Wall clock time and date at job start Fri Apr 10 2020 14:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99893 * 2 1 4 4 O 1.20825 * 119.99953 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99951 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.46808 * 60.00268 * 5 3 2 7 7 N 1.46505 * 109.46864 * 179.97438 * 5 3 2 8 8 C 1.34774 * 119.99734 * 204.99948 * 7 5 3 9 9 O 1.21281 * 120.00194 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99574 * 180.02562 * 8 7 5 11 11 H 1.09004 * 109.47230 * 60.00440 * 10 8 7 12 12 C 1.50696 * 109.47260 * 299.99895 * 10 8 7 13 13 H 1.07999 * 119.99984 * 324.88506 * 12 10 8 14 14 C 1.37881 * 120.00003 * 144.88451 * 12 10 8 15 15 N 1.31513 * 120.00173 * 5.18920 * 14 12 10 16 16 Si 1.86799 * 119.99842 * 185.19202 * 14 12 10 17 17 H 1.48504 * 109.46957 * 89.99690 * 16 14 12 18 18 H 1.48494 * 109.47286 * 209.99508 * 16 14 12 19 19 H 1.48504 * 109.47305 * 329.99932 * 16 14 12 20 20 C 1.50708 * 109.46769 * 179.97438 * 10 8 7 21 21 C 1.38232 * 119.99653 * 66.01463 * 20 10 8 22 22 C 1.38244 * 119.99683 * 179.78734 * 21 20 10 23 23 C 1.38236 * 119.99847 * 0.43733 * 22 21 20 24 24 C 1.38233 * 120.00128 * 359.81285 * 23 22 21 25 25 C 1.38235 * 119.99836 * 246.27903 * 20 10 8 26 26 C 1.52999 * 109.47007 * 300.00095 * 5 3 2 27 27 H 1.08997 * 109.47477 * 299.99763 * 26 5 3 28 28 C 1.52992 * 109.47093 * 60.00128 * 26 5 3 29 29 O 1.42909 * 109.46659 * 180.02562 * 26 5 3 30 30 H 1.08999 * 109.46933 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46934 * 299.99714 * 1 2 3 32 32 H 1.08998 * 109.47158 * 60.00012 * 1 2 3 33 33 H 0.96995 * 120.00206 * 25.00535 * 7 5 3 34 34 H 0.96994 * 119.99898 * 179.97438 * 15 14 12 35 35 H 1.08001 * 120.00348 * 359.97438 * 21 20 10 36 36 H 1.07994 * 119.99917 * 180.27524 * 22 21 20 37 37 H 1.07996 * 119.99702 * 179.83807 * 23 22 21 38 38 H 1.07999 * 120.00237 * 179.97438 * 24 23 22 39 39 H 1.08002 * 120.00282 * 359.97438 * 25 20 10 40 40 H 1.09001 * 109.47206 * 60.00007 * 28 26 5 41 41 H 1.09002 * 109.47072 * 179.97438 * 28 26 5 42 42 H 1.08998 * 109.47105 * 299.99654 * 28 26 5 43 43 H 0.96692 * 114.00233 * 59.99738 * 29 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9556 0.7810 -0.8908 7 7 3.9816 2.6799 -0.0011 8 6 5.1869 3.0260 -0.4949 9 8 5.9275 2.1746 -0.9393 10 6 5.6143 4.4712 -0.4949 11 1 5.6321 4.8448 0.5290 12 6 4.6404 5.2831 -1.3092 13 1 4.1821 4.8542 -2.1881 14 6 4.3343 6.5736 -0.9323 15 7 4.9671 7.1316 0.0766 16 14 3.0208 7.5293 -1.8545 17 1 1.6995 7.2945 -1.2185 18 1 3.3406 8.9787 -1.8106 19 1 2.9778 7.0743 -3.2675 20 6 6.9917 4.5876 -1.0954 21 6 7.1908 4.2904 -2.4307 22 6 8.4534 4.4015 -2.9826 23 6 9.5184 4.8009 -2.1971 24 6 9.3202 5.0931 -0.8606 25 6 8.0568 4.9863 -0.3097 26 6 4.1138 0.5811 1.2483 27 1 3.7245 1.0749 2.1385 28 6 3.6801 -0.8861 1.2481 29 8 5.5409 0.6564 1.2480 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.3892 3.3609 0.3540 34 1 4.7521 8.0395 0.3415 35 1 6.3594 3.9745 -3.0434 36 1 8.6081 4.1736 -4.0269 37 1 10.5052 4.8852 -2.6277 38 1 10.1523 5.4048 -0.2468 39 1 7.9020 5.2147 0.7345 40 1 4.0695 -1.3800 0.3579 41 1 4.0705 -1.3805 2.1376 42 1 2.5916 -0.9431 1.2486 43 1 5.8871 1.5593 1.2482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412592235.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:58 Heat of formation + Delta-G solvation = -164.449285 kcal Electronic energy + Delta-G solvation = -28067.614149 eV Core-core repulsion = 24077.274227 eV Total energy + Delta-G solvation = -3990.339922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.11902 -40.88406 -39.54469 -38.16970 -37.76147 -35.56712 -35.22644 -32.98332 -32.52917 -31.50913 -29.57482 -28.92776 -27.49083 -25.66270 -23.45661 -23.20349 -22.73883 -21.61871 -21.19186 -19.26171 -18.86724 -18.52682 -18.36691 -17.56254 -17.32175 -17.17331 -16.90017 -16.26976 -15.90009 -15.70575 -15.41447 -14.92626 -14.79764 -14.54743 -14.41192 -14.03650 -13.96720 -13.72058 -13.45566 -13.30961 -13.18943 -13.05076 -12.94259 -12.84898 -12.78726 -12.44228 -12.23251 -11.94930 -11.76347 -11.69542 -11.66811 -11.36086 -11.27932 -10.71059 -10.53609 -10.06849 -9.52969 -9.25060 -8.24760 -6.35229 0.78267 0.81016 0.88869 1.29156 1.38973 1.41620 1.49151 1.83574 2.30938 2.40002 3.05443 3.24136 3.28276 3.44847 3.71420 3.83265 4.21011 4.26074 4.30519 4.32279 4.33024 4.34287 4.43597 4.52120 4.57691 4.71257 4.88644 4.92112 4.98666 5.01353 5.09264 5.12332 5.34969 5.36755 5.38267 5.46233 5.62545 5.81378 5.84061 5.92845 6.23370 6.39075 6.45836 6.49211 6.57715 6.70913 7.30889 7.37391 8.82994 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011001 B = 0.005153 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.680561 B = 5432.842045 C = 7242.253761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.341 6.341 3 C 0.471 3.529 4 O -0.519 6.519 5 C 0.119 3.881 6 H 0.119 0.881 7 N -0.716 5.716 8 C 0.531 3.469 9 O -0.562 6.562 10 C 0.056 3.944 11 H 0.072 0.928 12 C -0.518 4.518 13 H 0.048 0.952 14 C 0.038 3.962 15 N -0.900 5.900 16 Si 0.948 3.052 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.275 1.275 20 C -0.035 4.035 21 C -0.110 4.110 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.129 4.129 25 C -0.137 4.137 26 C 0.100 3.900 27 H 0.068 0.932 28 C -0.147 4.147 29 O -0.559 6.559 30 H 0.141 0.859 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.413 0.587 34 H 0.268 0.732 35 H 0.093 0.907 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.110 0.890 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.997 -12.065 2.389 12.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.257 6.257 3 C 0.313 3.687 4 O -0.407 6.407 5 C 0.012 3.988 6 H 0.136 0.864 7 N -0.371 5.371 8 C 0.321 3.679 9 O -0.441 6.441 10 C 0.035 3.965 11 H 0.090 0.910 12 C -0.556 4.556 13 H 0.067 0.933 14 C -0.165 4.165 15 N -0.537 5.537 16 Si 0.774 3.226 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.200 1.200 20 C -0.036 4.036 21 C -0.129 4.129 22 C -0.154 4.154 23 C -0.161 4.161 24 C -0.147 4.147 25 C -0.156 4.156 26 C 0.039 3.961 27 H 0.086 0.914 28 C -0.204 4.204 29 O -0.365 6.365 30 H 0.159 0.841 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.251 0.749 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.151 0.849 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.128 0.872 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.123 0.877 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.770 -12.861 2.183 13.579 hybrid contribution -1.326 2.028 -0.430 2.461 sum -5.096 -10.833 1.753 12.099 Atomic orbital electron populations 1.23687 0.74334 1.06260 1.02727 1.86563 1.25220 1.30693 1.83202 1.23349 0.91129 0.82178 0.72039 1.90715 1.67021 1.37295 1.45650 1.21363 0.87717 0.85564 1.04190 0.86361 1.45854 1.19328 1.07264 1.64625 1.21517 0.80015 0.91948 0.74397 1.90647 1.53709 1.52766 1.46990 1.17981 0.91154 0.87816 0.99530 0.90962 1.20722 1.24773 0.98525 1.11560 0.93331 1.25509 0.97327 0.98085 0.95582 1.69982 1.40944 1.14868 1.27888 0.85699 0.79854 0.77893 0.79138 1.19793 1.20703 1.19994 1.20018 0.94706 0.94814 0.94097 1.20832 0.96850 1.00102 0.95083 1.21300 0.92720 1.00932 1.00410 1.21265 0.99348 1.01392 0.94058 1.21305 0.96677 1.00638 0.96082 1.21134 0.93219 1.01579 0.99639 1.22216 0.81711 0.98742 0.93437 0.91401 1.21992 1.03433 0.91229 1.03722 1.86492 1.19745 1.33429 1.96872 0.84068 0.91455 0.92330 0.74942 0.92290 0.88916 0.84909 0.83702 0.84260 0.87155 0.91732 0.90422 0.87702 0.77567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.56 113.37 1.20 1.54 16 2 O -0.34 -7.28 7.48 -51.42 -0.38 -7.67 16 3 C 0.47 13.49 7.26 71.24 0.52 14.01 16 4 O -0.52 -17.95 15.59 21.97 0.34 -17.61 16 5 C 0.12 3.70 2.49 44.24 0.11 3.81 16 6 H 0.12 3.96 7.58 -2.39 -0.02 3.94 16 7 N -0.72 -26.84 4.76 -446.09 -2.12 -28.96 16 8 C 0.53 22.96 5.64 87.66 0.49 23.46 16 9 O -0.56 -25.76 13.45 13.61 0.18 -25.58 16 10 C 0.06 2.69 2.38 -13.03 -0.03 2.66 16 11 H 0.07 3.66 7.13 -2.38 -0.02 3.64 16 12 C -0.52 -26.71 7.47 25.60 0.19 -26.51 16 13 H 0.05 2.59 7.82 -2.91 -0.02 2.56 16 14 C 0.04 1.94 5.45 84.66 0.46 2.41 16 15 N -0.90 -48.25 12.84 21.45 0.28 -47.97 16 16 Si 0.95 42.26 29.54 68.60 2.03 44.28 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 C -0.04 -1.65 4.30 -19.86 -0.09 -1.73 16 21 C -0.11 -4.96 8.31 22.27 0.18 -4.77 16 22 C -0.14 -5.10 10.05 22.27 0.22 -4.88 16 23 C -0.14 -4.84 10.05 22.27 0.22 -4.62 16 24 C -0.13 -4.64 10.05 22.27 0.22 -4.42 16 25 C -0.14 -5.87 9.67 22.27 0.22 -5.65 16 26 C 0.10 2.74 3.41 30.59 0.10 2.85 16 27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 28 C -0.15 -3.10 9.04 71.98 0.65 -2.44 16 29 O -0.56 -18.76 12.47 -132.33 -1.65 -20.41 16 30 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 32 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 33 H 0.41 16.10 7.68 -92.71 -0.71 15.39 16 34 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 35 H 0.09 4.35 7.90 -2.91 -0.02 4.33 16 36 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 37 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 39 H 0.11 4.60 7.96 -2.91 -0.02 4.58 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.10 1.85 5.32 -2.39 -0.01 1.84 16 43 H 0.38 13.31 6.54 -74.06 -0.48 12.82 16 Total: -1.00 -64.40 362.79 3.20 -61.20 By element: Atomic # 1 Polarization: 47.18 SS G_CDS: -0.15 Total: 47.03 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 4.68 Total: -4.31 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -1.85 Total: -76.93 kcal Atomic # 8 Polarization: -69.76 SS G_CDS: -1.51 Total: -71.27 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -64.40 3.20 -61.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412592235.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.249 kcal (2) G-P(sol) polarization free energy of solvation -64.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds