Wall clock time and date at job start Fri Apr 10 2020 14:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47231 * 2 1 4 4 O 1.42898 * 109.47166 * 239.99725 * 2 1 3 5 5 C 1.42905 * 113.99940 * 221.24503 * 4 2 1 6 6 C 1.53001 * 110.45944 * 291.44357 * 5 4 2 7 7 S 1.81394 * 109.46973 * 295.91135 * 6 5 4 8 8 O 1.42101 * 110.54444 * 291.61944 * 7 6 5 9 9 O 1.42099 * 110.54408 * 68.37621 * 7 6 5 10 10 N 1.65601 * 104.44796 * 179.97438 * 7 6 5 11 11 C 1.46504 * 119.99650 * 65.00182 * 10 7 6 12 12 H 1.08998 * 109.47762 * 24.99570 * 11 10 7 13 13 C 1.53003 * 109.47104 * 264.99605 * 11 10 7 14 14 C 1.50703 * 109.47054 * 145.00118 * 11 10 7 15 15 H 1.07997 * 119.99859 * 5.46556 * 14 11 10 16 16 C 1.37883 * 119.99879 * 185.46951 * 14 11 10 17 17 N 1.31514 * 119.99793 * 5.54672 * 16 14 11 18 18 Si 1.86798 * 120.00008 * 185.54830 * 16 14 11 19 19 H 1.48494 * 109.47131 * 94.99654 * 18 16 14 20 20 H 1.48494 * 109.47294 * 214.99906 * 18 16 14 21 21 H 1.48508 * 109.47101 * 334.99744 * 18 16 14 22 22 C 1.54516 * 110.50910 * 54.04902 * 5 4 2 23 23 C 1.54476 * 104.06055 * 118.64230 * 22 5 4 24 24 O 1.44427 * 104.80546 * 23.98148 * 23 22 5 25 25 C 1.44419 * 105.27221 * 319.48575 * 24 23 22 26 26 H 1.09005 * 109.46795 * 60.00402 * 1 2 3 27 27 H 1.08995 * 109.47414 * 300.00305 * 1 2 3 28 28 H 1.09000 * 109.47773 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46795 * 119.99598 * 2 1 3 30 30 H 1.09003 * 109.47092 * 53.95764 * 3 2 1 31 31 H 1.08998 * 109.46971 * 173.95814 * 3 2 1 32 32 H 1.08994 * 109.47074 * 293.95625 * 3 2 1 33 33 H 1.09001 * 109.46541 * 55.91129 * 6 5 4 34 34 H 1.08997 * 109.46717 * 175.90774 * 6 5 4 35 35 H 0.96991 * 120.00473 * 245.00119 * 10 7 6 36 36 H 1.09002 * 109.47332 * 65.01651 * 13 11 10 37 37 H 1.08997 * 109.47515 * 185.02163 * 13 11 10 38 38 H 1.09000 * 109.47043 * 305.02242 * 13 11 10 39 39 H 0.96998 * 119.99606 * 179.97438 * 17 16 14 40 40 H 1.08992 * 110.51071 * 237.28950 * 22 5 4 41 41 H 1.09005 * 110.51028 * 359.97438 * 22 5 4 42 42 H 1.09006 * 110.36932 * 142.81053 * 23 22 5 43 43 H 1.09004 * 110.37419 * 265.03511 * 23 22 5 44 44 H 1.09005 * 110.37396 * 281.68000 * 25 24 23 45 45 H 1.09001 * 110.37483 * 159.34635 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 3.1255 -1.5294 -0.9275 6 6 4.3652 -0.7036 -0.5783 7 16 4.8291 0.3218 -2.0009 8 8 5.3043 -0.4894 -3.0665 9 8 3.8548 1.3312 -2.2269 10 7 6.1675 1.1535 -1.4919 11 6 7.4037 0.4317 -1.1800 12 1 7.4243 -0.5085 -1.7309 13 6 7.4614 0.1443 0.3216 14 6 8.5899 1.2725 -1.5765 15 1 8.4418 2.2806 -1.9342 16 6 9.8643 0.7544 -1.4826 17 7 10.0388 -0.5065 -1.1520 18 14 11.3428 1.8435 -1.8249 19 1 11.8559 2.3978 -0.5463 20 1 12.4074 1.0416 -2.4794 21 1 10.9404 2.9572 -2.7211 22 6 2.8075 -2.5333 0.2033 23 6 2.9235 -3.9149 -0.4778 24 8 3.7964 -3.6973 -1.6077 25 6 3.3960 -2.4235 -2.1579 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 0.5138 0.8899 28 1 -0.3635 -1.0276 -0.0005 29 1 1.8932 -0.5138 0.8901 30 1 1.5910 1.9866 0.8310 31 1 3.1246 1.4443 0.1082 32 1 1.7677 1.9241 -0.9391 33 1 4.1459 -0.0625 0.2756 34 1 5.1888 -1.3724 -0.3285 35 1 6.1331 2.1185 -1.4002 36 1 6.6543 -0.5362 0.5927 37 1 8.4199 -0.3126 0.5676 38 1 7.3511 1.0772 0.8746 39 1 10.9352 -0.8710 -1.0863 40 1 3.5349 -2.4428 1.0099 41 1 1.7968 -2.3765 0.5801 42 1 3.3632 -4.6399 0.2073 43 1 1.9441 -4.2562 -0.8130 44 1 2.4893 -2.5351 -2.7526 45 1 4.1986 -2.0026 -2.7636 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595309668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:15 Heat of formation + Delta-G solvation = -185.373795 kcal Electronic energy + Delta-G solvation = -27866.385412 eV Core-core repulsion = 24010.582086 eV Total energy + Delta-G solvation = -3855.803326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.42677 -38.80575 -38.11710 -37.29313 -36.97861 -34.37704 -34.14334 -32.56887 -31.13725 -30.15951 -28.42325 -27.70015 -27.11509 -24.20440 -22.89270 -22.68567 -21.08063 -20.36711 -19.21405 -18.72568 -18.22050 -17.37304 -17.22411 -17.05704 -16.57328 -16.38420 -16.23554 -15.62572 -15.48984 -15.28133 -14.60462 -14.34789 -14.14541 -14.05195 -13.97606 -13.78950 -13.50694 -13.44554 -13.14287 -13.11715 -13.01856 -12.86800 -12.77216 -12.71183 -12.44771 -12.44231 -12.28533 -12.18133 -11.98988 -11.80512 -11.57920 -11.46546 -11.14331 -10.84565 -10.78287 -10.57489 -10.07836 -8.18117 -6.29478 -0.69337 1.43128 1.45010 1.54891 1.87007 2.30255 2.43343 2.74425 2.84295 3.12737 3.15401 3.18632 3.43464 3.63821 3.89346 4.06555 4.11604 4.14314 4.21276 4.28330 4.32729 4.46171 4.51249 4.62569 4.73269 4.78884 4.81418 4.83534 4.85518 4.93464 4.94645 4.96712 5.00464 5.08232 5.34704 5.45450 5.56633 5.61629 5.72411 5.92823 6.12513 6.15601 6.39264 6.80614 7.39286 8.89818 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018740 B = 0.004361 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.784003 B = 6419.687020 C = 7082.871304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 C -0.179 4.179 4 O -0.375 6.375 5 C 0.099 3.901 6 C -0.641 4.641 7 S 2.608 3.392 8 O -0.999 6.999 9 O -0.969 6.969 10 N -1.106 6.106 11 C 0.265 3.735 12 H 0.021 0.979 13 C -0.149 4.149 14 C -0.544 4.544 15 H 0.062 0.938 16 C 0.018 3.982 17 N -0.914 5.914 18 Si 0.960 3.040 19 H -0.269 1.269 20 H -0.285 1.285 21 H -0.271 1.271 22 C -0.167 4.167 23 C 0.035 3.965 24 O -0.381 6.381 25 C 0.010 3.990 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.166 0.834 34 H 0.152 0.848 35 H 0.413 0.587 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.266 0.734 40 H 0.102 0.898 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.450 -2.794 8.992 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.006 3.994 3 C -0.236 4.236 4 O -0.295 6.295 5 C 0.057 3.943 6 C -0.772 4.772 7 S 2.703 3.297 8 O -0.989 6.989 9 O -0.959 6.959 10 N -0.865 5.865 11 C 0.159 3.841 12 H 0.039 0.961 13 C -0.208 4.208 14 C -0.583 4.583 15 H 0.080 0.920 16 C -0.183 4.183 17 N -0.553 5.553 18 Si 0.785 3.215 19 H -0.194 1.194 20 H -0.211 1.211 21 H -0.196 1.196 22 C -0.205 4.205 23 C -0.041 4.041 24 O -0.300 6.300 25 C -0.068 4.068 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.184 0.816 34 H 0.170 0.830 35 H 0.248 0.752 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.120 0.880 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.611 -3.153 7.870 20.452 hybrid contribution 1.339 0.821 0.388 1.618 sum -17.272 -2.332 8.258 19.286 Atomic orbital electron populations 1.21959 0.92042 1.03336 1.03342 1.22572 0.96268 0.92542 0.88059 1.22460 1.00887 0.96881 1.03375 1.88072 1.45843 1.60256 1.35362 1.22474 0.84159 0.90155 0.97491 1.31284 1.08318 1.15673 1.21916 1.04691 0.72942 0.75003 0.77023 1.93476 1.80365 1.71817 1.53219 1.93535 1.60806 1.56133 1.85467 1.55432 1.25942 1.18730 1.86410 1.18391 0.81081 0.91565 0.93027 0.96136 1.22170 1.01273 1.00216 0.97171 1.21575 0.91520 1.00477 1.44732 0.91988 1.25681 1.01575 0.96198 0.94802 1.70028 1.23159 1.13605 1.48466 0.85520 0.78760 0.78700 0.78528 1.19427 1.21056 1.19605 1.23647 1.05594 0.93612 0.97663 1.23734 0.95528 0.97230 0.87639 1.89220 1.58202 1.35987 1.46607 1.24128 1.03264 0.84345 0.95035 0.92704 0.88980 0.91163 0.89067 0.89227 0.93767 0.92422 0.81645 0.83032 0.75244 0.93404 0.92434 0.92896 0.92459 0.87951 0.86450 0.86587 0.90059 0.88988 0.87940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.56 71.98 0.69 -1.49 16 2 C 0.06 1.19 2.18 30.59 0.07 1.26 16 3 C -0.18 -3.92 8.09 71.98 0.58 -3.34 16 4 O -0.38 -9.66 9.04 -148.51 -1.34 -11.00 16 5 C 0.10 2.55 0.72 -9.78 -0.01 2.55 16 6 C -0.64 -18.11 3.73 71.98 0.27 -17.84 16 7 S 2.61 99.47 4.85 -56.49 -0.27 99.20 16 8 O -1.00 -46.80 14.62 -127.65 -1.87 -48.67 16 9 O -0.97 -37.72 15.16 -125.69 -1.91 -39.63 16 10 N -1.11 -45.13 5.35 -172.51 -0.92 -46.05 16 11 C 0.26 12.80 2.67 44.25 0.12 12.92 16 12 H 0.02 1.15 7.46 -2.39 -0.02 1.13 16 13 C -0.15 -6.24 9.33 71.98 0.67 -5.57 16 14 C -0.54 -29.16 8.69 25.60 0.22 -28.94 16 15 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 16 C 0.02 0.97 5.22 84.66 0.44 1.41 16 17 N -0.91 -51.22 11.97 21.45 0.26 -50.97 16 18 Si 0.96 42.65 29.54 68.60 2.03 44.68 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 C -0.17 -2.94 5.44 31.61 0.17 -2.76 16 23 C 0.03 0.66 7.63 72.48 0.55 1.21 16 24 O -0.38 -11.33 11.65 -148.98 -1.74 -13.07 16 25 C 0.01 0.29 6.73 72.48 0.49 0.78 16 26 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 1.32 6.01 -2.38 -0.01 1.31 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.04 1.03 5.19 -2.39 -0.01 1.02 16 32 H 0.06 1.55 7.69 -2.39 -0.02 1.53 16 33 H 0.17 3.67 5.81 -2.39 -0.01 3.65 16 34 H 0.15 4.32 6.70 -2.39 -0.02 4.30 16 35 H 0.41 15.49 8.78 -96.75 -0.85 14.64 16 36 H 0.05 1.63 5.89 -2.39 -0.01 1.61 16 37 H 0.06 2.73 6.64 -2.39 -0.02 2.71 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 40 H 0.10 1.56 7.73 -2.39 -0.02 1.54 16 41 H 0.12 1.46 6.67 -2.38 -0.02 1.44 16 42 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.08 1.24 8.14 -2.38 -0.02 1.23 16 44 H 0.09 2.52 8.08 -2.38 -0.02 2.50 16 45 H 0.10 3.82 4.49 -2.39 -0.01 3.81 16 Total: -1.00 -70.92 353.76 -1.34 -72.27 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.15 Total: 33.05 kcal Atomic # 6 Polarization: -44.08 SS G_CDS: 4.27 Total: -39.81 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -0.67 Total: -97.02 kcal Atomic # 8 Polarization: -105.52 SS G_CDS: -6.85 Total: -112.37 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 99.47 SS G_CDS: -0.27 Total: 99.20 kcal Total: -70.92 -1.34 -72.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595309668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.108 kcal (2) G-P(sol) polarization free energy of solvation -70.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds