Wall clock time and date at job start Fri Apr 10 2020 14:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47575 * 2 1 4 4 C 1.42896 * 113.99927 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.57815 * 29.84612 * 4 3 2 6 6 C 1.53097 * 109.59859 * 269.72134 * 4 3 2 7 7 O 1.42906 * 109.49112 * 182.57906 * 6 4 3 8 8 C 1.42912 * 114.09425 * 61.10964 * 7 6 4 9 9 C 1.53087 * 109.41654 * 298.84562 * 8 7 6 10 10 C 1.53175 * 109.16348 * 57.60769 * 9 8 7 11 11 H 1.08998 * 109.54422 * 62.97477 * 10 9 8 12 12 N 1.46501 * 109.54838 * 183.15068 * 10 9 8 13 13 S 1.65601 * 120.00164 * 264.82683 * 12 10 9 14 14 O 1.42096 * 104.27550 * 308.92655 * 13 12 10 15 15 O 1.42097 * 104.27967 * 181.06499 * 13 12 10 16 16 C 1.81409 * 104.44942 * 64.99540 * 13 12 10 17 17 C 1.52999 * 109.46814 * 180.02562 * 16 13 12 18 18 C 1.53006 * 109.46623 * 179.97438 * 17 16 13 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47574 * 89.99780 * 23 21 19 25 25 H 1.48500 * 109.47346 * 209.99892 * 23 21 19 26 26 H 1.48499 * 109.47067 * 329.99541 * 23 21 19 27 27 H 1.09000 * 109.47320 * 59.99552 * 1 2 3 28 28 H 1.08999 * 109.47598 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46853 * 300.00151 * 1 2 3 30 30 H 1.09008 * 109.46853 * 239.99849 * 2 1 3 31 31 H 1.09000 * 109.47320 * 120.00448 * 2 1 3 32 32 H 1.09004 * 109.48596 * 62.55397 * 6 4 3 33 33 H 1.09003 * 109.41836 * 302.56696 * 6 4 3 34 34 H 1.08996 * 109.47754 * 178.86464 * 8 7 6 35 35 H 1.08997 * 109.48408 * 58.83379 * 8 7 6 36 36 H 1.09000 * 109.52321 * 297.70568 * 9 8 7 37 37 H 1.08998 * 109.52242 * 177.51175 * 9 8 7 38 38 H 0.97001 * 120.00296 * 84.81867 * 12 10 9 39 39 H 1.09000 * 109.47067 * 60.00006 * 16 13 12 40 40 H 1.09001 * 109.46593 * 300.00012 * 16 13 12 41 41 H 1.09000 * 109.47486 * 60.00033 * 17 16 13 42 42 H 1.09001 * 109.47362 * 299.99310 * 17 16 13 43 43 H 1.08993 * 109.46955 * 300.00075 * 18 17 16 44 44 H 1.09000 * 109.47050 * 59.99904 * 18 17 16 45 45 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4599 -0.0006 5 1 3.8651 0.6008 -0.5120 6 6 3.9429 1.5072 1.4415 7 8 5.3614 1.6802 1.4384 8 6 5.8001 2.8910 0.8188 9 6 5.3648 2.8984 -0.6489 10 6 3.8423 2.7468 -0.7225 11 1 3.3671 3.6021 -0.2422 12 7 3.4238 2.6773 -2.1247 13 16 2.9239 4.0477 -2.9085 14 8 1.9451 4.6084 -2.0444 15 8 2.5799 3.5999 -4.2125 16 6 4.4002 5.1004 -2.9659 17 6 4.0629 6.4136 -3.6748 18 6 5.3079 7.3017 -3.7227 19 6 4.9758 8.5949 -4.4215 20 1 3.9768 8.7661 -4.7945 21 6 5.9475 9.5592 -4.5855 22 7 7.1642 9.3506 -4.1316 23 14 5.5358 11.1625 -5.4510 24 1 5.0678 12.1578 -4.4532 25 1 6.7472 11.6805 -6.1361 26 1 4.4651 10.9239 -6.4519 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.6916 0.5749 1.9473 33 1 3.4761 2.3418 1.9646 34 1 6.8867 2.9555 0.8759 35 1 5.3577 3.7438 1.3335 36 1 5.8391 2.0692 -1.1737 37 1 5.6598 3.8401 -1.1116 38 1 3.4396 1.8286 -2.5941 39 1 5.1922 4.5862 -3.5104 40 1 4.7354 5.3117 -1.9505 41 1 3.2710 6.9277 -3.1300 42 1 3.7275 6.2027 -4.6903 43 1 5.6429 7.5126 -2.7072 44 1 6.1000 6.7879 -4.2673 45 1 7.8477 10.0291 -4.2467 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352980708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:23 Heat of formation + Delta-G solvation = -212.049055 kcal Electronic energy + Delta-G solvation = -26217.291229 eV Core-core repulsion = 22360.331177 eV Total energy + Delta-G solvation = -3856.960052 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.91827 -38.44781 -38.21962 -37.09030 -36.56838 -36.45797 -34.18164 -32.55845 -31.97347 -30.35354 -29.66480 -25.72304 -25.41965 -24.48331 -23.53008 -22.39710 -21.68906 -20.39376 -18.85862 -18.62512 -18.18704 -17.66602 -17.48370 -17.11419 -16.74277 -16.47359 -16.26464 -15.99698 -15.82752 -15.36580 -15.17575 -14.52974 -14.37961 -14.30536 -14.04638 -13.55246 -13.42655 -13.24296 -13.21245 -13.13496 -13.12068 -12.99265 -12.76140 -12.71365 -12.61946 -12.50593 -12.25323 -12.13169 -12.03502 -11.75133 -11.45868 -11.37543 -11.13889 -10.99912 -10.57071 -10.49590 -10.20840 -8.22818 -6.33290 -0.78181 1.40331 1.40585 1.51987 1.70581 2.39721 2.44525 2.72619 3.01358 3.10921 3.18869 3.50164 3.68008 3.77197 3.83273 3.89430 3.94384 4.10259 4.12881 4.19109 4.31428 4.36506 4.45427 4.49775 4.60929 4.66671 4.70359 4.73048 4.83795 4.87438 4.92154 5.02119 5.05073 5.08168 5.20338 5.27874 5.45690 5.63776 5.79711 6.00314 6.05272 6.20229 6.33106 6.82098 7.35925 8.88547 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.003048 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.267363 B = 9184.262955 C =10240.419889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.047 3.953 3 O -0.392 6.392 4 C 0.059 3.941 5 H 0.091 0.909 6 C 0.042 3.958 7 O -0.385 6.385 8 C 0.054 3.946 9 C -0.179 4.179 10 C 0.142 3.858 11 H 0.090 0.910 12 N -1.097 6.097 13 S 2.624 3.376 14 O -0.989 6.989 15 O -0.993 6.993 16 C -0.608 4.608 17 C -0.106 4.106 18 C 0.033 3.967 19 C -0.553 4.553 20 H 0.058 0.942 21 C 0.004 3.996 22 N -0.928 5.928 23 Si 0.961 3.039 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.266 1.266 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.060 0.940 34 H 0.119 0.881 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.425 0.575 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.006 0.994 44 H 0.005 0.995 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.287 -21.847 11.948 25.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.029 4.029 3 O -0.312 6.312 4 C -0.001 4.001 5 H 0.109 0.891 6 C -0.035 4.035 7 O -0.304 6.304 8 C -0.023 4.023 9 C -0.219 4.219 10 C 0.034 3.966 11 H 0.109 0.891 12 N -0.856 5.856 13 S 2.720 3.280 14 O -0.979 6.979 15 O -0.983 6.983 16 C -0.739 4.739 17 C -0.146 4.146 18 C -0.005 4.005 19 C -0.591 4.591 20 H 0.077 0.923 21 C -0.194 4.194 22 N -0.568 5.568 23 Si 0.785 3.215 24 H -0.197 1.197 25 H -0.205 1.205 26 H -0.190 1.190 27 H 0.067 0.933 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.132 0.868 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.261 0.739 39 H 0.170 0.830 40 H 0.165 0.835 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.024 0.976 44 H 0.023 0.977 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.045 -21.447 11.795 25.212 hybrid contribution 0.589 0.798 -0.716 1.223 sum -5.456 -20.649 11.079 24.061 Atomic orbital electron populations 1.21790 0.93587 1.03320 1.02404 1.22777 0.95972 0.82818 1.01365 1.88018 1.20018 1.28087 1.95061 1.22991 0.82193 0.98002 0.96937 0.89123 1.23117 0.81355 1.03877 0.95197 1.87961 1.21298 1.41804 1.79300 1.22798 1.01866 0.86904 0.90753 1.22972 0.93793 1.05671 0.99436 1.21160 0.95172 0.99691 0.80591 0.89144 1.55231 1.84877 1.25166 1.20338 1.04383 0.76579 0.74488 0.72575 1.93541 1.57423 1.79613 1.67323 1.93530 1.83363 1.80305 1.41096 1.30619 1.20968 1.10893 1.11459 1.21320 1.00758 0.92980 0.99512 1.18945 0.92390 0.93173 0.96010 1.21742 0.97032 1.02554 1.37780 0.92350 1.25894 0.94848 1.02290 0.96364 1.70058 1.03215 1.36064 1.47483 0.85511 0.77934 0.79190 0.78840 1.19736 1.20513 1.19040 0.93306 0.88902 0.92224 0.92359 0.91464 0.86815 0.92126 0.86353 0.92017 0.88382 0.88773 0.73893 0.83039 0.83464 0.91677 0.91708 0.97581 0.97679 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.28 71.98 0.74 -1.39 16 2 C 0.05 0.65 6.47 71.98 0.47 1.12 16 3 O -0.39 -7.90 9.92 -148.98 -1.48 -9.38 16 4 C 0.06 0.97 2.37 30.69 0.07 1.04 16 5 H 0.09 1.20 7.79 -2.39 -0.02 1.18 16 6 C 0.04 0.63 6.47 72.01 0.47 1.10 16 7 O -0.38 -6.42 10.77 -148.98 -1.60 -8.02 16 8 C 0.05 0.78 6.84 72.01 0.49 1.27 16 9 C -0.18 -2.69 5.70 30.68 0.17 -2.52 16 10 C 0.14 2.67 2.45 45.11 0.11 2.78 16 11 H 0.09 1.96 7.48 -2.39 -0.02 1.94 16 12 N -1.10 -22.73 5.29 -168.89 -0.89 -23.62 16 13 S 2.62 76.66 5.44 -56.49 -0.31 76.35 16 14 O -0.99 -35.76 17.39 -127.65 -2.22 -37.98 16 15 O -0.99 -34.90 18.08 -127.65 -2.31 -37.20 16 16 C -0.61 -17.66 5.31 71.98 0.38 -17.28 16 17 C -0.11 -4.27 5.16 30.60 0.16 -4.11 16 18 C 0.03 1.67 4.97 29.85 0.15 1.82 16 19 C -0.55 -31.24 9.11 25.60 0.23 -31.01 16 20 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 21 C 0.00 0.25 5.46 84.65 0.46 0.71 16 22 N -0.93 -54.99 13.29 21.45 0.28 -54.70 16 23 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.06 0.70 8.09 -2.38 -0.02 0.68 16 31 H 0.07 0.68 7.97 -2.39 -0.02 0.66 16 32 H 0.11 1.30 7.97 -2.39 -0.02 1.28 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.40 5.88 -2.39 -0.01 1.39 16 38 H 0.42 7.05 8.80 -96.75 -0.85 6.20 16 39 H 0.15 3.74 8.14 -2.39 -0.02 3.72 16 40 H 0.15 3.64 6.74 -2.39 -0.02 3.63 16 41 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -76.40 376.11 -2.47 -78.88 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.12 Total: 16.14 kcal Atomic # 6 Polarization: -50.38 SS G_CDS: 3.91 Total: -46.47 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -0.61 Total: -78.33 kcal Atomic # 8 Polarization: -84.98 SS G_CDS: -7.61 Total: -92.59 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 76.66 SS G_CDS: -0.31 Total: 76.35 kcal Total: -76.40 -2.47 -78.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352980708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.172 kcal (2) G-P(sol) polarization free energy of solvation -76.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds