Wall clock time and date at job start Fri Apr 10 2020 14:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45205 * 109.46839 * 2 1 4 4 C 1.34232 * 116.99579 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00431 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99669 * 180.02562 * 4 3 2 7 7 C 1.53003 * 109.46899 * 275.00469 * 6 4 3 8 8 O 1.42894 * 109.47340 * 35.00150 * 6 4 3 9 9 C 1.52998 * 109.47017 * 155.00732 * 6 4 3 10 10 N 1.46502 * 109.46902 * 180.02562 * 9 6 4 11 11 C 1.34780 * 119.99838 * 179.97438 * 10 9 6 12 12 O 1.21612 * 119.99875 * 359.97438 * 11 10 9 13 13 C 1.47428 * 120.00061 * 179.97438 * 11 10 9 14 14 C 1.39227 * 120.28080 * 5.54381 * 13 11 10 15 15 C 1.38218 * 120.09199 * 179.97438 * 14 13 11 16 16 C 1.38832 * 120.67552 * 0.02562 * 15 14 13 17 17 C 1.37593 * 120.56982 * 359.97438 * 16 15 14 18 18 C 1.40709 * 119.88221 * 359.97438 * 17 16 15 19 19 C 1.40893 * 120.32784 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99846 * 213.40469 * 19 18 17 21 21 C 1.40276 * 119.99858 * 33.39650 * 19 18 17 22 22 N 1.30621 * 120.00094 * 8.71484 * 21 19 18 23 23 Si 1.86800 * 119.99558 * 188.71235 * 21 19 18 24 24 H 1.48497 * 109.47437 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47109 * 120.00391 * 23 21 19 26 26 H 1.48506 * 109.46954 * 240.00185 * 23 21 19 27 27 H 1.09000 * 109.46695 * 299.99476 * 1 2 3 28 28 H 1.08994 * 109.47289 * 59.99201 * 1 2 3 29 29 H 1.08992 * 109.47011 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47020 * 240.01196 * 2 1 3 31 31 H 1.08992 * 109.47502 * 120.00303 * 2 1 3 32 32 H 1.09011 * 109.47009 * 299.99803 * 7 6 4 33 33 H 1.08999 * 109.47414 * 60.00207 * 7 6 4 34 34 H 1.09003 * 109.47059 * 180.02562 * 7 6 4 35 35 H 0.96703 * 114.00167 * 59.99621 * 8 6 4 36 36 H 1.08998 * 109.47306 * 59.99541 * 9 6 4 37 37 H 1.09001 * 109.46632 * 299.99691 * 9 6 4 38 38 H 0.97002 * 120.00039 * 359.97438 * 10 9 6 39 39 H 1.07997 * 119.95512 * 0.25158 * 14 13 11 40 40 H 1.08000 * 119.66208 * 180.02562 * 15 14 13 41 41 H 1.08005 * 119.71621 * 179.97438 * 16 15 14 42 42 H 1.08005 * 120.05922 * 180.02562 * 17 16 15 43 43 H 0.96997 * 119.99906 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5868 -0.0015 6 6 3.9207 2.9375 0.0000 7 6 3.9986 3.4577 -1.4368 8 8 3.0834 3.7990 0.7737 9 6 5.3241 2.9087 0.6088 10 7 5.8837 4.2626 0.6099 11 6 7.1189 4.4809 1.1031 12 8 7.7686 3.5539 1.5477 13 6 7.6823 5.8432 1.1037 14 6 6.9030 6.9254 0.7038 15 6 7.4351 8.2011 0.7064 16 6 8.7467 8.4206 1.1049 17 6 9.5414 7.3712 1.5054 18 6 9.0236 6.0629 1.5130 19 6 9.8292 4.9813 1.9208 20 1 9.7020 4.0109 1.4641 21 6 10.7966 5.1649 2.9199 22 7 10.8383 6.2849 3.5907 23 14 12.0252 3.8076 3.2909 24 1 11.7679 2.6493 2.3980 25 1 13.4033 4.3113 3.0627 26 1 11.8814 3.3833 4.7068 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 4.6374 2.8005 -2.0270 33 1 2.9989 3.4782 -1.8705 34 1 4.4157 4.4648 -1.4364 35 1 2.9881 3.5293 1.6974 36 1 5.9628 2.2516 0.0186 37 1 5.2685 2.5381 1.6323 38 1 5.3653 5.0020 0.2556 39 1 5.8800 6.7685 0.3955 40 1 6.8242 9.0356 0.3953 41 1 9.1468 9.4238 1.1005 42 1 10.5606 7.5515 1.8141 43 1 11.5070 6.4117 4.2818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601440771.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:51 Heat of formation + Delta-G solvation = -174.894533 kcal Electronic energy + Delta-G solvation = -26991.131434 eV Core-core repulsion = 23000.338572 eV Total energy + Delta-G solvation = -3990.792862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.07090 -40.74394 -39.11634 -38.29532 -37.79408 -35.76837 -35.13929 -32.89067 -32.42373 -31.74207 -31.15565 -28.07396 -27.14285 -25.82624 -24.00818 -23.32659 -22.63289 -21.60062 -21.17331 -19.70449 -19.34215 -18.33735 -18.07718 -17.80070 -17.13221 -16.58042 -16.47886 -16.33687 -15.87958 -15.51963 -15.40398 -15.09938 -14.80623 -14.77103 -14.49258 -13.93915 -13.76315 -13.65101 -13.55383 -13.37684 -13.27847 -12.99210 -12.94595 -12.85835 -12.76842 -12.51583 -12.48527 -12.31280 -11.98204 -11.88319 -11.59692 -11.47709 -11.19804 -11.13964 -10.30099 -10.04792 -9.37938 -9.22190 -8.66985 -6.35580 0.52698 0.83588 1.02543 1.27923 1.33201 1.47783 1.49383 2.21188 2.34143 2.44265 2.79045 2.92033 3.23127 3.48346 3.62032 3.75235 3.96913 4.03543 4.29117 4.30608 4.39803 4.42342 4.55801 4.61775 4.65986 4.70232 4.79645 4.90633 4.93876 5.03847 5.09441 5.12019 5.25802 5.33578 5.35874 5.52537 5.64079 5.84885 6.06987 6.13236 6.27910 6.36157 6.57104 6.65027 6.78822 6.92994 7.01133 7.62836 8.29951 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016888 B = 0.003149 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.552291 B = 8890.156996 C =10208.109616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 O -0.343 6.343 4 C 0.448 3.552 5 O -0.525 6.525 6 C 0.155 3.845 7 C -0.143 4.143 8 O -0.530 6.530 9 C 0.114 3.886 10 N -0.716 5.716 11 C 0.561 3.439 12 O -0.579 6.579 13 C -0.279 4.279 14 C -0.052 4.052 15 C -0.235 4.235 16 C -0.092 4.092 17 C -0.178 4.178 18 C 0.113 3.887 19 C -0.456 4.456 20 H 0.081 0.919 21 C 0.031 3.969 22 N -0.822 5.822 23 Si 0.978 3.022 24 H -0.271 1.271 25 H -0.254 1.254 26 H -0.267 1.267 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.398 0.602 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.411 0.589 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.120 0.880 42 H 0.101 0.899 43 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.548 -5.435 -7.213 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 O -0.259 6.259 4 C 0.290 3.710 5 O -0.414 6.414 6 C 0.112 3.888 7 C -0.200 4.200 8 O -0.338 6.338 9 C -0.012 4.012 10 N -0.372 5.372 11 C 0.355 3.645 12 O -0.460 6.460 13 C -0.284 4.284 14 C -0.070 4.070 15 C -0.254 4.254 16 C -0.110 4.110 17 C -0.197 4.197 18 C 0.109 3.891 19 C -0.485 4.485 20 H 0.099 0.901 21 C -0.184 4.184 22 N -0.448 5.448 23 Si 0.799 3.201 24 H -0.195 1.195 25 H -0.178 1.178 26 H -0.192 1.192 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.248 0.752 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.249 0.751 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.138 0.862 42 H 0.119 0.881 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.858 -5.990 -7.267 20.188 hybrid contribution 0.788 -0.886 0.968 1.531 sum -17.069 -6.876 -6.299 19.450 Atomic orbital electron populations 1.21818 0.90079 1.04414 1.03883 1.23404 0.97368 0.79089 1.02722 1.86583 1.22768 1.33755 1.82785 1.24612 0.81529 0.92817 0.72086 1.90718 1.61218 1.43793 1.45661 1.21084 0.87656 0.83398 0.96700 1.21893 1.05120 1.03620 0.89362 1.86600 1.68464 1.51505 1.27195 1.21537 0.93018 0.85502 1.01094 1.45525 1.16810 1.09496 1.65414 1.18472 0.80555 0.89019 0.76476 1.90675 1.60734 1.46189 1.48383 1.19741 0.95679 0.92349 1.20593 1.21065 0.98099 0.92082 0.95766 1.20814 0.96358 0.96759 1.11503 1.21197 0.94830 0.97899 0.97109 1.21320 0.99896 0.93047 1.05441 1.17876 0.90325 0.93490 0.87383 1.20180 1.13445 0.97832 1.17006 0.90085 1.26783 0.98115 0.98736 0.94743 1.69740 1.31410 1.26106 1.17569 0.85226 0.77878 0.78337 0.78652 1.19531 1.17796 1.19189 0.91210 0.91071 0.88159 0.91072 0.91355 0.89913 0.88747 0.88911 0.75178 0.91360 0.92281 0.75065 0.84873 0.84852 0.86244 0.88088 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 71.98 0.74 -0.65 16 2 C 0.05 0.75 6.19 71.98 0.45 1.19 16 3 O -0.34 -6.93 9.97 -46.49 -0.46 -7.40 16 4 C 0.45 10.74 6.80 71.24 0.48 11.22 16 5 O -0.52 -15.89 15.84 21.98 0.35 -15.54 16 6 C 0.16 3.46 1.01 -11.54 -0.01 3.45 16 7 C -0.14 -2.65 8.65 71.98 0.62 -2.03 16 8 O -0.53 -10.31 12.51 -135.70 -1.70 -12.01 16 9 C 0.11 3.46 4.31 86.38 0.37 3.83 16 10 N -0.72 -24.14 5.10 -466.36 -2.38 -26.51 16 11 C 0.56 26.11 7.72 86.66 0.67 26.78 16 12 O -0.58 -31.93 13.57 -4.07 -0.06 -31.99 16 13 C -0.28 -13.51 5.92 -19.70 -0.12 -13.63 16 14 C -0.05 -2.02 9.52 22.50 0.21 -1.81 16 15 C -0.24 -9.02 10.03 22.41 0.22 -8.80 16 16 C -0.09 -3.95 10.01 22.26 0.22 -3.72 16 17 C -0.18 -9.17 8.63 22.72 0.20 -8.97 16 18 C 0.11 6.25 5.52 -21.11 -0.12 6.14 16 19 C -0.46 -26.52 7.72 23.42 0.18 -26.34 16 20 H 0.08 4.99 5.86 -2.91 -0.02 4.97 16 21 C 0.03 1.67 5.27 85.37 0.45 2.12 16 22 N -0.82 -44.27 11.06 21.88 0.24 -44.02 16 23 Si 0.98 42.41 29.57 68.60 2.03 44.44 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 1.12 8.13 -2.38 -0.02 1.10 16 31 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 32 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 1.64 6.86 -2.39 -0.02 1.62 16 35 H 0.40 5.82 9.04 -74.06 -0.67 5.15 16 36 H 0.07 2.35 7.87 -2.39 -0.02 2.33 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.41 11.39 5.26 -92.71 -0.49 10.90 16 39 H 0.13 4.00 6.44 -2.91 -0.02 3.98 16 40 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 41 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 42 H 0.10 5.46 6.51 -2.91 -0.02 5.44 16 43 H 0.29 14.00 8.29 -92.71 -0.77 13.24 16 Total: -1.00 -73.19 363.89 2.51 -70.68 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: -0.10 Total: 33.57 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 4.58 Total: -11.22 kcal Atomic # 7 Polarization: -68.40 SS G_CDS: -2.14 Total: -70.54 kcal Atomic # 8 Polarization: -65.06 SS G_CDS: -1.87 Total: -66.93 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -73.19 2.51 -70.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440771.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.215 kcal (2) G-P(sol) polarization free energy of solvation -73.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds