Wall clock time and date at job start Fri Apr 10 2020 14:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45200 * 109.47083 * 2 1 4 4 C 1.34230 * 116.99837 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00097 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00241 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.46744 * 274.99925 * 6 4 3 8 8 O 1.42909 * 109.46898 * 34.99279 * 6 4 3 9 9 C 1.52994 * 109.47497 * 154.99621 * 6 4 3 10 10 N 1.46498 * 109.47105 * 180.02562 * 9 6 4 11 11 C 1.34778 * 120.00172 * 180.02562 * 10 9 6 12 12 O 1.21586 * 119.99833 * 359.97438 * 11 10 9 13 13 C 1.47643 * 120.00155 * 179.72423 * 11 10 9 14 14 C 1.40005 * 119.89386 * 359.97438 * 13 11 10 15 15 C 1.36321 * 120.10571 * 179.72204 * 14 13 11 16 16 C 1.40893 * 119.88887 * 0.55486 * 15 14 13 17 17 C 1.41110 * 120.10146 * 179.70140 * 16 15 14 18 18 H 1.07992 * 119.99739 * 204.65925 * 17 16 15 19 19 C 1.40225 * 120.00184 * 24.65544 * 17 16 15 20 20 N 1.30654 * 119.99982 * 17.87067 * 19 17 16 21 21 Si 1.86795 * 120.00136 * 197.87354 * 19 17 16 22 22 H 1.48493 * 109.47431 * 89.99724 * 21 19 17 23 23 H 1.48500 * 109.47270 * 210.00358 * 21 19 17 24 24 H 1.48501 * 109.46877 * 329.99630 * 21 19 17 25 25 C 1.40889 * 119.79347 * 359.72101 * 16 15 14 26 26 C 1.36317 * 119.88848 * 359.97438 * 25 16 15 27 27 H 1.08999 * 109.47389 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47049 * 299.99881 * 1 2 3 29 29 H 1.09001 * 109.47537 * 60.00056 * 1 2 3 30 30 H 1.08997 * 109.47381 * 239.99549 * 2 1 3 31 31 H 1.09001 * 109.47537 * 119.99944 * 2 1 3 32 32 H 1.08999 * 109.47398 * 299.99121 * 7 6 4 33 33 H 1.09005 * 109.47676 * 59.99887 * 7 6 4 34 34 H 1.09007 * 109.46999 * 179.97438 * 7 6 4 35 35 H 0.96706 * 113.99348 * 60.00358 * 8 6 4 36 36 H 1.08998 * 109.46890 * 60.00111 * 9 6 4 37 37 H 1.09003 * 109.46785 * 299.99956 * 9 6 4 38 38 H 0.96998 * 119.99955 * 359.97438 * 10 9 6 39 39 H 1.08002 * 119.95257 * 359.97438 * 14 13 11 40 40 H 1.08004 * 120.05694 * 180.27724 * 15 14 13 41 41 H 0.97000 * 119.99535 * 180.02562 * 20 19 17 42 42 H 1.07998 * 120.04869 * 179.97438 * 25 16 15 43 43 H 1.08004 * 119.94117 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 6 3.9990 3.4562 -1.4383 8 8 3.0832 3.7997 0.7716 9 6 5.3239 2.9092 0.6080 10 7 5.8836 4.2630 0.6079 11 6 7.1191 4.4816 1.1004 12 8 7.7688 3.5551 1.5451 13 6 7.6855 5.8450 1.0947 14 6 6.9376 6.9092 0.5768 15 6 7.4542 8.1707 0.5746 16 6 8.7475 8.4007 1.0840 17 6 9.2891 9.7037 1.0781 18 1 10.3600 9.8434 1.0790 19 6 8.4369 10.8172 1.0710 20 7 7.1841 10.6833 1.4169 21 14 9.0926 12.4921 0.5669 22 1 8.9274 12.6679 -0.8983 23 1 8.3393 13.5541 1.2810 24 1 10.5326 12.5858 0.9174 25 6 9.4986 7.3256 1.5988 26 6 8.9710 6.0686 1.6024 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 4.6379 2.7986 -2.0278 33 1 2.9993 3.4764 -1.8724 34 1 4.4153 4.4636 -1.4388 35 1 2.9878 3.5308 1.6956 36 1 5.9627 2.2515 0.0186 37 1 5.2681 2.5395 1.6319 38 1 5.3654 5.0021 0.2528 39 1 5.9482 6.7311 0.1820 40 1 6.8748 8.9918 0.1789 41 1 6.5945 11.4535 1.4116 42 1 10.4905 7.4971 1.9899 43 1 9.5461 5.2438 1.9965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345411957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:34 Heat of formation + Delta-G solvation = -162.637668 kcal Electronic energy + Delta-G solvation = -26388.208450 eV Core-core repulsion = 22397.947086 eV Total energy + Delta-G solvation = -3990.261365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.12894 -39.26495 -37.94468 -36.99888 -36.85981 -34.06638 -33.87803 -32.15211 -31.46697 -30.11854 -29.44808 -27.15533 -25.78430 -24.73194 -22.87152 -21.80705 -20.98658 -20.58859 -19.77293 -18.68769 -17.54183 -17.29053 -17.19026 -16.91017 -15.61171 -15.48046 -15.24723 -15.08171 -14.49462 -14.28832 -13.99991 -13.78468 -13.72186 -13.21868 -13.14085 -12.82485 -12.75477 -12.59822 -12.41883 -12.28951 -12.12401 -12.06672 -11.89637 -11.84049 -11.36952 -11.29525 -11.04172 -10.95260 -10.88794 -10.66000 -10.26687 -10.05195 -9.56776 -9.36518 -9.02742 -8.69328 -7.73039 -7.55626 -7.04551 -4.61324 1.76625 2.14607 2.21355 2.91231 2.95381 2.97802 3.03180 3.61236 3.73290 3.82782 3.86149 4.19959 4.37047 4.49363 4.54773 4.58777 4.60176 4.88113 5.24610 5.36759 5.38895 5.40588 5.53158 5.57861 5.60709 5.65558 5.82152 6.03086 6.06408 6.08567 6.31169 6.75846 6.80599 6.81987 7.02147 7.08042 7.12398 7.42384 7.43186 7.63567 7.77581 7.85274 8.06137 8.18717 8.39086 8.62180 8.74335 9.02710 9.87395 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024376 B = 0.002395 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.409363 B =11686.317067 C =12527.826360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.344 6.344 4 C 0.442 3.558 5 O -0.494 6.494 6 C 0.140 3.860 7 C -0.142 4.142 8 O -0.530 6.530 9 C 0.111 3.889 10 N -0.735 5.735 11 C 0.573 3.427 12 O -0.574 6.574 13 C -0.284 4.284 14 C -0.062 4.062 15 C -0.178 4.178 16 C 0.128 3.872 17 C -0.441 4.441 18 H 0.085 0.915 19 C 0.074 3.926 20 N -0.770 5.770 21 Si 0.914 3.086 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.239 4.239 26 C -0.021 4.021 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.386 0.614 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.402 0.598 39 H 0.089 0.911 40 H 0.121 0.879 41 H 0.287 0.713 42 H 0.098 0.902 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.248 -11.140 -4.386 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.261 6.261 4 C 0.283 3.717 5 O -0.381 6.381 6 C 0.097 3.903 7 C -0.199 4.199 8 O -0.337 6.337 9 C -0.014 4.014 10 N -0.390 5.390 11 C 0.368 3.632 12 O -0.455 6.455 13 C -0.288 4.288 14 C -0.081 4.081 15 C -0.197 4.197 16 C 0.125 3.875 17 C -0.469 4.469 18 H 0.103 0.897 19 C -0.148 4.148 20 N -0.394 5.394 21 Si 0.738 3.262 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.183 1.183 25 C -0.258 4.258 26 C -0.041 4.041 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.235 0.765 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.239 0.761 39 H 0.107 0.893 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.880 -11.672 -4.584 17.976 hybrid contribution -0.121 0.548 0.258 0.618 sum -13.001 -11.123 -4.326 17.649 Atomic orbital electron populations 1.21801 0.92370 1.02991 1.03736 1.23104 0.95623 0.80237 1.02713 1.86593 1.23891 1.32274 1.83319 1.24580 0.81181 0.93066 0.72906 1.90717 1.60437 1.42780 1.44161 1.21341 0.89686 0.83255 0.96017 1.21829 1.04050 1.03576 0.90482 1.86642 1.69046 1.51752 1.26212 1.21560 0.91318 0.86925 1.01584 1.45765 1.18275 1.08509 1.66495 1.18610 0.79490 0.89506 0.75584 1.90651 1.60477 1.45537 1.48867 1.18833 0.98592 0.90886 1.20535 1.20477 0.96669 0.93272 0.97671 1.20981 0.98021 0.95281 1.05433 1.17804 0.91392 0.92561 0.85761 1.19861 0.94991 0.90226 1.41828 0.89684 1.26110 0.94441 1.02149 0.92070 1.69748 1.05832 1.33528 1.30244 0.86197 0.80388 0.79832 0.79794 1.18922 1.20020 1.18291 1.20712 1.01343 0.93151 1.10602 1.20362 0.93181 0.96048 0.94483 0.90193 0.91327 0.91360 0.91136 0.91117 0.89945 0.90424 0.89313 0.76521 0.89588 0.91182 0.76075 0.89266 0.86156 0.90198 0.88370 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.29 37.16 0.38 -0.47 16 2 C 0.06 0.46 6.19 37.16 0.23 0.69 16 3 O -0.34 -3.63 9.97 -44.43 -0.44 -4.07 16 4 C 0.44 5.26 6.80 36.01 0.24 5.51 16 5 O -0.49 -7.08 15.84 -18.75 -0.30 -7.38 16 6 C 0.14 1.60 1.01 -91.77 -0.09 1.51 16 7 C -0.14 -1.45 8.65 37.16 0.32 -1.13 16 8 O -0.53 -5.74 12.52 -49.11 -0.61 -6.35 16 9 C 0.11 1.59 4.31 -4.05 -0.02 1.58 16 10 N -0.73 -12.06 5.10 -61.32 -0.31 -12.38 16 11 C 0.57 12.10 7.76 -12.42 -0.10 12.00 16 12 O -0.57 -13.70 16.32 5.29 0.09 -13.61 16 13 C -0.28 -6.43 5.89 -104.73 -0.62 -7.04 16 14 C -0.06 -1.35 9.47 -39.61 -0.38 -1.72 16 15 C -0.18 -4.31 8.64 -39.27 -0.34 -4.65 16 16 C 0.13 3.23 5.58 -106.80 -0.60 2.64 16 17 C -0.44 -10.88 9.04 -37.75 -0.34 -11.22 16 18 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 19 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 20 N -0.77 -18.28 10.95 55.56 0.61 -17.67 16 21 Si 0.91 17.13 29.60 -169.99 -5.03 12.09 16 22 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 23 H -0.28 -5.05 7.11 56.52 0.40 -4.65 16 24 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 25 C -0.24 -5.74 9.73 -39.27 -0.38 -6.12 16 26 C -0.02 -0.51 9.52 -39.61 -0.38 -0.88 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 31 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.91 6.86 -51.93 -0.36 0.56 16 35 H 0.39 3.11 9.04 45.56 0.41 3.52 16 36 H 0.09 1.34 7.87 -51.93 -0.41 0.93 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.40 6.01 5.19 -40.82 -0.21 5.80 16 39 H 0.09 1.65 6.37 -52.49 -0.33 1.32 16 40 H 0.12 2.95 6.16 -52.48 -0.32 2.62 16 41 H 0.29 6.11 8.29 -40.82 -0.34 5.78 16 42 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 43 H 0.10 2.30 7.63 -52.48 -0.40 1.90 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -30.37 368.15 -7.58 -37.95 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -4.98 Total: 13.58 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -2.14 Total: -7.70 kcal Atomic # 7 Polarization: -30.34 SS G_CDS: 0.30 Total: -30.04 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -1.27 Total: -31.42 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.09 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.37 -7.58 -37.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345411957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.692 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds