Wall clock time and date at job start Fri Apr 10 2020 14:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99893 * 2 1 4 4 O 1.20825 * 119.99953 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99951 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.46808 * 60.00268 * 5 3 2 7 7 N 1.46505 * 109.46864 * 179.97438 * 5 3 2 8 8 C 1.34774 * 119.99734 * 204.99948 * 7 5 3 9 9 O 1.21281 * 120.00194 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99574 * 180.02562 * 8 7 5 11 11 H 1.09004 * 109.47230 * 60.00440 * 10 8 7 12 12 C 1.50696 * 109.47260 * 299.99895 * 10 8 7 13 13 H 1.07999 * 119.99984 * 324.88506 * 12 10 8 14 14 C 1.37881 * 120.00003 * 144.88451 * 12 10 8 15 15 N 1.31513 * 120.00173 * 5.18920 * 14 12 10 16 16 Si 1.86799 * 119.99842 * 185.19202 * 14 12 10 17 17 H 1.48504 * 109.46957 * 89.99690 * 16 14 12 18 18 H 1.48494 * 109.47286 * 209.99508 * 16 14 12 19 19 H 1.48504 * 109.47305 * 329.99932 * 16 14 12 20 20 C 1.50708 * 109.46769 * 179.97438 * 10 8 7 21 21 C 1.38232 * 119.99653 * 66.01463 * 20 10 8 22 22 C 1.38244 * 119.99683 * 179.78734 * 21 20 10 23 23 C 1.38236 * 119.99847 * 0.43733 * 22 21 20 24 24 C 1.38233 * 120.00128 * 359.81285 * 23 22 21 25 25 C 1.38235 * 119.99836 * 246.27903 * 20 10 8 26 26 C 1.52999 * 109.47007 * 300.00095 * 5 3 2 27 27 H 1.08997 * 109.47477 * 299.99763 * 26 5 3 28 28 C 1.52992 * 109.47093 * 60.00128 * 26 5 3 29 29 O 1.42909 * 109.46659 * 180.02562 * 26 5 3 30 30 H 1.08999 * 109.46933 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46934 * 299.99714 * 1 2 3 32 32 H 1.08998 * 109.47158 * 60.00012 * 1 2 3 33 33 H 0.96995 * 120.00206 * 25.00535 * 7 5 3 34 34 H 0.96994 * 119.99898 * 179.97438 * 15 14 12 35 35 H 1.08001 * 120.00348 * 359.97438 * 21 20 10 36 36 H 1.07994 * 119.99917 * 180.27524 * 22 21 20 37 37 H 1.07996 * 119.99702 * 179.83807 * 23 22 21 38 38 H 1.07999 * 120.00237 * 179.97438 * 24 23 22 39 39 H 1.08002 * 120.00282 * 359.97438 * 25 20 10 40 40 H 1.09001 * 109.47206 * 60.00007 * 28 26 5 41 41 H 1.09002 * 109.47072 * 179.97438 * 28 26 5 42 42 H 1.08998 * 109.47105 * 299.99654 * 28 26 5 43 43 H 0.96692 * 114.00233 * 59.99738 * 29 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9556 0.7810 -0.8908 7 7 3.9816 2.6799 -0.0011 8 6 5.1869 3.0260 -0.4949 9 8 5.9275 2.1746 -0.9393 10 6 5.6143 4.4712 -0.4949 11 1 5.6321 4.8448 0.5290 12 6 4.6404 5.2831 -1.3092 13 1 4.1821 4.8542 -2.1881 14 6 4.3343 6.5736 -0.9323 15 7 4.9671 7.1316 0.0766 16 14 3.0208 7.5293 -1.8545 17 1 1.6995 7.2945 -1.2185 18 1 3.3406 8.9787 -1.8106 19 1 2.9778 7.0743 -3.2675 20 6 6.9917 4.5876 -1.0954 21 6 7.1908 4.2904 -2.4307 22 6 8.4534 4.4015 -2.9826 23 6 9.5184 4.8009 -2.1971 24 6 9.3202 5.0931 -0.8606 25 6 8.0568 4.9863 -0.3097 26 6 4.1138 0.5811 1.2483 27 1 3.7245 1.0749 2.1385 28 6 3.6801 -0.8861 1.2481 29 8 5.5409 0.6564 1.2480 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.3892 3.3609 0.3540 34 1 4.7521 8.0395 0.3415 35 1 6.3594 3.9745 -3.0434 36 1 8.6081 4.1736 -4.0269 37 1 10.5052 4.8852 -2.6277 38 1 10.1523 5.4048 -0.2468 39 1 7.9020 5.2147 0.7345 40 1 4.0695 -1.3800 0.3579 41 1 4.0705 -1.3805 2.1376 42 1 2.5916 -0.9431 1.2486 43 1 5.8871 1.5593 1.2482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412592235.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:58 Heat of formation + Delta-G solvation = -146.330005 kcal Electronic energy + Delta-G solvation = -28066.828438 eV Core-core repulsion = 24077.274227 eV Total energy + Delta-G solvation = -3989.554211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.89558 -39.36988 -38.06310 -36.79489 -36.62927 -33.86614 -33.64352 -31.44741 -31.05733 -29.94295 -28.37307 -27.64846 -26.20628 -23.86102 -22.35689 -21.62826 -21.28858 -20.33165 -19.62210 -17.88643 -17.62506 -17.11591 -16.72013 -16.26029 -15.99098 -15.67111 -15.50214 -14.52346 -14.51453 -14.20648 -13.96614 -13.60176 -13.40194 -13.20668 -13.04307 -12.59555 -12.47990 -12.32701 -12.25281 -12.05157 -11.92149 -11.68232 -11.62935 -11.31728 -11.04710 -11.02941 -10.80166 -10.48188 -10.41270 -10.28911 -10.09009 -10.04098 -9.46795 -8.88011 -8.70903 -8.59263 -7.95088 -7.63278 -6.30277 -4.36658 2.07634 2.32137 2.38055 2.46799 3.20535 3.27418 3.29656 3.49287 3.75274 4.27155 4.40808 4.58503 4.79803 4.87014 4.95531 5.02863 5.04445 5.07372 5.35350 5.37189 5.53123 5.72285 5.78391 5.84983 5.88467 5.98381 6.14033 6.15853 6.23233 6.29534 6.47974 6.57464 6.79734 6.86342 6.94953 7.12789 7.36658 7.42830 7.60317 7.61642 7.72379 7.79501 7.91901 8.02594 8.16020 8.66180 9.00845 9.29873 10.77926 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011001 B = 0.005153 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.680561 B = 5432.842045 C = 7242.253761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.351 6.351 3 C 0.460 3.540 4 O -0.488 6.488 5 C 0.120 3.880 6 H 0.128 0.872 7 N -0.721 5.721 8 C 0.525 3.475 9 O -0.547 6.547 10 C 0.054 3.946 11 H 0.091 0.909 12 C -0.516 4.516 13 H 0.063 0.937 14 C 0.076 3.924 15 N -0.876 5.876 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.010 4.010 21 C -0.084 4.084 22 C -0.134 4.134 23 C -0.148 4.148 24 C -0.131 4.131 25 C -0.117 4.117 26 C 0.102 3.898 27 H 0.057 0.943 28 C -0.154 4.154 29 O -0.545 6.545 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.416 0.584 34 H 0.267 0.733 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.160 -11.040 2.589 12.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.267 6.267 3 C 0.301 3.699 4 O -0.374 6.374 5 C 0.012 3.988 6 H 0.146 0.854 7 N -0.378 5.378 8 C 0.315 3.685 9 O -0.424 6.424 10 C 0.033 3.967 11 H 0.109 0.891 12 C -0.554 4.554 13 H 0.081 0.919 14 C -0.130 4.130 15 N -0.512 5.512 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.012 4.012 21 C -0.103 4.103 22 C -0.152 4.152 23 C -0.166 4.166 24 C -0.150 4.150 25 C -0.135 4.135 26 C 0.041 3.959 27 H 0.075 0.925 28 C -0.211 4.211 29 O -0.353 6.353 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.107 0.893 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -3.906 -11.794 2.376 12.649 hybrid contribution -1.269 1.808 -0.484 2.261 sum -5.175 -9.986 1.892 11.405 Atomic orbital electron populations 1.23305 0.76548 1.03663 1.02784 1.86583 1.23269 1.32813 1.84071 1.23690 0.91765 0.81725 0.72738 1.90721 1.66572 1.36099 1.43958 1.21254 0.86492 0.87416 1.03627 0.85415 1.45999 1.20327 1.05873 1.65627 1.21983 0.79362 0.92871 0.74273 1.90672 1.53026 1.52670 1.46015 1.18105 0.90740 0.86849 1.00961 0.89113 1.20659 1.24541 0.98172 1.11986 0.91906 1.24948 0.95811 0.97372 0.94838 1.69902 1.39822 1.14658 1.26799 0.86473 0.81652 0.78946 0.80385 1.20214 1.21031 1.19664 1.19961 0.94491 0.93293 0.93407 1.20813 0.95869 0.98331 0.95251 1.20949 0.93535 1.01893 0.98829 1.20802 0.97967 1.03315 0.94486 1.20900 0.96825 1.02006 0.95220 1.20972 0.92240 1.00732 0.99538 1.21984 0.82990 0.96941 0.94020 0.92499 1.21984 1.02449 0.93404 1.03264 1.86501 1.18107 1.33809 1.96841 0.88014 0.91776 0.91788 0.74567 0.92284 0.87202 0.87627 0.87726 0.87546 0.86968 0.91408 0.91661 0.89341 0.76924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.35 -4.07 7.48 -39.26 -0.29 -4.37 16 3 C 0.46 6.71 7.26 36.01 0.26 6.97 16 4 O -0.49 -8.46 15.59 -18.75 -0.29 -8.75 16 5 C 0.12 1.86 2.49 -69.08 -0.17 1.69 16 6 H 0.13 2.11 7.58 -51.93 -0.39 1.71 16 7 N -0.72 -13.07 4.76 -54.93 -0.26 -13.33 16 8 C 0.52 10.88 5.64 -10.99 -0.06 10.81 16 9 O -0.55 -12.11 13.45 -11.85 -0.16 -12.27 16 10 C 0.05 1.24 2.38 -94.07 -0.22 1.02 16 11 H 0.09 2.17 7.13 -51.93 -0.37 1.80 16 12 C -0.52 -12.83 7.47 -34.44 -0.26 -13.09 16 13 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 14 C 0.08 1.92 5.45 -17.82 -0.10 1.82 16 15 N -0.88 -22.95 12.84 55.43 0.71 -22.24 16 16 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 20 C -0.01 -0.24 4.30 -104.62 -0.45 -0.69 16 21 C -0.08 -1.86 8.31 -39.58 -0.33 -2.19 16 22 C -0.13 -2.61 10.05 -39.58 -0.40 -3.01 16 23 C -0.15 -2.71 10.05 -39.58 -0.40 -3.11 16 24 C -0.13 -2.49 10.05 -39.58 -0.40 -2.88 16 25 C -0.12 -2.47 9.67 -39.58 -0.38 -2.85 16 26 C 0.10 1.43 3.41 -26.74 -0.09 1.34 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 C -0.15 -1.76 9.04 37.15 0.34 -1.43 16 29 O -0.55 -9.11 12.47 -52.64 -0.66 -9.76 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 32 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 33 H 0.42 7.80 7.68 -40.82 -0.31 7.48 16 34 H 0.27 6.73 8.31 -40.82 -0.34 6.40 16 35 H 0.11 2.47 7.90 -52.49 -0.41 2.05 16 36 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.11 2.27 7.96 -52.49 -0.42 1.85 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.89 5.32 -51.93 -0.28 0.62 16 43 H 0.38 6.53 6.54 45.56 0.30 6.83 16 LS Contribution 362.79 15.07 5.47 5.47 Total: -1.00 -29.39 362.79 -7.34 -36.72 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -5.24 Total: 17.49 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.59 Total: -4.26 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.45 Total: -35.56 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.40 Total: -35.14 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.39 -7.34 -36.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412592235.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.608 kcal (2) G-P(sol) polarization free energy of solvation -29.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds