Wall clock time and date at job start Fri Apr 10 2020 14:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42907 * 109.47095 * 2 1 4 4 C 1.42897 * 113.99799 * 179.97438 * 3 2 1 5 5 H 1.08993 * 112.91366 * 18.75167 * 4 3 2 6 6 C 1.53781 * 113.61351 * 247.49487 * 4 3 2 7 7 C 1.53790 * 87.08384 * 270.88719 * 6 4 3 8 8 H 1.08999 * 113.68603 * 89.12557 * 7 6 4 9 9 N 1.46494 * 113.61510 * 220.02252 * 7 6 4 10 10 S 1.65608 * 119.99583 * 242.49690 * 9 7 6 11 11 O 1.42102 * 104.27529 * 181.07038 * 10 9 7 12 12 O 1.42093 * 104.27575 * 308.92948 * 10 9 7 13 13 C 1.81397 * 104.44943 * 65.00070 * 10 9 7 14 14 C 1.52996 * 109.47172 * 179.97438 * 13 10 9 15 15 C 1.53005 * 109.47513 * 179.97438 * 14 13 10 16 16 C 1.50696 * 109.47104 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00183 * 0.02562 * 16 15 14 18 18 C 1.37887 * 119.99775 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99588 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00021 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47122 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47335 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47477 * 240.00228 * 20 18 16 24 24 C 1.53779 * 87.07895 * 334.57096 * 7 6 4 25 25 H 1.09009 * 113.61552 * 270.88018 * 24 7 6 26 26 O 1.42895 * 113.61640 * 140.06626 * 24 7 6 27 27 C 1.42898 * 114.00451 * 149.99865 * 26 24 7 28 28 H 1.08996 * 109.47476 * 299.99794 * 1 2 3 29 29 H 1.08999 * 109.47094 * 60.00099 * 1 2 3 30 30 H 1.09004 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47476 * 240.00206 * 2 1 3 32 32 H 1.08999 * 109.47094 * 119.99901 * 2 1 3 33 33 H 1.09003 * 113.61334 * 156.34480 * 6 4 3 34 34 H 1.08996 * 113.61628 * 25.43602 * 6 4 3 35 35 H 0.96995 * 120.00292 * 62.77153 * 9 7 6 36 36 H 1.09002 * 109.47515 * 299.99988 * 13 10 9 37 37 H 1.08999 * 109.47173 * 59.99866 * 13 10 9 38 38 H 1.09002 * 109.47161 * 299.99950 * 14 13 10 39 39 H 1.08999 * 109.46961 * 60.00006 * 14 13 10 40 40 H 1.09002 * 109.46948 * 300.00181 * 15 14 13 41 41 H 1.08999 * 109.46920 * 60.00082 * 15 14 13 42 42 H 0.96994 * 119.99369 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.46770 * 300.00091 * 27 26 24 44 44 H 1.09000 * 109.47504 * 59.99911 * 27 26 24 45 45 H 1.08999 * 109.47792 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9290 0.5459 -0.3218 6 6 4.0018 2.0466 1.3025 7 6 3.8390 3.4329 0.6570 8 1 2.8644 3.8873 0.8354 9 7 4.9514 4.3444 0.9358 10 16 4.6828 5.7456 1.7768 11 8 5.9576 6.3711 1.8316 12 8 3.5947 6.3581 1.0986 13 6 4.1737 5.1922 3.4275 14 6 3.8940 6.4103 4.3100 15 6 3.4639 5.9437 5.7022 16 6 3.1878 7.1435 6.5712 17 1 3.3066 8.1393 6.1704 18 6 2.7823 6.9700 7.8776 19 7 2.6371 5.7572 8.3654 20 14 2.4407 8.4572 8.9549 21 1 2.6771 9.6984 8.1746 22 1 1.0286 8.4226 9.4132 23 1 3.3442 8.4330 10.1332 24 6 3.9487 2.7252 -0.7039 25 1 4.9724 2.6344 -1.0676 26 8 3.0530 3.2403 -1.6909 27 6 3.5402 3.1342 -3.0301 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.0399 1.7704 1.4874 34 1 3.3603 1.8908 2.1698 35 1 5.8445 4.1292 0.6245 36 1 3.2706 4.5874 3.3456 37 1 4.9706 4.5967 3.8729 38 1 4.7973 7.0148 4.3920 39 1 3.0972 7.0062 3.8648 40 1 2.5605 5.3394 5.6199 41 1 4.2604 5.3476 6.1477 42 1 2.3523 5.6352 9.2845 43 1 4.4738 3.6892 -3.1220 44 1 3.7156 2.0857 -3.2709 45 1 2.8031 3.5471 -3.7188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356258620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:05 Heat of formation + Delta-G solvation = -180.849924 kcal Electronic energy + Delta-G solvation = -25727.162022 eV Core-core repulsion = 21871.554866 eV Total energy + Delta-G solvation = -3855.607156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.04794 -38.21154 -38.08100 -37.12314 -37.01855 -36.47054 -34.16677 -33.68073 -31.48690 -29.66186 -27.92031 -25.69420 -25.43904 -25.11400 -23.69221 -22.43540 -21.13452 -20.42614 -18.84811 -18.56482 -18.30026 -17.79237 -17.17073 -16.75344 -16.68859 -16.54801 -16.43957 -15.95908 -15.79285 -15.33353 -14.62930 -14.49250 -14.20086 -14.04395 -13.97845 -13.75276 -13.52766 -13.27840 -13.23705 -13.15041 -13.05710 -12.98825 -12.77460 -12.62367 -12.59770 -12.36753 -12.24840 -12.13352 -12.00460 -11.75794 -11.54495 -11.36902 -11.10868 -10.67915 -10.57964 -10.48160 -10.05850 -8.22930 -6.33670 -0.75552 1.39424 1.40132 1.53514 1.74002 2.39760 2.54394 2.73978 3.03834 3.10589 3.24453 3.41787 3.53337 3.73256 3.75254 3.91340 4.01506 4.13408 4.24404 4.25016 4.38809 4.40927 4.48534 4.55467 4.57604 4.60804 4.65461 4.85290 4.88044 4.94448 4.97922 5.03014 5.05816 5.08800 5.23143 5.31844 5.45352 5.62916 5.79413 6.10978 6.19824 6.20671 6.49493 6.81860 7.35519 8.88792 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014148 B = 0.003034 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.586942 B = 9226.876340 C =10594.496536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.380 6.380 4 C 0.053 3.947 5 H 0.111 0.889 6 C -0.168 4.168 7 C 0.118 3.882 8 H 0.104 0.896 9 N -1.093 6.093 10 S 2.625 3.375 11 O -0.990 6.990 12 O -0.994 6.994 13 C -0.606 4.606 14 C -0.107 4.107 15 C 0.032 3.968 16 C -0.552 4.552 17 H 0.059 0.941 18 C 0.003 3.997 19 N -0.929 5.929 20 Si 0.963 3.037 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.275 1.275 24 C 0.058 3.942 25 H 0.132 0.868 26 O -0.390 6.390 27 C 0.022 3.978 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.429 0.571 36 H 0.140 0.860 37 H 0.151 0.849 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.002 0.998 41 H 0.005 0.995 42 H 0.265 0.735 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.032 -16.156 -21.949 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.299 6.299 4 C -0.007 4.007 5 H 0.129 0.871 6 C -0.207 4.207 7 C 0.010 3.990 8 H 0.122 0.878 9 N -0.853 5.853 10 S 2.721 3.279 11 O -0.980 6.980 12 O -0.984 6.984 13 C -0.737 4.737 14 C -0.146 4.146 15 C -0.006 4.006 16 C -0.590 4.590 17 H 0.077 0.923 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.788 3.212 21 H -0.189 1.189 22 H -0.202 1.202 23 H -0.201 1.201 24 C -0.002 4.002 25 H 0.149 0.851 26 O -0.309 6.309 27 C -0.074 4.074 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.147 0.853 34 H 0.105 0.895 35 H 0.266 0.734 36 H 0.159 0.841 37 H 0.169 0.831 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.020 0.980 41 H 0.024 0.976 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.613 -15.058 -22.081 26.969 hybrid contribution 0.160 -0.103 1.062 1.079 sum 3.773 -15.161 -21.018 26.189 Atomic orbital electron populations 1.21771 0.93777 1.03146 1.02333 1.22713 0.95808 0.82976 1.01008 1.87987 1.19746 1.27677 1.94498 1.23548 0.82456 0.98616 0.96037 0.87109 1.23949 1.04327 0.93991 0.98465 1.22827 0.89735 0.89978 0.96495 0.87782 1.55237 1.17720 1.40761 1.71558 1.04329 0.73155 0.73693 0.76745 1.93533 1.42056 1.74655 1.87769 1.93549 1.57747 1.75123 1.71950 1.30489 1.13786 1.09249 1.20143 1.21322 1.01536 0.94717 0.97061 1.18955 0.95443 0.95673 0.90562 1.21768 1.45822 0.93985 0.97441 0.92274 1.25932 0.95061 0.98993 0.99561 1.70076 1.48051 1.22747 1.16018 0.85426 0.77973 0.79376 0.78467 1.18865 1.20238 1.20096 1.24807 0.95187 0.92554 0.87646 0.85081 1.88046 1.44077 1.82498 1.16238 1.22987 1.00272 1.01360 0.82779 0.93000 0.92618 0.89135 0.92008 0.92329 0.85251 0.89530 0.73355 0.84144 0.83056 0.91406 0.91863 0.97959 0.97636 0.92622 0.93189 0.92461 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.05 0.74 6.50 71.98 0.47 1.20 16 3 O -0.38 -7.81 9.89 -134.66 -1.33 -9.14 16 4 C 0.05 0.79 4.32 31.12 0.13 0.92 16 5 H 0.11 0.95 7.87 -2.39 -0.02 0.93 16 6 C -0.17 -2.43 7.71 31.12 0.24 -2.19 16 7 C 0.12 2.40 4.08 45.52 0.19 2.59 16 8 H 0.10 2.72 7.76 -2.39 -0.02 2.71 16 9 N -1.09 -21.99 5.68 -167.20 -0.95 -22.94 16 10 S 2.63 77.91 5.43 -56.49 -0.31 77.60 16 11 O -0.99 -34.28 18.08 -127.65 -2.31 -36.59 16 12 O -0.99 -37.31 17.58 -127.65 -2.24 -39.56 16 13 C -0.61 -18.65 6.07 71.98 0.44 -18.22 16 14 C -0.11 -4.47 5.16 30.59 0.16 -4.31 16 15 C 0.03 1.67 4.97 29.85 0.15 1.82 16 16 C -0.55 -31.85 9.11 25.60 0.23 -31.61 16 17 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 18 C 0.00 0.16 5.46 84.66 0.46 0.62 16 19 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16 20 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 21 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 24 C 0.06 0.99 4.04 31.12 0.13 1.11 16 25 H 0.13 1.32 7.87 -2.38 -0.02 1.30 16 26 O -0.39 -8.85 10.34 -134.66 -1.39 -10.24 16 27 C 0.02 0.32 10.85 113.37 1.23 1.55 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.43 5.96 8.90 -96.75 -0.86 5.10 16 36 H 0.14 3.95 8.14 -2.39 -0.02 3.93 16 37 H 0.15 3.95 8.14 -2.39 -0.02 3.93 16 38 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 44 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -81.01 388.41 -1.56 -82.57 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.10 Total: 15.29 kcal Atomic # 6 Polarization: -52.55 SS G_CDS: 4.56 Total: -47.99 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -0.66 Total: -78.64 kcal Atomic # 8 Polarization: -88.25 SS G_CDS: -7.28 Total: -95.53 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 77.91 SS G_CDS: -0.31 Total: 77.60 kcal Total: -81.01 -1.56 -82.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356258620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.276 kcal (2) G-P(sol) polarization free energy of solvation -81.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds