Wall clock time and date at job start Fri Apr 10 2020 14:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35893 * 116.99726 * 2 1 4 4 C 1.38769 * 120.03157 * 0.28087 * 3 2 1 5 5 C 1.38187 * 120.05606 * 180.27366 * 4 3 2 6 6 C 1.38176 * 120.10539 * 359.72088 * 5 4 3 7 7 C 1.38775 * 120.05410 * 0.02562 * 6 5 4 8 8 O 1.35903 * 120.02448 * 180.02562 * 7 6 5 9 9 C 1.42904 * 116.99756 * 359.97438 * 8 7 6 10 10 C 1.38631 * 119.94933 * 359.97438 * 7 6 5 11 11 C 1.50702 * 120.05551 * 180.02562 * 10 7 6 12 12 C 1.50696 * 109.47060 * 90.00102 * 11 10 7 13 13 O 1.21284 * 119.99855 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00197 * 179.97438 * 12 11 10 15 15 C 1.47581 * 134.49354 * 180.02562 * 14 12 11 16 16 C 1.53945 * 86.11895 * 155.35947 * 15 14 12 17 17 O 1.42904 * 113.73986 * 269.15696 * 16 15 14 18 18 C 1.50694 * 113.74220 * 137.95139 * 16 15 14 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 16 15 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 16 15 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.47582 * 134.48982 * 359.97438 * 14 12 11 27 27 H 1.09009 * 109.46878 * 299.99489 * 1 2 3 28 28 H 1.08996 * 109.47708 * 59.99487 * 1 2 3 29 29 H 1.09001 * 109.47229 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.97432 * 359.97438 * 4 3 2 31 31 H 1.07991 * 119.94496 * 179.74950 * 5 4 3 32 32 H 1.07993 * 119.97021 * 179.97438 * 6 5 4 33 33 H 1.08995 * 109.47273 * 299.99600 * 9 8 7 34 34 H 1.08996 * 109.47265 * 60.00461 * 9 8 7 35 35 H 1.08999 * 109.46558 * 180.02562 * 9 8 7 36 36 H 1.08994 * 109.46986 * 330.00203 * 11 10 7 37 37 H 1.09001 * 109.47133 * 210.00089 * 11 10 7 38 38 H 1.09001 * 113.77016 * 41.05438 * 15 14 12 39 39 H 1.09005 * 113.86980 * 269.67513 * 15 14 12 40 40 H 0.96699 * 113.99284 * 178.07513 * 17 16 15 41 41 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 42 42 H 1.09002 * 113.76615 * 90.34214 * 26 14 12 43 43 H 1.08991 * 113.77327 * 318.94082 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2907 2.3750 0.0059 5 6 1.9174 3.6066 0.0002 6 6 3.2971 3.6821 -0.0056 7 6 4.0567 2.5207 -0.0062 8 8 5.4137 2.5957 -0.0113 9 6 5.9911 3.9029 -0.0165 10 6 3.4303 1.2840 -0.0005 11 6 4.2529 0.0213 -0.0005 12 6 4.5328 -0.3959 1.4202 13 8 4.1059 0.2666 2.3421 14 7 5.2566 -1.5058 1.6665 15 6 5.7110 -2.1938 2.8905 16 6 5.7710 -3.4669 2.0270 17 8 4.5574 -4.2215 2.0296 18 6 6.9907 -4.3148 2.2803 19 1 7.7208 -4.0055 3.0136 20 6 7.1747 -5.4857 1.5758 21 7 6.2854 -5.8627 0.6832 22 14 8.6870 -6.5365 1.8892 23 1 8.6487 -7.7335 1.0111 24 1 9.9089 -5.7454 1.5956 25 1 8.7052 -6.9663 3.3105 26 6 5.9123 -2.5218 0.8204 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.2122 2.3186 0.0101 31 1 1.3279 4.5114 0.0007 32 1 3.7846 4.6457 -0.0105 33 1 5.6648 4.4408 -0.9065 34 1 5.6713 4.4449 0.8734 35 1 7.0779 3.8199 -0.0207 36 1 5.1948 0.2014 -0.5186 37 1 3.7035 -0.7702 -0.5101 38 1 4.9584 -2.2321 3.6781 39 1 6.6847 -1.8596 3.2487 40 1 4.5812 -5.0063 1.4651 41 1 6.4151 -6.6863 0.1873 42 1 6.9455 -2.2830 0.5681 43 1 5.3205 -2.8220 -0.0441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186849093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:44 Heat of formation + Delta-G solvation = -114.863474 kcal Electronic energy + Delta-G solvation = -27600.175498 eV Core-core repulsion = 23611.985777 eV Total energy + Delta-G solvation = -3988.189720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.77640 -40.94169 -39.97493 -38.96996 -37.33285 -35.78808 -34.12142 -33.96796 -30.75399 -30.49437 -28.77093 -28.69305 -27.50549 -26.98751 -26.60796 -23.05146 -22.75178 -21.68850 -19.98527 -19.46661 -19.18311 -18.00133 -17.92540 -17.31186 -17.30735 -16.89685 -16.74656 -16.42016 -16.34838 -16.16435 -15.84243 -15.73348 -15.00501 -14.57854 -14.26414 -14.12239 -14.02355 -13.79640 -13.42196 -13.38668 -13.30123 -13.22516 -12.83046 -12.74024 -12.62448 -12.38671 -12.31773 -12.23545 -12.20098 -11.69969 -11.64515 -11.38867 -10.94110 -10.62198 -10.24765 -9.54519 -9.33808 -9.09357 -8.24849 -6.42417 0.31495 0.45226 1.49274 1.50843 1.58534 1.70584 1.99219 2.01972 2.42171 2.74584 2.76163 2.97396 3.60665 3.65409 3.87803 3.92123 4.02816 4.11021 4.19536 4.24785 4.37845 4.39783 4.40371 4.42350 4.46704 4.49704 4.53114 4.61723 4.69871 4.71652 4.79789 4.87723 4.92160 5.04240 5.24708 5.25472 5.31977 5.44115 5.56478 5.73792 5.94199 6.37646 6.45443 6.62637 6.88317 7.20978 7.31485 7.48580 8.81088 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018197 B = 0.003401 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.314383 B = 8229.888244 C = 9204.868132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.158 3.842 4 C -0.248 4.248 5 C -0.038 4.038 6 C -0.247 4.247 7 C 0.161 3.839 8 O -0.336 6.336 9 C 0.020 3.980 10 C -0.165 4.165 11 C -0.065 4.065 12 C 0.533 3.467 13 O -0.593 6.593 14 N -0.638 5.638 15 C 0.111 3.889 16 C 0.222 3.778 17 O -0.587 6.587 18 C -0.558 4.558 19 H 0.072 0.928 20 C 0.033 3.967 21 N -0.916 5.916 22 Si 0.971 3.029 23 H -0.282 1.282 24 H -0.267 1.267 25 H -0.275 1.275 26 C 0.092 3.908 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.155 0.845 31 H 0.166 0.834 32 H 0.157 0.843 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.100 0.900 40 H 0.388 0.612 41 H 0.276 0.724 42 H 0.092 0.908 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.412 17.544 -6.951 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.112 3.888 4 C -0.267 4.267 5 C -0.056 4.056 6 C -0.265 4.265 7 C 0.115 3.885 8 O -0.250 6.250 9 C -0.074 4.074 10 C -0.167 4.167 11 C -0.104 4.104 12 C 0.324 3.676 13 O -0.475 6.475 14 N -0.372 5.372 15 C -0.012 4.012 16 C 0.181 3.819 17 O -0.399 6.399 18 C -0.596 4.596 19 H 0.090 0.910 20 C -0.167 4.167 21 N -0.557 5.557 22 Si 0.796 3.204 23 H -0.207 1.207 24 H -0.192 1.192 25 H -0.200 1.200 26 C -0.031 4.031 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.128 0.872 30 H 0.172 0.828 31 H 0.184 0.816 32 H 0.175 0.825 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.118 0.882 40 H 0.243 0.757 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.757 18.027 -6.251 20.241 hybrid contribution 0.628 -0.994 -0.135 1.184 sum -6.129 17.032 -6.386 19.195 Atomic orbital electron populations 1.23356 0.76079 1.05330 1.02613 1.86068 1.23866 1.27196 1.88148 1.18696 0.90841 0.85437 0.93858 1.21414 1.01201 0.91543 1.12507 1.21131 0.93648 0.97929 0.92879 1.21416 0.95374 0.97334 1.12416 1.18611 0.82979 0.93096 0.93790 1.86043 1.17251 1.33547 1.88163 1.23372 0.99919 0.81577 1.02572 1.17996 0.91228 0.92897 1.14591 1.20029 1.01357 0.96233 0.92800 1.20728 0.76967 0.77835 0.92039 1.90563 1.54580 1.54347 1.47971 1.50198 1.51052 1.24278 1.11624 1.23425 0.98701 0.89583 0.89466 1.20085 0.83882 0.87547 0.90427 1.86049 1.37533 1.44009 1.72346 1.21708 1.06471 1.07769 1.23655 0.90960 1.25767 0.99605 0.97988 0.93372 1.69387 1.36686 1.24687 1.24928 0.85411 0.79201 0.77763 0.78062 1.20676 1.19174 1.20034 1.24104 0.96514 0.85255 0.97206 0.91911 0.90271 0.87182 0.82752 0.81644 0.82517 0.90475 0.91948 0.86771 0.87560 0.88494 0.92723 0.88169 0.75702 0.91378 0.88959 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.34 -11.01 9.53 -92.35 -0.88 -11.89 16 3 C 0.16 5.06 6.66 22.49 0.15 5.21 16 4 C -0.25 -5.96 9.04 22.38 0.20 -5.76 16 5 C -0.04 -0.78 10.04 22.24 0.22 -0.55 16 6 C -0.25 -5.71 9.04 22.38 0.20 -5.50 16 7 C 0.16 4.96 6.66 22.49 0.15 5.11 16 8 O -0.34 -9.92 9.54 -92.45 -0.88 -10.80 16 9 C 0.02 0.35 9.81 113.37 1.11 1.46 16 10 C -0.17 -5.84 4.40 -19.67 -0.09 -5.92 16 11 C -0.06 -2.47 5.14 29.10 0.15 -2.32 16 12 C 0.53 24.56 8.05 87.66 0.71 25.26 16 13 O -0.59 -30.69 16.76 -3.04 -0.05 -30.74 16 14 N -0.64 -29.62 3.61 -840.31 -3.03 -32.65 16 15 C 0.11 5.23 8.23 86.48 0.71 5.94 16 16 C 0.22 11.17 1.44 -10.89 -0.02 11.15 16 17 O -0.59 -31.95 13.48 -148.98 -2.01 -33.96 16 18 C -0.56 -28.62 8.62 25.60 0.22 -28.40 16 19 H 0.07 3.58 7.81 -2.91 -0.02 3.56 16 20 C 0.03 1.66 5.40 84.66 0.46 2.12 16 21 N -0.92 -46.94 11.09 21.45 0.24 -46.70 16 22 Si 0.97 39.83 29.54 68.60 2.03 41.86 16 23 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 25 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 26 C 0.09 4.17 8.00 86.47 0.69 4.86 16 27 H 0.06 1.18 7.65 -2.38 -0.02 1.16 16 28 H 0.08 1.21 7.67 -2.39 -0.02 1.19 16 29 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.15 2.71 6.29 -2.91 -0.02 2.69 16 31 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 32 H 0.16 2.54 6.29 -2.91 -0.02 2.52 16 33 H 0.08 1.00 7.66 -2.39 -0.02 0.98 16 34 H 0.06 1.01 7.66 -2.39 -0.02 0.99 16 35 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.11 3.75 7.53 -2.39 -0.02 3.74 16 37 H 0.10 3.67 7.52 -2.39 -0.02 3.65 16 38 H 0.05 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.10 4.31 8.09 -2.38 -0.02 4.29 16 40 H 0.39 21.14 6.46 -74.06 -0.48 20.67 16 41 H 0.28 13.39 8.31 -92.71 -0.77 12.62 16 42 H 0.09 3.93 8.09 -2.39 -0.02 3.91 16 43 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -70.61 362.86 1.96 -68.65 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: 0.56 Total: 42.07 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 5.99 Total: 14.18 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -2.79 Total: -79.35 kcal Atomic # 8 Polarization: -83.58 SS G_CDS: -3.82 Total: -87.40 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -70.61 1.96 -68.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186849093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.214 kcal (2) G-P(sol) polarization free energy of solvation -70.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds