Wall clock time and date at job start Fri Apr 10 2020 14:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.47274 * 2 1 4 4 C 1.42895 * 114.00109 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47066 * 179.97438 * 4 3 2 6 6 O 1.42896 * 109.47278 * 64.99986 * 5 4 3 7 7 C 1.42901 * 114.00188 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47257 * 179.97438 * 7 6 5 9 9 N 1.46497 * 109.47167 * 64.99621 * 8 7 6 10 10 S 1.65602 * 119.99699 * 165.27707 * 9 8 7 11 11 O 1.42108 * 104.27382 * 180.79762 * 10 9 8 12 12 O 1.42093 * 104.27799 * 308.65309 * 10 9 8 13 13 C 1.81394 * 104.45036 * 64.72636 * 10 9 8 14 14 C 1.52998 * 109.47299 * 173.87111 * 13 10 9 15 15 C 1.50699 * 115.54907 * 65.26885 * 14 13 10 16 16 H 1.07999 * 120.00357 * 268.54409 * 15 14 13 17 17 C 1.37880 * 119.99986 * 88.55068 * 15 14 13 18 18 N 1.31511 * 120.00224 * 174.70141 * 17 15 14 19 19 Si 1.86801 * 120.00053 * 354.69864 * 17 15 14 20 20 H 1.48499 * 109.47053 * 92.55135 * 19 17 15 21 21 H 1.48496 * 109.47263 * 212.55623 * 19 17 15 22 22 H 1.48498 * 109.46965 * 332.55652 * 19 17 15 23 23 C 1.53004 * 117.50138 * 279.60087 * 14 13 10 24 24 C 1.53000 * 117.50175 * 210.93986 * 14 13 10 25 25 H 1.09001 * 109.47202 * 60.00055 * 1 2 3 26 26 H 1.08995 * 109.46957 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46879 * 300.00159 * 1 2 3 28 28 H 1.09000 * 109.47167 * 240.00307 * 2 1 3 29 29 H 1.09001 * 109.47945 * 119.99915 * 2 1 3 30 30 H 1.09000 * 109.47608 * 59.99443 * 4 3 2 31 31 H 1.08999 * 109.47239 * 300.00049 * 4 3 2 32 32 H 1.09001 * 109.47387 * 304.99576 * 5 4 3 33 33 H 1.09010 * 109.47112 * 185.00054 * 5 4 3 34 34 H 1.08994 * 109.47519 * 59.99281 * 7 6 5 35 35 H 1.09005 * 109.46907 * 299.99644 * 7 6 5 36 36 H 1.09001 * 109.46558 * 304.99871 * 8 7 6 37 37 H 1.08992 * 109.46928 * 184.99876 * 8 7 6 38 38 H 0.97002 * 120.00318 * 345.00345 * 9 8 7 39 39 H 1.08996 * 109.47300 * 293.87248 * 13 10 9 40 40 H 1.08999 * 109.47414 * 53.87300 * 13 10 9 41 41 H 0.96997 * 120.00232 * 180.02562 * 18 17 15 42 42 H 1.09003 * 117.49542 * 0.02562 * 23 14 13 43 43 H 1.09000 * 117.49964 * 145.01302 * 23 14 13 44 44 H 1.08997 * 117.50053 * 214.97519 * 24 14 13 45 45 H 1.08998 * 117.49690 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 -0.0012 6 8 3.3986 3.5458 1.2198 7 6 3.7193 4.9347 1.3213 8 6 3.2175 5.4775 2.6608 9 7 3.9468 4.8303 3.7541 10 16 3.8841 5.4663 5.2818 11 8 4.7080 4.6039 6.0545 12 8 4.2196 6.8358 5.1053 13 6 2.1463 5.2948 5.7726 14 6 1.9861 5.7114 7.2360 15 6 2.2600 7.1634 7.5321 16 1 3.2529 7.4785 7.8171 17 6 1.2429 8.0897 7.4394 18 7 1.4548 9.3372 7.7977 19 14 -0.4363 7.5727 6.8049 20 1 -1.3006 7.1869 7.9492 21 1 -1.0593 8.7051 6.0736 22 1 -0.2838 6.4150 5.8875 23 6 2.3667 4.6879 8.3078 24 6 0.8938 5.0178 8.0526 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8935 -0.5138 0.8900 30 1 3.8334 0.9766 -0.8907 31 1 3.8340 0.9765 0.8891 32 1 3.3493 3.4412 -0.8430 33 1 4.9083 3.0255 -0.0912 34 1 3.2408 5.4786 0.5070 35 1 4.7999 5.0635 1.2586 36 1 2.1523 5.2689 2.7611 37 1 3.3823 6.5541 2.7012 38 1 4.4633 4.0270 3.5840 39 1 1.5263 5.9331 5.1432 40 1 1.8361 4.2566 5.6545 41 1 0.7392 9.9887 7.7328 42 1 2.7316 3.7179 7.9702 43 1 2.8149 5.0648 9.2271 44 1 0.3737 5.6115 8.8042 45 1 0.2891 4.2649 7.5471 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921888733.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:52 Heat of formation + Delta-G solvation = -171.607758 kcal Electronic energy + Delta-G solvation = -25794.092310 eV Core-core repulsion = 21938.885924 eV Total energy + Delta-G solvation = -3855.206386 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.53823 -38.84418 -38.48951 -37.96406 -36.82157 -35.98579 -34.28887 -32.68821 -30.56444 -30.08014 -28.91242 -27.59572 -23.66131 -23.53403 -23.46131 -23.35109 -21.38033 -20.26158 -18.65600 -18.46350 -18.02800 -17.82670 -17.46107 -16.93777 -16.88214 -16.60673 -16.23804 -16.00241 -15.57487 -15.28451 -14.87285 -14.81865 -14.60037 -14.14654 -14.01619 -13.86345 -13.52580 -13.28262 -13.21508 -12.96290 -12.91405 -12.77108 -12.65643 -12.38829 -12.35719 -12.27916 -12.04757 -12.00406 -11.85153 -11.75066 -11.67714 -10.96397 -10.72602 -10.57933 -10.54935 -10.50276 -10.09290 -8.31636 -6.44807 -0.54984 1.36608 1.38076 1.51550 2.01714 2.36426 2.68671 2.79112 2.87966 3.00992 3.15958 3.41927 3.78687 3.90934 4.12830 4.14750 4.18154 4.22605 4.27963 4.34696 4.37268 4.38090 4.46119 4.50445 4.51526 4.57537 4.62016 4.66275 4.72890 4.84137 4.85394 4.93058 5.02943 5.04810 5.05838 5.21496 5.28195 5.44900 5.62651 6.16837 6.20613 6.22935 6.36172 6.66603 7.27884 8.84669 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014043 B = 0.003406 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.329572 B = 8218.727479 C = 8819.944414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.410 6.410 4 C 0.059 3.941 5 C 0.057 3.943 6 O -0.400 6.400 7 C 0.059 3.941 8 C 0.104 3.896 9 N -1.110 6.110 10 S 2.624 3.376 11 O -0.994 6.994 12 O -0.993 6.993 13 C -0.573 4.573 14 C -0.032 4.032 15 C -0.514 4.514 16 H 0.029 0.971 17 C 0.027 3.973 18 N -0.941 5.941 19 Si 0.933 3.067 20 H -0.263 1.263 21 H -0.293 1.293 22 H -0.217 1.217 23 C -0.174 4.174 24 C -0.169 4.169 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.423 0.577 39 H 0.132 0.868 40 H 0.153 0.847 41 H 0.269 0.731 42 H 0.111 0.889 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.634 -19.758 -20.594 28.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.330 6.330 4 C -0.017 4.017 5 C -0.019 4.019 6 O -0.320 6.320 7 C -0.018 4.018 8 C -0.022 4.022 9 N -0.872 5.872 10 S 2.720 3.280 11 O -0.985 6.985 12 O -0.983 6.983 13 C -0.705 4.705 14 C -0.034 4.034 15 C -0.551 4.551 16 H 0.048 0.952 17 C -0.172 4.172 18 N -0.579 5.579 19 Si 0.756 3.244 20 H -0.188 1.188 21 H -0.220 1.220 22 H -0.139 1.139 23 C -0.211 4.211 24 C -0.208 4.208 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.259 0.741 39 H 0.150 0.850 40 H 0.171 0.829 41 H 0.078 0.922 42 H 0.129 0.871 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.253 -18.979 -19.966 27.548 hybrid contribution -0.573 0.113 -0.133 0.599 sum -0.826 -18.866 -20.098 27.578 Atomic orbital electron populations 1.21765 0.93500 1.03177 1.02440 1.22618 0.96041 0.83117 1.00787 1.87937 1.21788 1.27684 1.95582 1.22682 0.81427 0.95787 1.01849 1.22727 0.99662 0.92536 0.86982 1.87939 1.81565 1.23257 1.39209 1.22700 1.00575 0.82391 0.96163 1.21600 0.97060 0.97601 0.85895 1.55368 1.64788 1.42547 1.24520 1.04307 0.77864 0.73004 0.72834 1.93467 1.66492 1.67998 1.70511 1.93517 1.83023 1.36773 1.84962 1.30167 1.23708 1.10916 1.05759 1.18779 1.05052 0.92548 0.87061 1.20461 0.96431 0.90302 1.47936 0.95244 1.25936 1.03425 0.94180 0.93671 1.70063 1.35252 1.04517 1.48095 0.85972 0.78554 0.79425 0.80495 1.18836 1.21961 1.13874 1.23100 0.97966 0.99505 1.00535 1.23084 0.91558 1.02893 1.03220 0.92209 0.89272 0.93025 0.91957 0.93155 0.89542 0.92639 0.91958 0.89636 0.89716 0.91300 0.89972 0.89094 0.74082 0.84952 0.82872 0.92220 0.87076 0.90110 0.90158 0.86560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 71.98 0.74 -1.21 16 2 C 0.05 0.70 6.66 71.98 0.48 1.18 16 3 O -0.41 -7.93 10.31 -144.34 -1.49 -9.42 16 4 C 0.06 0.83 6.32 71.98 0.45 1.28 16 5 C 0.06 0.81 6.32 71.98 0.45 1.26 16 6 O -0.40 -8.07 10.11 -144.34 -1.46 -9.53 16 7 C 0.06 1.07 6.13 71.98 0.44 1.51 16 8 C 0.10 2.46 6.51 86.38 0.56 3.02 16 9 N -1.11 -30.83 5.85 -187.50 -1.10 -31.93 16 10 S 2.62 102.53 5.19 -56.49 -0.29 102.24 16 11 O -0.99 -42.63 18.08 -127.65 -2.31 -44.94 16 12 O -0.99 -48.56 17.18 -127.65 -2.19 -50.76 16 13 C -0.57 -21.21 5.54 71.98 0.40 -20.81 16 14 C -0.03 -1.44 0.79 -52.93 -0.04 -1.48 16 15 C -0.51 -29.88 8.77 25.60 0.22 -29.65 16 16 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 17 C 0.03 1.57 5.47 84.66 0.46 2.04 16 18 N -0.94 -59.84 13.96 21.45 0.30 -59.55 16 19 Si 0.93 42.50 24.96 68.60 1.71 44.21 16 20 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.22 -8.42 5.68 99.48 0.57 -7.85 16 23 C -0.17 -6.98 9.96 30.62 0.30 -6.68 16 24 C -0.17 -6.54 7.67 30.62 0.23 -6.30 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.09 2.25 7.71 -2.39 -0.02 2.23 16 38 H 0.42 10.19 8.47 -96.74 -0.82 9.37 16 39 H 0.13 4.71 6.53 -2.39 -0.02 4.70 16 40 H 0.15 4.25 8.09 -2.39 -0.02 4.23 16 41 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 42 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 43 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 44 H 0.08 3.31 7.34 -2.39 -0.02 3.29 16 45 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 Total: -1.00 -82.43 382.59 -2.11 -84.54 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.00 Total: 30.97 kcal Atomic # 6 Polarization: -60.56 SS G_CDS: 4.72 Total: -55.84 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -0.80 Total: -91.48 kcal Atomic # 8 Polarization: -107.20 SS G_CDS: -7.45 Total: -114.65 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.71 Total: 44.21 kcal Atomic # 16 Polarization: 102.53 SS G_CDS: -0.29 Total: 102.24 kcal Total: -82.43 -2.11 -84.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921888733.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.067 kcal (2) G-P(sol) polarization free energy of solvation -82.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds