Wall clock time and date at job start Fri Apr 10 2020 14:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35988 * 117.00054 * 2 1 4 4 C 1.38717 * 120.00078 * 359.72886 * 3 2 1 5 5 C 1.38109 * 120.00429 * 179.71889 * 4 3 2 6 6 C 1.38717 * 119.99516 * 0.55292 * 5 4 3 7 7 O 1.35980 * 120.00016 * 179.69922 * 6 5 4 8 8 C 1.42907 * 116.99939 * 0.02779 * 7 6 5 9 9 C 1.38681 * 120.00199 * 359.72809 * 6 5 4 10 10 C 1.50696 * 119.99962 * 179.97438 * 9 6 5 11 11 C 1.50704 * 109.47284 * 85.01814 * 10 9 6 12 12 O 1.21278 * 119.99910 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00349 * 179.97438 * 11 10 9 14 14 C 1.47068 * 136.05166 * 359.63805 * 13 11 10 15 15 C 1.53243 * 88.07680 * 207.19505 * 14 13 11 16 16 O 1.42908 * 114.01432 * 87.71916 * 15 14 13 17 17 C 1.50700 * 114.50507 * 220.45148 * 15 14 13 18 18 H 1.08004 * 119.99353 * 99.20819 * 17 15 14 19 19 C 1.37877 * 120.00366 * 279.20570 * 17 15 14 20 20 N 1.31512 * 120.00056 * 7.46948 * 19 17 15 21 21 Si 1.86805 * 119.99750 * 187.46725 * 19 17 15 22 22 H 1.48499 * 109.47073 * 84.99321 * 21 19 17 23 23 H 1.48502 * 109.46807 * 204.98763 * 21 19 17 24 24 H 1.48498 * 109.47339 * 324.99132 * 21 19 17 25 25 C 1.47060 * 136.06119 * 179.97438 * 13 11 10 26 26 C 1.38153 * 119.99678 * 359.97438 * 9 6 5 27 27 H 1.08997 * 109.47848 * 59.99505 * 1 2 3 28 28 H 1.09004 * 109.47179 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47151 * 299.99493 * 1 2 3 30 30 H 1.08006 * 119.99849 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.99933 * 180.25797 * 5 4 3 32 32 H 1.08999 * 109.46830 * 179.97438 * 8 7 6 33 33 H 1.09003 * 109.46724 * 299.99875 * 8 7 6 34 34 H 1.08999 * 109.47058 * 59.99418 * 8 7 6 35 35 H 1.09001 * 109.47393 * 205.01466 * 10 9 6 36 36 H 1.08998 * 109.47169 * 325.02125 * 10 9 6 37 37 H 1.09000 * 113.46841 * 321.92996 * 14 13 11 38 38 H 1.09003 * 113.46985 * 92.37472 * 14 13 11 39 39 H 0.96698 * 114.00269 * 80.58978 * 16 15 14 40 40 H 0.96998 * 119.99840 * 180.02562 * 20 19 17 41 41 H 1.08993 * 113.47449 * 267.63825 * 25 13 11 42 42 H 1.09005 * 113.46473 * 38.07349 * 25 13 11 43 43 H 1.07999 * 119.99412 * 180.02562 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2908 2.3750 -0.0057 5 6 1.9177 3.6056 0.0002 6 6 3.3030 3.6782 0.0002 7 8 3.9203 4.8898 -0.0002 8 6 3.0803 6.0460 0.0000 9 6 4.0583 2.5152 0.0000 10 6 5.5632 2.5941 -0.0006 11 6 6.0590 2.7437 1.4146 12 8 5.2682 2.7820 2.3333 13 7 7.3813 2.8340 1.6595 14 6 8.6109 2.8210 0.8528 15 6 9.3475 2.2694 2.0782 16 8 9.3158 0.8445 2.1832 17 6 10.7198 2.8524 2.2973 18 1 10.8613 3.6436 3.0188 19 6 11.7945 2.3758 1.5770 20 7 11.6019 1.5193 0.5978 21 14 13.5240 2.9467 1.9921 22 1 14.0711 2.1104 3.0905 23 1 14.3896 2.8160 0.7924 24 1 13.4864 4.3672 2.4231 25 6 8.2298 2.9829 2.8514 26 6 3.4311 1.2842 0.0003 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 0.2122 2.3185 -0.0097 31 1 1.3294 4.5113 0.0000 32 1 3.6982 6.9439 0.0001 33 1 2.4507 6.0377 -0.8898 34 1 2.4514 6.0379 0.8902 35 1 5.9747 1.6831 -0.4353 36 1 5.8817 3.4539 -0.5899 37 1 8.5750 2.1208 0.0181 38 1 8.9459 3.8148 0.5559 39 1 9.9651 0.3945 1.6255 40 1 12.3580 1.1837 0.0913 41 1 8.4622 4.0202 3.0921 42 1 7.8704 2.4202 3.7131 43 1 4.0194 0.3785 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193967239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:50 Heat of formation + Delta-G solvation = -89.105651 kcal Electronic energy + Delta-G solvation = -27075.661427 eV Core-core repulsion = 23088.588650 eV Total energy + Delta-G solvation = -3987.072777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.59708 -39.44474 -38.94922 -37.42844 -36.27389 -33.91853 -32.62504 -32.25697 -30.09446 -29.09814 -27.76009 -26.97397 -26.77271 -25.08134 -24.89504 -22.25605 -21.54142 -20.09234 -18.38247 -17.88163 -17.52412 -17.29767 -16.87884 -16.25878 -15.81350 -15.55148 -15.34527 -14.89672 -14.82118 -14.68597 -14.45156 -14.14923 -13.73288 -13.26016 -12.97063 -12.85821 -12.73881 -12.64048 -12.20142 -12.10231 -11.99029 -11.65447 -11.65143 -11.60178 -11.34155 -11.03410 -10.91312 -10.72656 -10.47670 -10.44700 -10.26023 -9.52329 -9.13626 -8.87662 -8.74776 -8.34278 -7.75496 -7.67405 -6.36081 -4.44596 1.23232 1.50499 3.18310 3.18682 3.25812 3.27757 3.33377 3.37864 3.55480 3.90215 4.22855 4.62621 4.68735 4.86771 4.91248 4.98208 4.99721 5.08530 5.09274 5.20563 5.26601 5.29608 5.40321 5.44439 5.55582 5.63130 5.80973 5.85022 5.98622 6.18381 6.24557 6.27260 6.30518 6.46019 6.61152 6.62860 6.72915 6.76471 7.11663 7.25603 7.48639 7.65551 7.87552 8.57665 8.63300 8.89563 9.25981 9.32792 10.71111 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020722 B = 0.002906 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.866617 B = 9634.280287 C =10434.025815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.090 3.910 4 C -0.172 4.172 5 C -0.171 4.171 6 C 0.110 3.890 7 O -0.310 6.310 8 C 0.030 3.970 9 C -0.047 4.047 10 C -0.089 4.089 11 C 0.543 3.457 12 O -0.558 6.558 13 N -0.638 5.638 14 C 0.078 3.922 15 C 0.238 3.762 16 O -0.567 6.567 17 C -0.536 4.536 18 H 0.071 0.929 19 C 0.074 3.926 20 N -0.893 5.893 21 Si 0.904 3.096 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.110 3.890 26 C -0.099 4.099 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.387 0.613 40 H 0.271 0.729 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.953 3.402 -6.087 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.046 3.954 4 C -0.191 4.191 5 C -0.190 4.190 6 C 0.064 3.936 7 O -0.224 6.224 8 C -0.066 4.066 9 C -0.048 4.048 10 C -0.128 4.128 11 C 0.332 3.668 12 O -0.437 6.437 13 N -0.372 5.372 14 C -0.045 4.045 15 C 0.197 3.803 16 O -0.377 6.377 17 C -0.574 4.574 18 H 0.089 0.911 19 C -0.130 4.130 20 N -0.532 5.532 21 Si 0.731 3.269 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.012 4.012 26 C -0.117 4.117 27 H 0.070 0.930 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.238 0.762 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.696 3.291 -5.376 19.730 hybrid contribution 0.802 0.510 -0.351 1.013 sum -17.894 3.800 -5.727 19.168 Atomic orbital electron populations 1.22993 0.78910 1.03660 1.01034 1.86081 1.20893 1.26764 1.89439 1.18758 0.92033 0.84111 1.00509 1.20915 0.99629 0.91693 1.06886 1.20896 0.93008 0.98264 1.06820 1.18630 0.90637 0.85230 0.99062 1.86118 1.35273 1.12093 1.88899 1.23008 0.95875 0.86816 1.00878 1.18473 0.94351 0.89956 1.02042 1.20404 0.91194 1.05167 0.96056 1.19751 0.80188 0.76514 0.90311 1.90638 1.54119 1.52463 1.46500 1.49736 1.03692 1.70388 1.13394 1.24068 0.80564 1.01088 0.98801 1.19521 0.91389 0.80092 0.89335 1.86091 1.62768 1.18735 1.70072 1.21356 0.91686 1.20860 1.23482 0.91069 1.25057 0.99883 0.94429 0.93596 1.69661 1.32243 1.31728 1.19560 0.86407 0.83046 0.79335 0.78068 1.20204 1.21074 1.19667 1.23231 0.87896 0.99970 0.90096 1.20108 0.91382 0.97410 1.02837 0.92956 0.88448 0.92892 0.85476 0.85335 0.88377 0.92996 0.92878 0.88069 0.87793 0.91616 0.90125 0.76159 0.91897 0.89783 0.91744 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.11 10.50 -19.70 -0.21 -4.31 16 3 C 0.09 1.27 6.69 -39.24 -0.26 1.01 16 4 C -0.17 -2.12 9.03 -39.45 -0.36 -2.47 16 5 C -0.17 -2.18 9.03 -39.45 -0.36 -2.54 16 6 C 0.11 1.68 6.66 -39.24 -0.26 1.42 16 7 O -0.31 -4.62 9.63 -19.68 -0.19 -4.81 16 8 C 0.03 0.29 9.81 101.05 0.99 1.28 16 9 C -0.05 -0.77 4.38 -104.49 -0.46 -1.23 16 10 C -0.09 -1.50 5.38 -29.03 -0.16 -1.66 16 11 C 0.54 11.53 8.07 -10.98 -0.09 11.45 16 12 O -0.56 -13.50 16.81 5.56 0.09 -13.40 16 13 N -0.64 -13.89 3.69 -185.38 -0.68 -14.58 16 14 C 0.08 1.69 7.83 -8.64 -0.07 1.62 16 15 C 0.24 5.72 1.40 -91.38 -0.13 5.59 16 16 O -0.57 -14.45 13.51 -35.23 -0.48 -14.92 16 17 C -0.54 -13.44 8.67 -34.44 -0.30 -13.74 16 18 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 19 C 0.07 1.83 5.33 -17.82 -0.10 1.73 16 20 N -0.89 -22.44 11.64 55.43 0.65 -21.80 16 21 Si 0.90 19.46 29.54 -169.99 -5.02 14.43 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 C 0.11 2.47 8.03 -8.51 -0.07 2.41 16 26 C -0.10 -1.53 9.62 -39.45 -0.38 -1.91 16 27 H 0.05 0.35 7.65 -51.93 -0.40 -0.04 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.39 7.67 -51.93 -0.40 0.00 16 30 H 0.13 1.17 6.29 -52.48 -0.33 0.84 16 31 H 0.13 1.27 6.29 -52.49 -0.33 0.94 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 34 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 35 H 0.10 1.56 8.05 -51.93 -0.42 1.14 16 36 H 0.10 1.64 7.68 -51.93 -0.40 1.24 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 39 H 0.39 9.76 7.10 45.56 0.32 10.09 16 40 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 41 H 0.08 1.74 8.10 -51.93 -0.42 1.32 16 42 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 365.40 15.07 5.51 5.51 Total: -1.00 -31.22 365.40 -6.57 -37.79 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -5.25 Total: 11.89 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -0.99 Total: 4.20 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.04 Total: -36.37 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.78 Total: -37.45 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.22 -6.57 -37.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193967239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.313 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds