Wall clock time and date at job start Fri Apr 10 2020 14:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46948 * 2 1 4 4 C 1.46499 * 119.99921 * 275.00171 * 3 2 1 5 5 C 1.53002 * 109.46832 * 288.76275 * 4 3 2 6 6 O 1.42903 * 109.47033 * 304.45813 * 5 4 3 7 7 C 1.42905 * 113.99992 * 200.15850 * 6 5 4 8 8 O 1.42901 * 109.47503 * 64.46178 * 5 4 3 9 9 C 1.42903 * 114.00096 * 166.17354 * 8 5 4 10 10 S 1.65599 * 120.00177 * 94.99802 * 3 2 1 11 11 O 1.42098 * 104.27494 * 331.25157 * 10 3 2 12 12 O 1.42093 * 104.27699 * 203.39107 * 10 3 2 13 13 C 1.81401 * 104.44790 * 87.31989 * 10 3 2 14 14 C 1.52996 * 109.47353 * 186.53525 * 13 10 3 15 15 C 1.50697 * 115.54784 * 295.12260 * 14 13 10 16 16 H 1.08006 * 119.99984 * 114.25260 * 15 14 13 17 17 C 1.37877 * 119.99913 * 293.97220 * 15 14 13 18 18 N 1.31519 * 119.99732 * 173.14634 * 17 15 14 19 19 Si 1.86798 * 120.00100 * 353.14685 * 17 15 14 20 20 H 1.48499 * 109.46850 * 93.99673 * 19 17 15 21 21 H 1.48503 * 109.47158 * 213.99695 * 19 17 15 22 22 H 1.48502 * 109.47052 * 333.99754 * 19 17 15 23 23 C 1.53007 * 117.49894 * 80.78999 * 14 13 10 24 24 C 1.52999 * 117.50227 * 149.44743 * 14 13 10 25 25 H 1.08999 * 109.47222 * 299.99736 * 1 2 3 26 26 H 1.08997 * 109.47399 * 60.00272 * 1 2 3 27 27 H 1.09007 * 109.47022 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47222 * 240.00264 * 2 1 3 29 29 H 1.09005 * 109.47084 * 119.99683 * 2 1 3 30 30 H 1.08997 * 109.47465 * 48.76014 * 4 3 2 31 31 H 1.08998 * 109.47662 * 168.76241 * 4 3 2 32 32 H 1.09005 * 109.47326 * 184.46511 * 5 4 3 33 33 H 1.08995 * 109.47348 * 303.56248 * 7 6 5 34 34 H 1.09003 * 109.46852 * 63.55804 * 7 6 5 35 35 H 1.08998 * 109.46788 * 183.55902 * 7 6 5 36 36 H 1.08999 * 109.46438 * 199.31319 * 9 8 5 37 37 H 1.09003 * 109.46508 * 319.30621 * 9 8 5 38 38 H 1.08993 * 109.47593 * 79.30658 * 9 8 5 39 39 H 1.09003 * 109.47070 * 66.53450 * 13 10 3 40 40 H 1.09001 * 109.47323 * 306.53608 * 13 10 3 41 41 H 0.97004 * 119.99359 * 179.97438 * 18 17 15 42 42 H 1.08995 * 117.49598 * 215.00791 * 23 14 13 43 43 H 1.08998 * 117.49761 * 0.02562 * 23 14 13 44 44 H 1.09003 * 117.49840 * 359.97438 * 24 14 13 45 45 H 1.08997 * 117.50005 * 144.97637 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.3367 1.5363 -2.0540 6 8 4.5165 1.5807 -1.2488 7 6 5.7328 1.5095 -1.9956 8 8 3.0562 0.1820 -2.4138 9 6 3.9351 -0.3493 -3.4075 10 16 2.4121 2.1203 1.4287 11 8 1.5744 1.4932 2.3900 12 8 2.2948 3.5085 1.1490 13 6 4.1475 1.6714 1.7072 14 6 4.5863 2.1632 3.0878 15 6 4.6015 3.6591 3.2703 16 1 3.9174 4.1255 3.9637 17 6 5.4928 4.4316 2.5562 18 7 5.4177 5.7434 2.6121 19 14 6.8069 3.6150 1.5095 20 1 6.3168 3.4830 0.1139 21 1 8.0386 4.4444 1.5253 22 1 7.1100 2.2683 2.0572 23 6 4.2030 1.3079 4.2972 24 6 5.6567 1.3513 3.8198 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.2437 2.0024 -1.8474 31 1 2.3371 3.1640 -1.0580 32 1 3.4905 2.1277 -2.9567 33 1 5.7329 0.6056 -2.6046 34 1 5.8138 2.3833 -2.6422 35 1 6.5794 1.4855 -1.3094 36 1 3.4741 -1.2215 -3.8711 37 1 4.1245 0.4087 -4.1676 38 1 4.8766 -0.6402 -2.9419 39 1 4.7700 2.1347 0.9416 40 1 4.2552 0.5879 1.6563 41 1 6.0450 6.2869 2.1100 42 1 3.9620 1.8271 5.2247 43 1 3.6387 0.3946 4.1091 44 1 6.0481 0.4664 3.3179 45 1 6.3723 1.8991 4.4330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885387904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:07 Heat of formation + Delta-G solvation = -122.653236 kcal Electronic energy + Delta-G solvation = -28505.269712 eV Core-core repulsion = 24652.186154 eV Total energy + Delta-G solvation = -3853.083558 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.48264 -36.97657 -36.36425 -36.13766 -36.00283 -34.94403 -32.11063 -31.19989 -28.75655 -28.30552 -26.57261 -26.08809 -25.37124 -23.09077 -21.83277 -21.53785 -19.27647 -18.34900 -17.56605 -17.51335 -16.70825 -16.56267 -16.02791 -15.62042 -15.10088 -14.92999 -14.51814 -14.17349 -13.96823 -13.80180 -13.65571 -13.44185 -13.00671 -12.92133 -12.56282 -12.44434 -12.33034 -12.12245 -12.08526 -11.62026 -11.48618 -11.24328 -11.17372 -11.04869 -10.85896 -10.68462 -10.61643 -10.52530 -10.38035 -10.09403 -9.92261 -9.86331 -9.50044 -9.04555 -8.78513 -8.61279 -8.25946 -6.09140 -4.14233 1.12338 3.25996 3.28862 3.34596 3.44452 3.49719 3.71368 4.43062 4.62225 4.64980 4.84146 4.90917 4.92066 4.99728 5.02133 5.11085 5.19498 5.24038 5.25971 5.40882 5.47511 5.53877 5.58868 5.67092 5.71417 5.78066 5.87999 5.91665 6.09086 6.14179 6.18410 6.39281 6.46988 6.52242 6.56006 6.75507 6.84333 6.93104 6.99956 7.08048 7.16817 7.69315 8.47046 8.95100 9.53217 11.02236 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013017 B = 0.007277 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.592127 B = 3846.983846 C = 4866.782093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.120 3.880 3 N -0.996 5.996 4 C 0.135 3.865 5 C 0.222 3.778 6 O -0.383 6.383 7 C 0.012 3.988 8 O -0.384 6.384 9 C 0.019 3.981 10 S 2.615 3.385 11 O -0.967 6.967 12 O -0.939 6.939 13 C -0.568 4.568 14 C 0.001 3.999 15 C -0.509 4.509 16 H 0.084 0.916 17 C 0.093 3.907 18 N -0.880 5.880 19 Si 0.854 3.146 20 H -0.267 1.267 21 H -0.292 1.292 22 H -0.246 1.246 23 C -0.181 4.181 24 C -0.178 4.178 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.042 0.958 38 H 0.050 0.950 39 H 0.130 0.870 40 H 0.103 0.897 41 H 0.265 0.735 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.574 -12.954 -14.013 19.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.005 4.005 3 N -0.831 5.831 4 C 0.008 3.992 5 C 0.125 3.875 6 O -0.303 6.303 7 C -0.084 4.084 8 O -0.304 6.304 9 C -0.077 4.077 10 S 2.711 3.289 11 O -0.957 6.957 12 O -0.929 6.929 13 C -0.699 4.699 14 C -0.001 4.001 15 C -0.545 4.545 16 H 0.102 0.898 17 C -0.112 4.112 18 N -0.515 5.515 19 Si 0.680 3.320 20 H -0.192 1.192 21 H -0.219 1.219 22 H -0.170 1.170 23 C -0.219 4.219 24 C -0.217 4.217 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.137 0.863 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.148 0.852 40 H 0.122 0.878 41 H 0.075 0.925 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.281 -12.319 -13.303 18.425 hybrid contribution 1.876 -0.603 -1.399 2.417 sum -1.406 -12.922 -14.703 19.625 Atomic orbital electron populations 1.22188 0.96571 1.01674 1.02447 1.21281 0.94020 0.81833 1.03406 1.57782 1.80084 1.23609 1.21628 1.21416 0.95301 0.97274 0.85237 1.24180 0.87167 0.83164 0.92954 1.88114 1.13921 1.93171 1.35053 1.23193 0.87552 1.00181 0.97479 1.88057 1.54594 1.29677 1.58088 1.23045 0.94734 0.99023 0.90917 1.05005 0.77498 0.74100 0.72250 1.93487 1.64585 1.77842 1.59813 1.93555 1.86362 1.30255 1.82779 1.30209 1.24182 1.08288 1.07235 1.18897 1.01126 0.94559 0.85558 1.20346 1.21461 0.86027 1.26700 0.89825 1.24880 0.96731 0.94379 0.95219 1.69912 1.36247 1.04212 1.41082 0.87179 0.81753 0.81275 0.81747 1.19239 1.21878 1.16957 1.22971 0.97976 1.01231 0.99688 1.23033 0.91837 1.01596 1.05225 0.91773 0.92772 0.92151 0.88829 0.91043 0.88707 0.86307 0.91867 0.92985 0.93744 0.89455 0.89974 0.93980 0.93152 0.85161 0.87805 0.92480 0.89030 0.90143 0.91163 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.12 1.67 5.85 -4.04 -0.02 1.65 16 3 N -1.00 -16.44 2.55 -114.38 -0.29 -16.73 16 4 C 0.13 1.90 6.00 -4.04 -0.02 1.88 16 5 C 0.22 2.84 3.17 37.16 0.12 2.95 16 6 O -0.38 -5.91 8.16 -59.04 -0.48 -6.39 16 7 C 0.01 0.15 10.65 101.05 1.08 1.22 16 8 O -0.38 -4.42 7.95 -59.04 -0.47 -4.89 16 9 C 0.02 0.16 9.72 101.05 0.98 1.14 16 10 S 2.61 56.53 5.08 -107.50 -0.55 55.98 16 11 O -0.97 -22.01 16.75 -57.54 -0.96 -22.98 16 12 O -0.94 -23.77 16.10 -57.54 -0.93 -24.70 16 13 C -0.57 -12.23 5.16 37.16 0.19 -12.04 16 14 C 0.00 0.03 0.80 -155.66 -0.12 -0.09 16 15 C -0.51 -14.62 8.73 -34.44 -0.30 -14.93 16 16 H 0.08 2.64 8.06 -52.48 -0.42 2.22 16 17 C 0.09 2.71 5.47 -17.82 -0.10 2.61 16 18 N -0.88 -27.16 13.96 55.43 0.77 -26.38 16 19 Si 0.85 20.88 25.06 -169.99 -4.26 16.62 16 20 H -0.27 -6.13 7.04 56.52 0.40 -5.73 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.25 -5.64 5.63 56.52 0.32 -5.32 16 23 C -0.18 -3.91 9.96 -26.69 -0.27 -4.18 16 24 C -0.18 -3.82 7.89 -26.70 -0.21 -4.03 16 25 H 0.06 0.95 7.80 -51.93 -0.41 0.55 16 26 H 0.05 0.62 8.11 -51.93 -0.42 0.20 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.17 5.48 -51.93 -0.28 0.89 16 29 H 0.07 1.00 7.69 -51.93 -0.40 0.61 16 30 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 31 H 0.12 1.85 6.67 -51.93 -0.35 1.50 16 32 H 0.06 0.65 7.61 -51.93 -0.40 0.26 16 33 H 0.05 0.50 4.42 -51.93 -0.23 0.27 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.04 0.30 7.75 -51.93 -0.40 -0.11 16 38 H 0.05 0.42 5.99 -51.93 -0.31 0.11 16 39 H 0.13 2.88 3.56 -51.92 -0.18 2.70 16 40 H 0.10 1.90 8.09 -51.92 -0.42 1.48 16 41 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 42 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 43 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -35.33 361.79 -7.26 -42.59 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.25 Total: 7.02 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 1.70 Total: -25.59 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.48 Total: -43.12 kcal Atomic # 8 Polarization: -56.12 SS G_CDS: -2.84 Total: -58.96 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.26 Total: 16.62 kcal Atomic # 16 Polarization: 56.53 SS G_CDS: -0.55 Total: 55.98 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.33 -7.26 -42.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885387904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.064 kcal (2) G-P(sol) polarization free energy of solvation -35.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds