Wall clock time and date at job start Fri Apr 10 2020 14:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.47274 * 2 1 4 4 C 1.42895 * 114.00109 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47066 * 179.97438 * 4 3 2 6 6 O 1.42896 * 109.47278 * 64.99986 * 5 4 3 7 7 C 1.42901 * 114.00188 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47257 * 179.97438 * 7 6 5 9 9 N 1.46497 * 109.47167 * 64.99621 * 8 7 6 10 10 S 1.65602 * 119.99699 * 165.27707 * 9 8 7 11 11 O 1.42108 * 104.27382 * 180.79762 * 10 9 8 12 12 O 1.42093 * 104.27799 * 308.65309 * 10 9 8 13 13 C 1.81394 * 104.45036 * 64.72636 * 10 9 8 14 14 C 1.52998 * 109.47299 * 173.87111 * 13 10 9 15 15 C 1.50699 * 115.54907 * 65.26885 * 14 13 10 16 16 H 1.07999 * 120.00357 * 268.54409 * 15 14 13 17 17 C 1.37880 * 119.99986 * 88.55068 * 15 14 13 18 18 N 1.31511 * 120.00224 * 174.70141 * 17 15 14 19 19 Si 1.86801 * 120.00053 * 354.69864 * 17 15 14 20 20 H 1.48499 * 109.47053 * 92.55135 * 19 17 15 21 21 H 1.48496 * 109.47263 * 212.55623 * 19 17 15 22 22 H 1.48498 * 109.46965 * 332.55652 * 19 17 15 23 23 C 1.53004 * 117.50138 * 279.60087 * 14 13 10 24 24 C 1.53000 * 117.50175 * 210.93986 * 14 13 10 25 25 H 1.09001 * 109.47202 * 60.00055 * 1 2 3 26 26 H 1.08995 * 109.46957 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46879 * 300.00159 * 1 2 3 28 28 H 1.09000 * 109.47167 * 240.00307 * 2 1 3 29 29 H 1.09001 * 109.47945 * 119.99915 * 2 1 3 30 30 H 1.09000 * 109.47608 * 59.99443 * 4 3 2 31 31 H 1.08999 * 109.47239 * 300.00049 * 4 3 2 32 32 H 1.09001 * 109.47387 * 304.99576 * 5 4 3 33 33 H 1.09010 * 109.47112 * 185.00054 * 5 4 3 34 34 H 1.08994 * 109.47519 * 59.99281 * 7 6 5 35 35 H 1.09005 * 109.46907 * 299.99644 * 7 6 5 36 36 H 1.09001 * 109.46558 * 304.99871 * 8 7 6 37 37 H 1.08992 * 109.46928 * 184.99876 * 8 7 6 38 38 H 0.97002 * 120.00318 * 345.00345 * 9 8 7 39 39 H 1.08996 * 109.47300 * 293.87248 * 13 10 9 40 40 H 1.08999 * 109.47414 * 53.87300 * 13 10 9 41 41 H 0.96997 * 120.00232 * 180.02562 * 18 17 15 42 42 H 1.09003 * 117.49542 * 0.02562 * 23 14 13 43 43 H 1.09000 * 117.49964 * 145.01302 * 23 14 13 44 44 H 1.08997 * 117.50053 * 214.97519 * 24 14 13 45 45 H 1.08998 * 117.49690 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 -0.0012 6 8 3.3986 3.5458 1.2198 7 6 3.7193 4.9347 1.3213 8 6 3.2175 5.4775 2.6608 9 7 3.9468 4.8303 3.7541 10 16 3.8841 5.4663 5.2818 11 8 4.7080 4.6039 6.0545 12 8 4.2196 6.8358 5.1053 13 6 2.1463 5.2948 5.7726 14 6 1.9861 5.7114 7.2360 15 6 2.2600 7.1634 7.5321 16 1 3.2529 7.4785 7.8171 17 6 1.2429 8.0897 7.4394 18 7 1.4548 9.3372 7.7977 19 14 -0.4363 7.5727 6.8049 20 1 -1.3006 7.1869 7.9492 21 1 -1.0593 8.7051 6.0736 22 1 -0.2838 6.4150 5.8875 23 6 2.3667 4.6879 8.3078 24 6 0.8938 5.0178 8.0526 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8935 -0.5138 0.8900 30 1 3.8334 0.9766 -0.8907 31 1 3.8340 0.9765 0.8891 32 1 3.3493 3.4412 -0.8430 33 1 4.9083 3.0255 -0.0912 34 1 3.2408 5.4786 0.5070 35 1 4.7999 5.0635 1.2586 36 1 2.1523 5.2689 2.7611 37 1 3.3823 6.5541 2.7012 38 1 4.4633 4.0270 3.5840 39 1 1.5263 5.9331 5.1432 40 1 1.8361 4.2566 5.6545 41 1 0.7392 9.9887 7.7328 42 1 2.7316 3.7179 7.9702 43 1 2.8149 5.0648 9.2271 44 1 0.3737 5.6115 8.8042 45 1 0.2891 4.2649 7.5471 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921888733.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:53 Heat of formation + Delta-G solvation = -142.146418 kcal Electronic energy + Delta-G solvation = -25792.814770 eV Core-core repulsion = 21938.885924 eV Total energy + Delta-G solvation = -3853.928846 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.84565 -37.75991 -37.09034 -36.30298 -35.19148 -34.85757 -32.13957 -32.08693 -29.82821 -28.46118 -28.05503 -25.49377 -23.09293 -22.85976 -22.60736 -21.68207 -19.61680 -18.66075 -17.42129 -17.19909 -17.01091 -16.65003 -16.25830 -16.00431 -15.42654 -15.21445 -15.11226 -14.89853 -14.14925 -14.07154 -13.82506 -13.46869 -13.09445 -12.94220 -12.88079 -12.61490 -12.38415 -12.26857 -11.97343 -11.74403 -11.57257 -11.38338 -11.22430 -11.19784 -11.17485 -10.97117 -10.89841 -10.61936 -10.33913 -10.07582 -9.92458 -9.83813 -9.71590 -9.24422 -9.12396 -8.63892 -8.41825 -6.14631 -4.21898 1.00401 3.24735 3.30154 3.34571 3.34754 3.37547 3.49556 4.37448 4.45395 4.62720 4.71326 4.80649 4.82600 4.84200 4.89678 4.94676 5.02665 5.03897 5.09369 5.10652 5.13485 5.21762 5.34483 5.41865 5.46764 5.60401 5.65767 5.70137 5.78256 5.82901 5.96926 6.07570 6.11925 6.24819 6.46575 6.69221 6.85615 6.91590 6.98976 7.09654 7.28994 7.62647 8.39546 8.90883 9.46743 10.96862 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014043 B = 0.003406 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.329572 B = 8218.727479 C = 8819.944414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.064 3.936 5 C 0.063 3.937 6 O -0.377 6.377 7 C 0.056 3.944 8 C 0.118 3.882 9 N -1.129 6.129 10 S 2.616 3.384 11 O -0.969 6.969 12 O -0.942 6.942 13 C -0.577 4.577 14 C 0.001 3.999 15 C -0.509 4.509 16 H 0.087 0.913 17 C 0.089 3.911 18 N -0.883 5.883 19 Si 0.874 3.126 20 H -0.276 1.276 21 H -0.290 1.290 22 H -0.256 1.256 23 C -0.177 4.177 24 C -0.185 4.185 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.413 0.587 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.267 0.733 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 -16.590 -18.317 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.013 4.013 5 C -0.013 4.013 6 O -0.296 6.296 7 C -0.022 4.022 8 C -0.009 4.009 9 N -0.887 5.887 10 S 2.711 3.289 11 O -0.960 6.960 12 O -0.932 6.932 13 C -0.708 4.708 14 C -0.001 4.001 15 C -0.546 4.546 16 H 0.105 0.895 17 C -0.116 4.116 18 N -0.519 5.519 19 Si 0.701 3.299 20 H -0.201 1.201 21 H -0.217 1.217 22 H -0.180 1.180 23 C -0.214 4.214 24 C -0.224 4.224 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.246 0.754 39 H 0.143 0.857 40 H 0.126 0.874 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.393 -15.772 -17.686 23.738 hybrid contribution -1.216 -0.855 -0.850 1.713 sum 0.177 -16.627 -18.536 24.901 Atomic orbital electron populations 1.21739 0.93672 1.02172 1.03337 1.22461 0.95789 0.83856 0.99882 1.87978 1.20457 1.26208 1.95371 1.22514 0.82293 0.95668 1.00822 1.22506 0.98311 0.92584 0.87948 1.87984 1.81021 1.22940 1.37654 1.22722 0.99812 0.82354 0.97319 1.21311 0.96523 0.97729 0.85309 1.55886 1.64497 1.42342 1.25932 1.04886 0.77759 0.74190 0.72063 1.93514 1.65467 1.67981 1.69030 1.93573 1.81978 1.33708 1.83895 1.30293 1.24095 1.08049 1.08409 1.18856 1.01789 0.94931 0.84554 1.20353 0.98814 0.86901 1.48513 0.89524 1.24947 0.98622 0.94506 0.93535 1.69895 1.33528 1.02760 1.45685 0.86930 0.84430 0.78510 0.80052 1.20141 1.21695 1.18022 1.23021 0.97377 0.99125 1.01896 1.22983 0.91663 1.03228 1.04543 0.91941 0.91176 0.91576 0.93671 0.93317 0.92012 0.92293 0.92434 0.91747 0.91836 0.92309 0.91051 0.88526 0.75366 0.85658 0.87380 0.92312 0.89999 0.88662 0.88949 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.73 16 2 C 0.06 0.45 6.66 37.16 0.25 0.70 16 3 O -0.38 -4.07 10.31 -40.09 -0.41 -4.48 16 4 C 0.06 0.53 6.32 37.16 0.23 0.76 16 5 C 0.06 0.53 6.32 37.16 0.23 0.77 16 6 O -0.38 -4.31 10.11 -40.09 -0.41 -4.72 16 7 C 0.06 0.57 6.13 37.16 0.23 0.80 16 8 C 0.12 1.51 6.51 -4.04 -0.03 1.49 16 9 N -1.13 -16.69 5.85 -10.62 -0.06 -16.75 16 10 S 2.62 51.88 5.19 -107.50 -0.56 51.32 16 11 O -0.97 -21.01 18.08 -57.54 -1.04 -22.05 16 12 O -0.94 -22.33 17.18 -57.54 -0.99 -23.32 16 13 C -0.58 -11.50 5.54 37.16 0.21 -11.30 16 14 C 0.00 0.03 0.79 -155.66 -0.12 -0.09 16 15 C -0.51 -14.35 8.77 -34.44 -0.30 -14.65 16 16 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 17 C 0.09 2.53 5.47 -17.82 -0.10 2.44 16 18 N -0.88 -26.88 13.96 55.43 0.77 -26.11 16 19 Si 0.87 21.15 24.96 -169.99 -4.24 16.90 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.26 -5.70 5.68 56.52 0.32 -5.38 16 23 C -0.18 -3.73 9.96 -26.69 -0.27 -3.99 16 24 C -0.19 -3.92 7.67 -26.69 -0.20 -4.12 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.24 7.71 -51.93 -0.40 0.84 16 38 H 0.41 5.41 8.47 -34.47 -0.29 5.11 16 39 H 0.13 2.44 6.53 -51.93 -0.34 2.10 16 40 H 0.11 1.79 8.09 -51.92 -0.42 1.37 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 44 H 0.09 2.02 7.34 -51.93 -0.38 1.64 16 45 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 382.59 15.07 5.77 5.77 Total: -1.00 -36.14 382.59 -8.47 -44.61 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.81 Total: 6.75 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 0.51 Total: -27.93 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.71 Total: -42.86 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -2.85 Total: -54.57 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.24 Total: 16.90 kcal Atomic # 16 Polarization: 51.88 SS G_CDS: -0.56 Total: 51.32 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.14 -8.47 -44.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921888733.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.537 kcal (2) G-P(sol) polarization free energy of solvation -36.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds