Wall clock time and date at job start Fri Apr 10 2020 14:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35893 * 116.99726 * 2 1 4 4 C 1.38769 * 120.03157 * 0.28087 * 3 2 1 5 5 C 1.38187 * 120.05606 * 180.27366 * 4 3 2 6 6 C 1.38176 * 120.10539 * 359.72088 * 5 4 3 7 7 C 1.38775 * 120.05410 * 0.02562 * 6 5 4 8 8 O 1.35903 * 120.02448 * 180.02562 * 7 6 5 9 9 C 1.42904 * 116.99756 * 359.97438 * 8 7 6 10 10 C 1.38631 * 119.94933 * 359.97438 * 7 6 5 11 11 C 1.50702 * 120.05551 * 180.02562 * 10 7 6 12 12 C 1.50696 * 109.47060 * 90.00102 * 11 10 7 13 13 O 1.21284 * 119.99855 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00197 * 179.97438 * 12 11 10 15 15 C 1.47581 * 134.49354 * 180.02562 * 14 12 11 16 16 C 1.53945 * 86.11895 * 155.35947 * 15 14 12 17 17 O 1.42904 * 113.73986 * 269.15696 * 16 15 14 18 18 C 1.50694 * 113.74220 * 137.95139 * 16 15 14 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 16 15 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 16 15 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.47582 * 134.48982 * 359.97438 * 14 12 11 27 27 H 1.09009 * 109.46878 * 299.99489 * 1 2 3 28 28 H 1.08996 * 109.47708 * 59.99487 * 1 2 3 29 29 H 1.09001 * 109.47229 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.97432 * 359.97438 * 4 3 2 31 31 H 1.07991 * 119.94496 * 179.74950 * 5 4 3 32 32 H 1.07993 * 119.97021 * 179.97438 * 6 5 4 33 33 H 1.08995 * 109.47273 * 299.99600 * 9 8 7 34 34 H 1.08996 * 109.47265 * 60.00461 * 9 8 7 35 35 H 1.08999 * 109.46558 * 180.02562 * 9 8 7 36 36 H 1.08994 * 109.46986 * 330.00203 * 11 10 7 37 37 H 1.09001 * 109.47133 * 210.00089 * 11 10 7 38 38 H 1.09001 * 113.77016 * 41.05438 * 15 14 12 39 39 H 1.09005 * 113.86980 * 269.67513 * 15 14 12 40 40 H 0.96699 * 113.99284 * 178.07513 * 17 16 15 41 41 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 42 42 H 1.09002 * 113.76615 * 90.34214 * 26 14 12 43 43 H 1.08991 * 113.77327 * 318.94082 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2907 2.3750 0.0059 5 6 1.9174 3.6066 0.0002 6 6 3.2971 3.6821 -0.0056 7 6 4.0567 2.5207 -0.0062 8 8 5.4137 2.5957 -0.0113 9 6 5.9911 3.9029 -0.0165 10 6 3.4303 1.2840 -0.0005 11 6 4.2529 0.0213 -0.0005 12 6 4.5328 -0.3959 1.4202 13 8 4.1059 0.2666 2.3421 14 7 5.2566 -1.5058 1.6665 15 6 5.7110 -2.1938 2.8905 16 6 5.7710 -3.4669 2.0270 17 8 4.5574 -4.2215 2.0296 18 6 6.9907 -4.3148 2.2803 19 1 7.7208 -4.0055 3.0136 20 6 7.1747 -5.4857 1.5758 21 7 6.2854 -5.8627 0.6832 22 14 8.6870 -6.5365 1.8892 23 1 8.6487 -7.7335 1.0111 24 1 9.9089 -5.7454 1.5956 25 1 8.7052 -6.9663 3.3105 26 6 5.9123 -2.5218 0.8204 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.2122 2.3186 0.0101 31 1 1.3279 4.5114 0.0007 32 1 3.7846 4.6457 -0.0105 33 1 5.6648 4.4408 -0.9065 34 1 5.6713 4.4449 0.8734 35 1 7.0779 3.8199 -0.0207 36 1 5.1948 0.2014 -0.5186 37 1 3.7035 -0.7702 -0.5101 38 1 4.9584 -2.2321 3.6781 39 1 6.6847 -1.8596 3.2487 40 1 4.5812 -5.0063 1.4651 41 1 6.4151 -6.6863 0.1873 42 1 6.9455 -2.2830 0.5681 43 1 5.3205 -2.8220 -0.0441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186849093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:45 Heat of formation + Delta-G solvation = -91.830954 kcal Electronic energy + Delta-G solvation = -27599.176733 eV Core-core repulsion = 23611.985777 eV Total energy + Delta-G solvation = -3987.190955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.64723 -39.19028 -38.96126 -37.16106 -36.31262 -33.81509 -32.71945 -32.12903 -29.51270 -29.08756 -27.84638 -27.37369 -26.43294 -25.12646 -24.89057 -21.85213 -21.76606 -19.90514 -18.57696 -18.01700 -17.30186 -16.86330 -16.32735 -16.31179 -15.85160 -15.64742 -15.48590 -15.19387 -14.82016 -14.64086 -14.54944 -14.05490 -13.37400 -13.30467 -13.00280 -12.68740 -12.55931 -12.34229 -12.21407 -12.05255 -11.88146 -11.57461 -11.52381 -11.46968 -11.14263 -11.00488 -10.97648 -10.73748 -10.69590 -10.47829 -10.20946 -9.51409 -9.07913 -8.69611 -8.35334 -8.16660 -8.09679 -7.66522 -6.32911 -4.42964 1.36771 1.47941 2.93942 3.20158 3.25638 3.28173 3.46503 3.60803 3.69009 3.94176 4.23882 4.68157 4.90851 4.93355 4.95212 4.97453 5.05398 5.08486 5.14671 5.27842 5.31480 5.36322 5.41579 5.48923 5.66613 5.74415 5.79217 6.09422 6.13022 6.17260 6.32608 6.37628 6.45098 6.50582 6.51299 6.64875 6.77022 6.82683 7.19942 7.34250 7.44946 7.69479 7.90365 8.59496 8.68420 8.99943 9.27987 9.54826 10.73512 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018197 B = 0.003401 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.314383 B = 8229.888244 C = 9204.868132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.306 6.306 3 C 0.178 3.822 4 C -0.245 4.245 5 C -0.046 4.046 6 C -0.246 4.246 7 C 0.176 3.824 8 O -0.308 6.308 9 C 0.029 3.971 10 C -0.122 4.122 11 C -0.079 4.079 12 C 0.539 3.461 13 O -0.561 6.561 14 N -0.634 5.634 15 C 0.112 3.888 16 C 0.239 3.761 17 O -0.572 6.572 18 C -0.536 4.536 19 H 0.070 0.930 20 C 0.072 3.928 21 N -0.899 5.899 22 Si 0.907 3.093 23 H -0.285 1.285 24 H -0.274 1.274 25 H -0.274 1.274 26 C 0.078 3.922 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.391 0.609 41 H 0.273 0.727 42 H 0.080 0.920 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.450 15.809 -6.233 18.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.218 6.218 3 C 0.131 3.869 4 C -0.264 4.264 5 C -0.065 4.065 6 C -0.265 4.265 7 C 0.130 3.870 8 O -0.221 6.221 9 C -0.066 4.066 10 C -0.124 4.124 11 C -0.118 4.118 12 C 0.328 3.672 13 O -0.441 6.441 14 N -0.368 5.368 15 C -0.010 4.010 16 C 0.197 3.803 17 O -0.385 6.385 18 C -0.574 4.574 19 H 0.088 0.912 20 C -0.130 4.130 21 N -0.539 5.539 22 Si 0.734 3.266 23 H -0.210 1.210 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.045 4.045 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.247 0.753 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.793 16.279 -5.522 18.484 hybrid contribution 0.699 -0.510 -0.378 0.944 sum -6.094 15.769 -5.901 17.906 Atomic orbital electron populations 1.23072 0.78291 1.04114 1.01104 1.86127 1.21351 1.26403 1.87917 1.18393 0.90821 0.84438 0.93203 1.21045 0.99879 0.92097 1.13371 1.20594 0.93639 0.96898 0.95328 1.21021 0.94834 0.97073 1.13536 1.18361 0.82376 0.92716 0.93562 1.86092 1.17271 1.30612 1.88126 1.23056 0.99175 0.83145 1.01202 1.17809 0.90358 0.92864 1.11354 1.20167 1.00653 0.95220 0.95808 1.19973 0.78026 0.78578 0.90607 1.90606 1.53508 1.53416 1.46605 1.50111 1.50864 1.23985 1.11879 1.23397 0.98174 0.89833 0.89602 1.19830 0.84505 0.87149 0.88805 1.86064 1.36305 1.43889 1.72218 1.21498 1.06090 1.06852 1.23000 0.91177 1.25060 0.97041 0.97147 0.93756 1.69321 1.35545 1.24373 1.24669 0.86400 0.82323 0.79357 0.78474 1.21046 1.19930 1.19913 1.24263 0.95959 0.86162 0.98139 0.92612 0.92740 0.88072 0.85435 0.85733 0.85492 0.92718 0.92605 0.88223 0.88353 0.88132 0.91416 0.89952 0.75311 0.91667 0.90193 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -4.89 9.53 -19.40 -0.19 -5.07 16 3 C 0.18 2.86 6.66 -39.24 -0.26 2.60 16 4 C -0.25 -3.20 9.04 -39.40 -0.36 -3.55 16 5 C -0.05 -0.55 10.04 -39.62 -0.40 -0.95 16 6 C -0.25 -3.14 9.04 -39.41 -0.36 -3.50 16 7 C 0.18 2.76 6.66 -39.24 -0.26 2.50 16 8 O -0.31 -4.62 9.54 -19.43 -0.19 -4.80 16 9 C 0.03 0.29 9.81 101.05 0.99 1.28 16 10 C -0.12 -2.13 4.40 -104.33 -0.46 -2.59 16 11 C -0.08 -1.46 5.14 -29.04 -0.15 -1.61 16 12 C 0.54 12.08 8.05 -10.99 -0.09 11.99 16 13 O -0.56 -14.13 16.76 5.55 0.09 -14.04 16 14 N -0.63 -14.43 3.61 -178.32 -0.64 -15.07 16 15 C 0.11 2.60 8.23 -2.97 -0.02 2.57 16 16 C 0.24 5.92 1.44 -90.86 -0.13 5.79 16 17 O -0.57 -15.18 13.48 -35.23 -0.48 -15.66 16 18 C -0.54 -13.73 8.62 -34.44 -0.30 -14.03 16 19 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 20 C 0.07 1.82 5.40 -17.82 -0.10 1.73 16 21 N -0.90 -23.02 11.09 55.43 0.61 -22.40 16 22 Si 0.91 19.68 29.54 -169.99 -5.02 14.65 16 23 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 C 0.08 1.74 8.00 -2.99 -0.02 1.72 16 27 H 0.06 0.55 7.65 -51.92 -0.40 0.16 16 28 H 0.05 0.46 7.67 -51.93 -0.40 0.07 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.13 1.31 6.29 -52.49 -0.33 0.98 16 31 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.13 1.26 6.29 -52.49 -0.33 0.93 16 33 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 34 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 1.68 7.53 -51.93 -0.39 1.29 16 37 H 0.10 1.81 7.52 -51.93 -0.39 1.42 16 38 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 39 H 0.08 1.76 8.09 -51.93 -0.42 1.34 16 40 H 0.39 10.39 6.46 45.56 0.29 10.68 16 41 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 42 H 0.08 1.71 8.09 -51.93 -0.42 1.29 16 43 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -32.24 362.86 -6.49 -38.73 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -5.24 Total: 12.94 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -0.92 Total: 5.25 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: -0.03 Total: -37.47 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -0.75 Total: -39.57 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.24 -6.49 -38.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186849093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.099 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds