -12.55907 -12.45006 -12.12960 -12.07007 -11.82497 -11.65191 -11.53567 -11.07092 -10.58680 -10.12417 -9.77070 -9.73406 -9.38315 -9.19148 -8.09639 -6.14454 0.46169 0.55974 1.35699 1.37519 1.46292 1.52662 1.81571 2.31751 2.58557 2.67142 3.08920 3.65311 3.83444 3.92303 3.96282 4.02076 4.17791 4.21180 4.29058 4.33272 4.37643 4.42674 4.43540 4.47547 4.50963 4.65202 4.75012 4.81456 4.86411 5.01272 5.16365 5.18282 5.22406 5.41991 5.58545 5.59359 5.62600 5.65250 5.70165 5.89615 6.19217 6.25169 6.50768 7.01100 7.12025 7.18438 7.43258 8.59683 8.83685 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011832 B = 0.006333 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.988027 B = 4420.155664 C = 4915.086305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.367 6.367 3 C 0.410 3.590 4 O -0.475 6.475 5 C 0.146 3.854 6 H 0.146 0.854 7 C 0.084 3.916 8 H 0.111 0.889 9 C -0.167 4.167 10 O -0.557 6.557 11 N -0.622 5.622 12 C 0.162 3.838 13 C -0.110 4.110 14 C -0.113 4.113 15 C -0.126 4.126 16 C -0.127 4.127 17 C -0.141 4.141 18 C -0.120 4.120 19 C 0.544 3.456 20 O -0.613 6.613 21 C -0.457 4.457 22 H 0.113 0.887 23 C 0.017 3.983 24 N -0.831 5.831 25 Si 0.964 3.036 26 H -0.256 1.256 27 H -0.283 1.283 28 H -0.277 1.277 29 H 0.047 0.953 30 H 0.138 0.862 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.379 0.621 36 H 0.057 0.943 37 H 0.115 0.885 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.145 0.855 41 H 0.121 0.879 42 H 0.088 0.912 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.145 -17.157 -6.636 18.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.284 6.284 3 C 0.250 3.750 4 O -0.358 6.358 5 C 0.039 3.961 6 H 0.163 0.837 7 C 0.023 3.977 8 H 0.129 0.871 9 C -0.225 4.225 10 O -0.370 6.370 11 N -0.360 5.360 12 C 0.040 3.960 13 C -0.112 4.112 14 C -0.132 4.132 15 C -0.143 4.143 16 C -0.145 4.145 17 C -0.159 4.159 18 C -0.139 4.139 19 C 0.352 3.648 20 O -0.499 6.499 21 C -0.494 4.494 22 H 0.130 0.870 23 C -0.194 4.194 24 N -0.467 5.467 25 Si 0.788 3.212 26 H -0.181 1.181 27 H -0.208 1.208 28 H -0.203 1.203 29 H 0.066 0.934 30 H 0.156 0.844 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.235 0.765 36 H 0.076 0.924 37 H 0.133 0.867 38 H 0.167 0.833 39 H 0.172 0.828 40 H 0.163 0.837 41 H 0.139 0.861 42 H 0.106 0.894 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.731 -16.449 -6.475 17.887 hybrid contribution -0.845 1.480 0.329 1.736 sum 1.886 -14.969 -6.146 16.291 Atomic orbital electron populations 1.23338 0.76328 1.05090 1.01228 1.86439 1.23666 1.33286 1.85041 1.24819 0.93666 0.81345 0.75149 1.91050 1.67822 1.35866 1.41080 1.21300 0.86163 0.88126 1.00557 0.83656 1.22358 0.97473 0.89596 0.88266 0.87103 1.22388 0.93694 1.02920 1.03475 1.87041 1.74879 1.19042 1.55989 1.47915 1.45276 1.04526 1.38240 1.20284 0.89920 1.03031 0.82788 1.20564 1.00230 0.93593 0.96771 1.21330 0.99045 0.97368 0.95429 1.21492 0.98209 0.98738 0.95886 1.21431 1.00107 0.92185 1.00732 1.21331 0.99718 0.99576 0.95320 1.21201 0.98771 0.98147 0.95798 1.18542 0.81012 0.81784 0.83511 1.90576 1.65213 1.27943 1.66167 1.21895 1.23030 0.94334 1.10135 0.86995 1.26634 0.97566 0.94915 1.00316 1.70206 1.39607 0.98555 1.38286 0.85538 0.78944 0.77254 0.79425 1.18051 1.20817 1.20260 0.93411 0.84386 0.93700 0.93024 0.91234 0.88539 0.76524 0.92402 0.86736 0.83341 0.82849 0.83698 0.86084 0.89382 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 10.56 113.37 1.20 2.09 16 2 O -0.37 -11.38 10.56 -51.37 -0.54 -11.92 16 3 C 0.41 15.85 6.13 71.23 0.44 16.29 16 4 O -0.47 -23.64 11.41 21.94 0.25 -23.39 16 5 C 0.15 4.78 2.54 44.25 0.11 4.89 16 6 H 0.15 3.38 7.77 -2.39 -0.02 3.36 16 7 C 0.08 2.55 3.31 30.60 0.10 2.65 16 8 H 0.11 3.02 8.02 -2.39 -0.02 3.01 16 9 C -0.17 -3.71 9.44 71.98 0.68 -3.03 16 10 O -0.56 -23.33 9.26 -148.98 -1.38 -24.71 16 11 N -0.62 -25.30 2.23 -811.37 -1.81 -27.11 16 12 C 0.16 5.66 5.44 85.63 0.47 6.12 16 13 C -0.11 -3.86 5.46 -19.87 -0.11 -3.97 16 14 C -0.11 -3.06 9.70 22.27 0.22 -2.85 16 15 C -0.13 -3.07 10.05 22.27 0.22 -2.84 16 16 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 17 C -0.14 -4.79 10.05 22.27 0.22 -4.57 16 18 C -0.12 -4.86 9.57 22.27 0.21 -4.65 16 19 C 0.54 29.52 5.26 86.36 0.45 29.97 16 20 O -0.61 -39.04 13.86 -4.31 -0.06 -39.10 16 21 C -0.46 -25.34 3.21 24.83 0.08 -25.26 16 22 H 0.11 5.93 3.30 -2.34 -0.01 5.92 16 23 C 0.02 0.98 5.50 85.31 0.47 1.45 16 24 N -0.83 -52.37 11.84 21.84 0.26 -52.11 16 25 Si 0.96 46.00 29.56 68.60 2.03 48.03 16 26 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 28 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 29 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16 30 H 0.14 2.30 8.14 -2.39 -0.02 2.29 16 31 H 0.04 1.31 8.13 -2.39 -0.02 1.29 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.38 17.81 5.64 -72.47 -0.41 17.41 16 36 H 0.06 2.35 7.44 -2.39 -0.02 2.33 16 37 H 0.11 2.79 7.95 -2.38 -0.02 2.77 16 38 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 39 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 41 H 0.12 3.76 8.06 -2.91 -0.02 3.74 16 42 H 0.09 4.25 7.38 -2.91 -0.02 4.23 16 43 H 0.26 15.41 8.29 -92.71 -0.77 14.64 16 Total: -1.00 -82.52 353.16 4.36 -78.16 By element: Atomic # 1 Polarization: 38.41 SS G_CDS: 0.63 Total: 39.04 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 4.99 Total: 13.11 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -1.55 Total: -79.22 kcal Atomic # 8 Polarization: -97.39 SS G_CDS: -1.73 Total: -99.12 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -82.52 4.36 -78.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426085862.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.549 kcal (2) G-P(sol) polarization free energy of solvation -82.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds