Wall clock time and date at job start Fri Apr 10 2020 14:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47575 * 2 1 4 4 C 1.42896 * 113.99927 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.57815 * 29.84612 * 4 3 2 6 6 C 1.53097 * 109.59859 * 269.72134 * 4 3 2 7 7 O 1.42906 * 109.49112 * 182.57906 * 6 4 3 8 8 C 1.42912 * 114.09425 * 61.10964 * 7 6 4 9 9 C 1.53087 * 109.41654 * 298.84562 * 8 7 6 10 10 C 1.53175 * 109.16348 * 57.60769 * 9 8 7 11 11 H 1.08998 * 109.54422 * 62.97477 * 10 9 8 12 12 N 1.46501 * 109.54838 * 183.15068 * 10 9 8 13 13 S 1.65601 * 120.00164 * 264.82683 * 12 10 9 14 14 O 1.42096 * 104.27550 * 308.92655 * 13 12 10 15 15 O 1.42097 * 104.27967 * 181.06499 * 13 12 10 16 16 C 1.81409 * 104.44942 * 64.99540 * 13 12 10 17 17 C 1.52999 * 109.46814 * 180.02562 * 16 13 12 18 18 C 1.53006 * 109.46623 * 179.97438 * 17 16 13 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47574 * 89.99780 * 23 21 19 25 25 H 1.48500 * 109.47346 * 209.99892 * 23 21 19 26 26 H 1.48499 * 109.47067 * 329.99541 * 23 21 19 27 27 H 1.09000 * 109.47320 * 59.99552 * 1 2 3 28 28 H 1.08999 * 109.47598 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46853 * 300.00151 * 1 2 3 30 30 H 1.09008 * 109.46853 * 239.99849 * 2 1 3 31 31 H 1.09000 * 109.47320 * 120.00448 * 2 1 3 32 32 H 1.09004 * 109.48596 * 62.55397 * 6 4 3 33 33 H 1.09003 * 109.41836 * 302.56696 * 6 4 3 34 34 H 1.08996 * 109.47754 * 178.86464 * 8 7 6 35 35 H 1.08997 * 109.48408 * 58.83379 * 8 7 6 36 36 H 1.09000 * 109.52321 * 297.70568 * 9 8 7 37 37 H 1.08998 * 109.52242 * 177.51175 * 9 8 7 38 38 H 0.97001 * 120.00296 * 84.81867 * 12 10 9 39 39 H 1.09000 * 109.47067 * 60.00006 * 16 13 12 40 40 H 1.09001 * 109.46593 * 300.00012 * 16 13 12 41 41 H 1.09000 * 109.47486 * 60.00033 * 17 16 13 42 42 H 1.09001 * 109.47362 * 299.99310 * 17 16 13 43 43 H 1.08993 * 109.46955 * 300.00075 * 18 17 16 44 44 H 1.09000 * 109.47050 * 59.99904 * 18 17 16 45 45 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4599 -0.0006 5 1 3.8651 0.6008 -0.5120 6 6 3.9429 1.5072 1.4415 7 8 5.3614 1.6802 1.4384 8 6 5.8001 2.8910 0.8188 9 6 5.3648 2.8984 -0.6489 10 6 3.8423 2.7468 -0.7225 11 1 3.3671 3.6021 -0.2422 12 7 3.4238 2.6773 -2.1247 13 16 2.9239 4.0477 -2.9085 14 8 1.9451 4.6084 -2.0444 15 8 2.5799 3.5999 -4.2125 16 6 4.4002 5.1004 -2.9659 17 6 4.0629 6.4136 -3.6748 18 6 5.3079 7.3017 -3.7227 19 6 4.9758 8.5949 -4.4215 20 1 3.9768 8.7661 -4.7945 21 6 5.9475 9.5592 -4.5855 22 7 7.1642 9.3506 -4.1316 23 14 5.5358 11.1625 -5.4510 24 1 5.0678 12.1578 -4.4532 25 1 6.7472 11.6805 -6.1361 26 1 4.4651 10.9239 -6.4519 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.6916 0.5749 1.9473 33 1 3.4761 2.3418 1.9646 34 1 6.8867 2.9555 0.8759 35 1 5.3577 3.7438 1.3335 36 1 5.8391 2.0692 -1.1737 37 1 5.6598 3.8401 -1.1116 38 1 3.4396 1.8286 -2.5941 39 1 5.1922 4.5862 -3.5104 40 1 4.7354 5.3117 -1.9505 41 1 3.2710 6.9277 -3.1300 42 1 3.7275 6.2027 -4.6903 43 1 5.6429 7.5126 -2.7072 44 1 6.1000 6.7879 -4.2673 45 1 7.8477 10.0291 -4.2467 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352980708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:25 Heat of formation + Delta-G solvation = -184.388778 kcal Electronic energy + Delta-G solvation = -26216.091789 eV Core-core repulsion = 22360.331177 eV Total energy + Delta-G solvation = -3855.760612 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.22043 -37.77054 -36.89368 -35.81792 -35.63353 -34.70337 -32.23241 -31.92848 -31.18992 -29.67403 -27.84352 -24.73681 -24.01758 -23.59706 -22.88937 -20.96256 -20.67960 -19.21687 -17.85642 -17.31605 -16.90055 -16.80111 -16.51218 -15.73529 -15.65345 -15.55012 -15.26164 -14.81636 -14.49885 -14.42451 -14.11920 -13.65832 -13.61777 -12.78018 -12.67757 -12.55007 -12.31970 -12.09913 -12.03444 -11.90716 -11.89698 -11.79101 -11.70573 -11.58859 -11.41616 -11.24740 -10.93390 -10.86898 -10.74432 -10.43820 -10.36308 -9.97082 -9.78062 -9.56643 -9.34319 -9.09986 -8.42238 -6.07421 -4.10349 0.45105 2.78582 3.09198 3.29579 3.35776 3.39933 3.63379 3.94984 4.18344 4.36033 4.41352 4.47169 4.52990 4.61246 4.74432 4.77962 4.81796 4.89798 5.03742 5.07339 5.11692 5.18880 5.28694 5.29904 5.33658 5.39072 5.41374 5.54575 5.61098 5.68645 5.84453 5.87067 5.93401 6.24602 6.42225 6.65513 6.83635 6.86797 6.97206 7.54627 7.64561 7.90642 8.31196 8.95849 9.54523 11.03825 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.003048 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.267363 B = 9184.262955 C =10240.419889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.366 6.366 4 C 0.057 3.943 5 H 0.076 0.924 6 C 0.041 3.959 7 O -0.376 6.376 8 C 0.058 3.942 9 C -0.182 4.182 10 C 0.150 3.850 11 H 0.104 0.896 12 N -1.112 6.112 13 S 2.599 3.401 14 O -0.956 6.956 15 O -0.963 6.963 16 C -0.612 4.612 17 C -0.106 4.106 18 C 0.031 3.969 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.058 3.942 22 N -0.896 5.896 23 Si 0.894 3.106 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.273 1.273 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.413 0.587 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.472 -20.831 11.593 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.285 6.285 4 C -0.003 4.003 5 H 0.094 0.906 6 C -0.037 4.037 7 O -0.294 6.294 8 C -0.019 4.019 9 C -0.222 4.222 10 C 0.042 3.958 11 H 0.122 0.878 12 N -0.868 5.868 13 S 2.695 3.305 14 O -0.946 6.946 15 O -0.954 6.954 16 C -0.744 4.744 17 C -0.145 4.145 18 C -0.007 4.007 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.144 4.144 22 N -0.535 5.535 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.083 0.917 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.247 0.753 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.221 -20.420 11.445 24.221 hybrid contribution 0.641 0.545 -0.659 1.069 sum -5.580 -19.875 10.786 23.291 Atomic orbital electron populations 1.21751 0.93514 1.02204 1.03551 1.22574 0.95922 0.83724 1.00007 1.88043 1.19224 1.26319 1.94871 1.22955 0.82586 0.98266 0.96477 0.90644 1.23074 0.81791 1.03174 0.95648 1.87971 1.20886 1.41390 1.79184 1.22680 1.00997 0.87111 0.91152 1.22980 0.95191 1.05109 0.98887 1.20945 0.94020 0.99238 0.81590 0.87842 1.55661 1.85128 1.26033 1.19946 1.05385 0.77225 0.74355 0.73580 1.93582 1.55888 1.78511 1.66624 1.93575 1.82762 1.79699 1.39321 1.30685 1.20050 1.13179 1.10444 1.21506 1.03056 0.91246 0.98706 1.19056 0.90782 0.93247 0.97603 1.21255 0.96840 1.00979 1.37387 0.92370 1.25016 0.94980 0.98694 0.95673 1.69954 1.02300 1.34780 1.46430 0.86553 0.77907 0.83529 0.79814 1.20553 1.21173 1.19737 0.91560 0.91114 0.91713 0.93253 0.93377 0.88449 0.91654 0.87707 0.92147 0.89630 0.88835 0.75310 0.85198 0.85545 0.91542 0.91563 0.96136 0.96124 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.05 0.43 6.47 37.16 0.24 0.67 16 3 O -0.37 -3.91 9.92 -35.23 -0.35 -4.26 16 4 C 0.06 0.52 2.37 -26.59 -0.06 0.46 16 5 H 0.08 0.60 7.79 -51.93 -0.40 0.19 16 6 C 0.04 0.34 6.47 37.21 0.24 0.58 16 7 O -0.38 -3.51 10.77 -35.23 -0.38 -3.89 16 8 C 0.06 0.47 6.84 37.20 0.25 0.73 16 9 C -0.18 -1.55 5.70 -26.60 -0.15 -1.70 16 10 C 0.15 1.52 2.45 -67.75 -0.17 1.36 16 11 H 0.10 1.15 7.48 -51.93 -0.39 0.77 16 12 N -1.11 -12.30 5.29 -4.73 -0.03 -12.32 16 13 S 2.60 38.80 5.44 -107.50 -0.58 38.22 16 14 O -0.96 -17.31 17.39 -57.54 -1.00 -18.31 16 15 O -0.96 -17.19 18.08 -57.54 -1.04 -18.23 16 16 C -0.61 -9.18 5.31 37.16 0.20 -8.98 16 17 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 18 C 0.03 0.78 4.97 -27.88 -0.14 0.65 16 19 C -0.53 -14.73 9.11 -34.44 -0.31 -15.05 16 20 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 23 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.05 0.35 8.09 -51.92 -0.42 -0.07 16 31 H 0.05 0.30 7.97 -51.93 -0.41 -0.11 16 32 H 0.10 0.67 7.97 -51.93 -0.41 0.26 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.79 5.88 -51.93 -0.31 0.48 16 38 H 0.41 3.80 8.80 -34.47 -0.30 3.50 16 39 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 40 H 0.13 1.64 6.74 -51.92 -0.35 1.29 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -35.76 376.11 -9.36 -45.12 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -7.61 Total: -0.10 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 0.25 Total: -22.76 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.71 Total: -37.95 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -2.77 Total: -44.69 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 38.80 SS G_CDS: -0.58 Total: 38.22 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.76 -9.36 -45.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352980708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.267 kcal (2) G-P(sol) polarization free energy of solvation -35.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds