Wall clock time and date at job start Fri Apr 10 2020 14:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47070 * 2 1 4 4 C 1.42895 * 114.00122 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47384 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.51079 * 305.10491 * 5 4 3 7 7 C 1.53291 * 109.51664 * 185.00102 * 5 4 3 8 8 N 1.47147 * 108.38820 * 187.72468 * 7 5 4 9 9 S 1.65600 * 120.98386 * 230.51377 * 8 7 5 10 10 O 1.42098 * 104.27576 * 333.92752 * 9 8 7 11 11 O 1.42102 * 104.27841 * 206.06879 * 9 8 7 12 12 C 1.81400 * 104.45288 * 89.99890 * 9 8 7 13 13 C 1.52992 * 109.47583 * 180.02562 * 12 9 8 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 9 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 C 1.47149 * 118.03722 * 50.78532 * 8 7 5 24 24 C 1.53716 * 108.15924 * 309.16026 * 23 8 7 25 25 O 1.42960 * 109.14781 * 52.53711 * 24 23 8 26 26 H 1.09002 * 109.47393 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47640 * 300.00489 * 1 2 3 28 28 H 1.09001 * 109.47110 * 60.00323 * 1 2 3 29 29 H 1.08997 * 109.47640 * 239.99511 * 2 1 3 30 30 H 1.09000 * 109.46790 * 119.99240 * 2 1 3 31 31 H 1.09008 * 109.46933 * 59.99414 * 4 3 2 32 32 H 1.08999 * 109.47347 * 299.99820 * 4 3 2 33 33 H 1.09001 * 109.68188 * 67.99891 * 7 5 4 34 34 H 1.09001 * 109.71455 * 307.46879 * 7 5 4 35 35 H 1.09002 * 109.47172 * 59.99879 * 12 9 8 36 36 H 1.09001 * 109.46713 * 300.00132 * 12 9 8 37 37 H 1.09002 * 109.47103 * 59.99669 * 13 12 9 38 38 H 1.08998 * 109.46862 * 300.00481 * 13 12 9 39 39 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 40 40 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 41 41 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.68036 * 68.93328 * 23 8 7 43 43 H 1.09000 * 109.68659 * 189.49521 * 23 8 7 44 44 H 1.09000 * 109.65691 * 292.56839 * 24 23 8 45 45 H 1.09006 * 109.48254 * 172.39454 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9384 -0.0001 6 1 3.3487 3.4420 -0.8412 7 6 5.3481 3.0620 -0.1254 8 7 5.7163 4.4741 0.0630 9 16 6.6971 5.2514 -1.0215 10 8 7.4696 4.2107 -1.6039 11 8 7.3118 6.2828 -0.2615 12 6 5.5543 5.9551 -2.2419 13 6 6.3493 6.7074 -3.3108 14 6 5.3855 7.3004 -4.3405 15 6 6.1687 8.0419 -5.3930 16 1 7.2461 8.0856 -5.3337 17 6 5.5097 8.6638 -6.4323 18 7 6.1932 9.3105 -7.3511 19 14 3.6461 8.5877 -6.5352 20 1 3.0624 9.7407 -5.8036 21 1 3.2264 8.6411 -7.9587 22 1 3.1679 7.3210 -5.9253 23 6 5.1922 5.1735 1.2469 24 6 3.6726 4.9486 1.3025 25 8 3.4028 3.5470 1.2225 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 3.8340 0.9764 -0.8892 32 1 3.8332 0.9768 0.8908 33 1 5.6633 2.7292 -1.1144 34 1 5.8306 2.4517 0.6381 35 1 4.8709 6.6437 -1.7450 36 1 4.9844 5.1529 -2.7109 37 1 7.0324 6.0185 -3.8077 38 1 6.9195 7.5095 -2.8422 39 1 4.7020 7.9892 -3.8440 40 1 4.8157 6.4979 -4.8091 41 1 5.7296 9.7483 -8.0820 42 1 5.6586 4.7723 2.1466 43 1 5.4040 6.2397 1.1671 44 1 3.1955 5.4595 0.4662 45 1 3.2810 5.3418 2.2407 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599450019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:33 Heat of formation + Delta-G solvation = -169.427527 kcal Electronic energy + Delta-G solvation = -25901.253807 eV Core-core repulsion = 22046.141963 eV Total energy + Delta-G solvation = -3855.111844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.83181 -38.06927 -37.13333 -35.93696 -35.05252 -34.84553 -33.02289 -32.24904 -31.16258 -28.43625 -28.23507 -25.80610 -23.75656 -23.24158 -23.11211 -21.33047 -20.41532 -19.06042 -17.87838 -17.30573 -17.07434 -16.96896 -16.27937 -16.11727 -15.91458 -15.60703 -15.26199 -15.08878 -14.38064 -14.35497 -14.16026 -13.79219 -13.57458 -12.97879 -12.96470 -12.66644 -12.41359 -12.25292 -12.22945 -12.11446 -12.00854 -11.85788 -11.76741 -11.68941 -11.65198 -11.34182 -11.06747 -10.98073 -10.77502 -10.59960 -10.12942 -9.94708 -9.89806 -9.66061 -9.30812 -9.03782 -8.61366 -6.11007 -4.10550 0.22943 2.47101 3.21144 3.24685 3.32575 3.34315 3.37807 3.84821 4.09908 4.30428 4.37989 4.45471 4.58153 4.68205 4.73018 4.82050 4.90356 4.90852 4.96073 4.97771 5.02394 5.03978 5.09157 5.19320 5.22605 5.27131 5.35781 5.49736 5.56651 5.62385 5.69154 5.74828 5.78363 6.05159 6.19076 6.20702 6.61924 6.79673 6.88795 7.08498 7.22484 7.67988 8.44669 8.93193 9.49995 11.02257 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011524 B = 0.003400 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.140909 B = 8233.887493 C = 9810.110943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.071 3.929 5 C 0.077 3.923 6 H 0.075 0.925 7 C 0.097 3.903 8 N -1.007 6.007 9 S 2.599 3.401 10 O -0.954 6.954 11 O -0.953 6.953 12 C -0.615 4.615 13 C -0.097 4.097 14 C -0.004 4.004 15 C -0.528 4.528 16 H 0.075 0.925 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.266 1.266 23 C 0.086 3.914 24 C 0.046 3.954 25 O -0.365 6.365 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.016 0.984 40 H 0.020 0.980 41 H 0.264 0.736 42 H 0.080 0.920 43 H 0.102 0.898 44 H 0.059 0.941 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.111 -17.502 19.293 27.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.006 4.006 5 C 0.018 3.982 6 H 0.093 0.907 7 C -0.030 4.030 8 N -0.844 5.844 9 S 2.697 3.303 10 O -0.945 6.945 11 O -0.943 6.943 12 C -0.747 4.747 13 C -0.137 4.137 14 C -0.043 4.043 15 C -0.566 4.566 16 H 0.093 0.907 17 C -0.134 4.134 18 N -0.538 5.538 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.191 1.191 23 C -0.039 4.039 24 C -0.032 4.032 25 O -0.284 6.284 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.034 0.966 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.120 0.880 44 H 0.077 0.923 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.371 -17.316 19.356 27.287 hybrid contribution -1.356 0.105 -0.610 1.491 sum -9.727 -17.211 18.746 27.244 Atomic orbital electron populations 1.21737 0.93674 1.02189 1.03284 1.22473 0.95741 0.83709 1.00059 1.87947 1.20235 1.26364 1.95425 1.22415 0.82359 0.94484 1.01384 1.22466 0.93457 0.93449 0.88859 0.90710 1.21928 0.94639 0.82136 1.04247 1.58039 1.69258 1.19701 1.37353 1.05504 0.75584 0.74339 0.74915 1.93572 1.66556 1.55623 1.78717 1.93577 1.73214 1.58953 1.68598 1.30666 1.16215 1.12336 1.15472 1.21320 0.98599 0.98879 0.94862 1.19527 0.94937 0.95939 0.93850 1.21124 0.95440 1.32691 1.07327 0.90721 1.25025 0.98361 0.94661 0.95339 1.69910 1.35834 1.34747 1.13326 0.86778 0.86163 0.78995 0.77334 1.20194 1.21221 1.19075 1.22214 0.94867 0.98352 0.88503 1.23098 0.94248 0.82610 1.03243 1.88002 1.81597 1.21719 1.37048 0.91135 0.91785 0.91791 0.93341 0.93371 0.91289 0.92087 0.87909 0.89965 0.85419 0.85465 0.90948 0.90958 0.96612 0.96179 0.92590 0.90126 0.88002 0.92282 0.87503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.06 0.42 6.66 37.16 0.25 0.66 16 3 O -0.38 -3.87 10.31 -39.66 -0.41 -4.28 16 4 C 0.07 0.59 5.61 37.16 0.21 0.80 16 5 C 0.08 0.73 3.06 -26.58 -0.08 0.65 16 6 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 7 C 0.10 0.91 5.79 -3.54 -0.02 0.89 16 8 N -1.01 -10.93 3.27 -112.83 -0.37 -11.30 16 9 S 2.60 36.36 5.42 -107.50 -0.58 35.78 16 10 O -0.95 -15.80 16.81 -57.54 -0.97 -16.76 16 11 O -0.95 -15.84 16.80 -57.54 -0.97 -16.81 16 12 C -0.62 -8.65 6.18 37.15 0.23 -8.42 16 13 C -0.10 -1.86 5.16 -26.74 -0.14 -2.00 16 14 C 0.00 -0.09 4.04 -27.88 -0.11 -0.20 16 15 C -0.53 -14.93 9.66 -34.44 -0.33 -15.26 16 16 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 19 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 23 C 0.09 0.79 6.53 -3.32 -0.02 0.77 16 24 C 0.05 0.39 7.00 37.53 0.26 0.65 16 25 O -0.37 -3.84 10.35 -39.66 -0.41 -4.25 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.10 0.90 7.23 -51.93 -0.38 0.52 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.13 1.54 8.14 -51.92 -0.42 1.12 16 36 H 0.13 1.55 8.14 -51.92 -0.42 1.13 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 40 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.10 0.88 7.22 -51.93 -0.37 0.51 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -36.24 376.36 -9.27 -45.51 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -7.87 Total: -3.20 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 0.53 Total: -20.21 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.41 Total: -38.10 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -2.75 Total: -42.10 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Atomic # 16 Polarization: 36.36 SS G_CDS: -0.58 Total: 35.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.24 -9.27 -45.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599450019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.916 kcal (2) G-P(sol) polarization free energy of solvation -36.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds