Wall clock time and date at job start Fri Apr 10 2020 14:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47231 * 2 1 4 4 O 1.42898 * 109.47166 * 239.99725 * 2 1 3 5 5 C 1.42905 * 113.99940 * 221.24503 * 4 2 1 6 6 C 1.53001 * 110.45944 * 291.44357 * 5 4 2 7 7 S 1.81394 * 109.46973 * 295.91135 * 6 5 4 8 8 O 1.42101 * 110.54444 * 291.61944 * 7 6 5 9 9 O 1.42099 * 110.54408 * 68.37621 * 7 6 5 10 10 N 1.65601 * 104.44796 * 179.97438 * 7 6 5 11 11 C 1.46504 * 119.99650 * 65.00182 * 10 7 6 12 12 H 1.08998 * 109.47762 * 24.99570 * 11 10 7 13 13 C 1.53003 * 109.47104 * 264.99605 * 11 10 7 14 14 C 1.50703 * 109.47054 * 145.00118 * 11 10 7 15 15 H 1.07997 * 119.99859 * 5.46556 * 14 11 10 16 16 C 1.37883 * 119.99879 * 185.46951 * 14 11 10 17 17 N 1.31514 * 119.99793 * 5.54672 * 16 14 11 18 18 Si 1.86798 * 120.00008 * 185.54830 * 16 14 11 19 19 H 1.48494 * 109.47131 * 94.99654 * 18 16 14 20 20 H 1.48494 * 109.47294 * 214.99906 * 18 16 14 21 21 H 1.48508 * 109.47101 * 334.99744 * 18 16 14 22 22 C 1.54516 * 110.50910 * 54.04902 * 5 4 2 23 23 C 1.54476 * 104.06055 * 118.64230 * 22 5 4 24 24 O 1.44427 * 104.80546 * 23.98148 * 23 22 5 25 25 C 1.44419 * 105.27221 * 319.48575 * 24 23 22 26 26 H 1.09005 * 109.46795 * 60.00402 * 1 2 3 27 27 H 1.08995 * 109.47414 * 300.00305 * 1 2 3 28 28 H 1.09000 * 109.47773 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46795 * 119.99598 * 2 1 3 30 30 H 1.09003 * 109.47092 * 53.95764 * 3 2 1 31 31 H 1.08998 * 109.46971 * 173.95814 * 3 2 1 32 32 H 1.08994 * 109.47074 * 293.95625 * 3 2 1 33 33 H 1.09001 * 109.46541 * 55.91129 * 6 5 4 34 34 H 1.08997 * 109.46717 * 175.90774 * 6 5 4 35 35 H 0.96991 * 120.00473 * 245.00119 * 10 7 6 36 36 H 1.09002 * 109.47332 * 65.01651 * 13 11 10 37 37 H 1.08997 * 109.47515 * 185.02163 * 13 11 10 38 38 H 1.09000 * 109.47043 * 305.02242 * 13 11 10 39 39 H 0.96998 * 119.99606 * 179.97438 * 17 16 14 40 40 H 1.08992 * 110.51071 * 237.28950 * 22 5 4 41 41 H 1.09005 * 110.51028 * 359.97438 * 22 5 4 42 42 H 1.09006 * 110.36932 * 142.81053 * 23 22 5 43 43 H 1.09004 * 110.37419 * 265.03511 * 23 22 5 44 44 H 1.09005 * 110.37396 * 281.68000 * 25 24 23 45 45 H 1.09001 * 110.37483 * 159.34635 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 3.1255 -1.5294 -0.9275 6 6 4.3652 -0.7036 -0.5783 7 16 4.8291 0.3218 -2.0009 8 8 5.3043 -0.4894 -3.0665 9 8 3.8548 1.3312 -2.2269 10 7 6.1675 1.1535 -1.4919 11 6 7.4037 0.4317 -1.1800 12 1 7.4243 -0.5085 -1.7309 13 6 7.4614 0.1443 0.3216 14 6 8.5899 1.2725 -1.5765 15 1 8.4418 2.2806 -1.9342 16 6 9.8643 0.7544 -1.4826 17 7 10.0388 -0.5065 -1.1520 18 14 11.3428 1.8435 -1.8249 19 1 11.8559 2.3978 -0.5463 20 1 12.4074 1.0416 -2.4794 21 1 10.9404 2.9572 -2.7211 22 6 2.8075 -2.5333 0.2033 23 6 2.9235 -3.9149 -0.4778 24 8 3.7964 -3.6973 -1.6077 25 6 3.3960 -2.4235 -2.1579 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 0.5138 0.8899 28 1 -0.3635 -1.0276 -0.0005 29 1 1.8932 -0.5138 0.8901 30 1 1.5910 1.9866 0.8310 31 1 3.1246 1.4443 0.1082 32 1 1.7677 1.9241 -0.9391 33 1 4.1459 -0.0625 0.2756 34 1 5.1888 -1.3724 -0.3285 35 1 6.1331 2.1185 -1.4002 36 1 6.6543 -0.5362 0.5927 37 1 8.4199 -0.3126 0.5676 38 1 7.3511 1.0772 0.8746 39 1 10.9352 -0.8710 -1.0863 40 1 3.5349 -2.4428 1.0099 41 1 1.7968 -2.3765 0.5801 42 1 3.3632 -4.6399 0.2073 43 1 1.9441 -4.2562 -0.8130 44 1 2.4893 -2.5351 -2.7526 45 1 4.1986 -2.0026 -2.7636 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595309668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:16 Heat of formation + Delta-G solvation = -160.979867 kcal Electronic energy + Delta-G solvation = -27865.327612 eV Core-core repulsion = 24010.582086 eV Total energy + Delta-G solvation = -3854.745526 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.41484 -37.78332 -36.56667 -35.52730 -35.39190 -33.42744 -32.20420 -31.56317 -30.15453 -28.41807 -27.49762 -26.59797 -25.21411 -23.30560 -21.75006 -21.03263 -20.10703 -18.84972 -17.73380 -17.52768 -16.68211 -16.05735 -15.86358 -15.49165 -15.28498 -15.20531 -14.78733 -14.70059 -14.33755 -13.66037 -13.40488 -13.21898 -13.04799 -12.70027 -12.60166 -12.45265 -12.28468 -12.22615 -11.92721 -11.82698 -11.72299 -11.49270 -11.33510 -11.22117 -11.15671 -10.98898 -10.88726 -10.67840 -10.59580 -10.50246 -10.32154 -10.08247 -9.81215 -9.74077 -9.25852 -8.61795 -8.33859 -6.15836 -4.20730 0.77883 3.23712 3.25464 3.32937 3.35386 3.43207 3.82183 4.10069 4.28854 4.35404 4.43545 4.52564 4.69252 4.85649 4.91154 4.94095 5.03527 5.09922 5.18003 5.25602 5.41362 5.46760 5.52002 5.56027 5.62237 5.68853 5.69381 5.78726 5.83072 5.91371 6.05104 6.26620 6.39652 6.56652 6.58982 6.66285 6.86058 7.08354 7.49504 7.52769 7.82589 7.92889 8.22044 8.81982 9.44554 10.92576 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018740 B = 0.004361 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.784003 B = 6419.687020 C = 7082.871304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.073 3.927 3 C -0.173 4.173 4 O -0.359 6.359 5 C 0.102 3.898 6 C -0.663 4.663 7 S 2.611 3.389 8 O -0.953 6.953 9 O -0.960 6.960 10 N -1.103 6.103 11 C 0.262 3.738 12 H 0.057 0.943 13 C -0.158 4.158 14 C -0.521 4.521 15 H 0.065 0.935 16 C 0.064 3.936 17 N -0.887 5.887 18 Si 0.900 3.100 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.175 4.175 23 C 0.043 3.957 24 O -0.354 6.354 25 C 0.018 3.982 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.149 0.851 35 H 0.408 0.592 36 H 0.014 0.986 37 H 0.083 0.917 38 H 0.037 0.963 39 H 0.265 0.735 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.904 -2.723 6.468 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.016 3.984 3 C -0.230 4.230 4 O -0.278 6.278 5 C 0.060 3.940 6 C -0.790 4.790 7 S 2.701 3.299 8 O -0.943 6.943 9 O -0.950 6.950 10 N -0.863 5.863 11 C 0.157 3.843 12 H 0.075 0.925 13 C -0.217 4.217 14 C -0.561 4.561 15 H 0.083 0.917 16 C -0.139 4.139 17 N -0.525 5.525 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.214 4.214 23 C -0.034 4.034 24 O -0.272 6.272 25 C -0.059 4.059 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.154 0.846 34 H 0.167 0.833 35 H 0.241 0.759 36 H 0.033 0.967 37 H 0.102 0.898 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.071 -3.131 5.380 18.170 hybrid contribution 0.979 0.829 1.183 1.745 sum -16.092 -2.302 6.563 17.531 Atomic orbital electron populations 1.21945 0.93821 1.02401 1.02800 1.22255 0.94796 0.93304 0.88071 1.22398 1.01316 0.95773 1.03542 1.88057 1.46237 1.59996 1.33559 1.22472 0.84714 0.89910 0.96912 1.31506 1.07314 1.16113 1.24038 1.04826 0.73561 0.75150 0.76341 1.93518 1.79679 1.71181 1.49922 1.93546 1.61335 1.55423 1.84734 1.55603 1.26243 1.18303 1.86131 1.18662 0.80491 0.93213 0.91896 0.92483 1.22342 1.01421 0.98896 0.99084 1.21179 0.90083 1.00183 1.44629 0.91707 1.24931 0.99018 0.95050 0.94882 1.69921 1.22615 1.12308 1.47647 0.86450 0.82026 0.80420 0.78365 1.20637 1.21049 1.19720 1.23625 1.03603 0.95355 0.98803 1.23401 0.95007 0.96441 0.88508 1.89251 1.56744 1.36263 1.44988 1.24204 1.04031 0.83561 0.94096 0.91425 0.91287 0.92286 0.91491 0.91975 0.92703 0.89907 0.84628 0.83251 0.75874 0.96720 0.89840 0.94383 0.92531 0.89297 0.89166 0.88594 0.91880 0.89995 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.56 37.16 0.36 -1.01 16 2 C 0.07 0.82 2.18 -26.73 -0.06 0.76 16 3 C -0.17 -2.09 8.09 37.16 0.30 -1.79 16 4 O -0.36 -4.97 9.04 -35.73 -0.32 -5.29 16 5 C 0.10 1.41 0.72 -89.05 -0.06 1.34 16 6 C -0.66 -9.88 3.73 37.16 0.14 -9.75 16 7 S 2.61 48.88 4.85 -107.50 -0.52 48.36 16 8 O -0.95 -21.17 14.62 -57.54 -0.84 -22.01 16 9 O -0.96 -18.41 15.16 -59.59 -0.90 -19.32 16 10 N -1.10 -22.16 5.35 -5.88 -0.03 -22.19 16 11 C 0.26 6.21 2.67 -69.08 -0.18 6.03 16 12 H 0.06 1.51 7.46 -51.93 -0.39 1.12 16 13 C -0.16 -3.36 9.33 37.16 0.35 -3.02 16 14 C -0.52 -13.74 8.69 -34.44 -0.30 -14.04 16 15 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 16 C 0.06 1.72 5.22 -17.82 -0.09 1.63 16 17 N -0.89 -24.42 11.97 55.43 0.66 -23.76 16 18 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 C -0.18 -1.89 5.44 -25.16 -0.14 -2.02 16 23 C 0.04 0.48 7.63 37.93 0.29 0.77 16 24 O -0.35 -5.41 11.65 -35.23 -0.41 -5.82 16 25 C 0.02 0.28 6.73 37.93 0.26 0.53 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.65 6.01 -51.93 -0.31 0.34 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.70 5.19 -51.93 -0.27 0.43 16 32 H 0.08 1.14 7.69 -51.93 -0.40 0.74 16 33 H 0.14 1.71 5.81 -51.92 -0.30 1.41 16 34 H 0.15 2.24 6.70 -51.93 -0.35 1.89 16 35 H 0.41 7.54 8.78 -34.47 -0.30 7.23 16 36 H 0.01 0.25 5.89 -51.93 -0.31 -0.05 16 37 H 0.08 1.98 6.64 -51.93 -0.34 1.64 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.09 0.89 7.73 -51.93 -0.40 0.49 16 41 H 0.09 0.80 6.67 -51.93 -0.35 0.45 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 45 H 0.13 2.36 4.49 -51.93 -0.23 2.13 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -31.57 353.76 -8.08 -39.65 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.88 Total: 9.95 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: 0.85 Total: -20.57 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.63 Total: -45.95 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -2.48 Total: -52.43 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 48.88 SS G_CDS: -0.52 Total: 48.36 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.57 -8.08 -39.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595309668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.325 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds