Wall clock time and date at job start Fri Apr 10 2020 14:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35896 * 117.00225 * 2 1 4 4 C 1.38751 * 120.05351 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.94336 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05359 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.11078 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.96818 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47173 * 204.99867 * 8 7 6 10 10 O 1.42891 * 109.47459 * 325.00207 * 8 7 6 11 11 C 1.50702 * 109.47102 * 85.00188 * 8 7 6 12 12 O 1.21283 * 120.00262 * 245.00042 * 11 8 7 13 13 N 1.34777 * 119.99928 * 64.71947 * 11 8 7 14 14 C 1.47423 * 125.65109 * 359.97383 * 13 11 8 15 15 C 1.55123 * 104.72654 * 155.81318 * 14 13 11 16 16 C 1.55156 * 101.48498 * 37.29727 * 15 14 13 17 17 O 1.42901 * 110.72261 * 82.69670 * 16 15 14 18 18 C 1.50709 * 110.87197 * 205.90029 * 16 15 14 19 19 H 1.07995 * 120.00065 * 113.60940 * 18 16 15 20 20 C 1.37873 * 119.99417 * 293.60858 * 18 16 15 21 21 N 1.31506 * 120.00823 * 359.97438 * 20 18 16 22 22 Si 1.86804 * 119.99742 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47062 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47376 * 119.99720 * 22 20 18 25 25 H 1.48501 * 109.47356 * 240.00365 * 22 20 18 26 26 C 1.47025 * 125.65000 * 180.27553 * 13 11 8 27 27 C 1.38162 * 120.05898 * 0.23252 * 7 6 5 28 28 H 1.09005 * 109.47111 * 299.99839 * 1 2 3 29 29 H 1.09004 * 109.47305 * 59.99543 * 1 2 3 30 30 H 1.08998 * 109.47696 * 180.02562 * 1 2 3 31 31 H 1.08004 * 120.03270 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.97041 * 179.97438 * 5 4 3 33 33 H 1.07999 * 119.94001 * 179.97438 * 6 5 4 34 34 H 0.96700 * 114.00158 * 59.99926 * 10 8 7 35 35 H 1.09004 * 110.36802 * 274.74548 * 14 13 11 36 36 H 1.09004 * 110.36924 * 37.06499 * 14 13 11 37 37 H 1.09005 * 111.19378 * 279.19151 * 15 14 13 38 38 H 1.09000 * 110.90752 * 155.27359 * 15 14 13 39 39 H 0.96696 * 113.99872 * 66.47629 * 17 16 15 40 40 H 0.97003 * 120.00886 * 180.02562 * 21 20 18 41 41 H 1.09004 * 109.88256 * 300.44464 * 26 13 11 42 42 H 1.08998 * 109.87939 * 61.45228 * 26 13 11 43 43 H 1.07995 * 120.02777 * 179.74306 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9209 3.6047 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 4.0560 2.5170 -0.0032 8 6 5.5608 2.5980 -0.0055 9 1 5.9730 1.6877 -0.4408 10 8 5.9759 3.7259 -0.7784 11 6 6.0580 2.7482 1.4092 12 8 6.6252 3.7652 1.7479 13 7 5.8672 1.7545 2.2995 14 6 5.1909 0.4735 2.0256 15 6 5.7597 -0.5071 3.0845 16 6 5.8865 0.4168 4.3245 17 8 4.6337 0.5270 5.0031 18 6 6.9555 -0.0848 5.2608 19 1 7.8533 0.4951 5.4156 20 6 6.7873 -1.2842 5.9197 21 7 5.6939 -1.9902 5.7317 22 14 8.1121 -1.9057 7.0809 23 1 9.2339 -0.9333 7.1179 24 1 7.5436 -2.0584 8.4443 25 1 8.6124 -3.2198 6.6031 26 6 6.2936 1.7710 3.7064 27 6 3.4311 1.2847 -0.0081 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2128 2.3204 0.0005 32 1 1.3340 4.5113 0.0000 33 1 3.7923 4.6380 -0.0024 34 1 5.6451 4.5724 -0.4481 35 1 4.1127 0.5806 2.1449 36 1 5.4294 0.1258 1.0204 37 1 6.7340 -0.8915 2.7824 38 1 5.0616 -1.3223 3.2744 39 1 4.3327 -0.2972 5.4095 40 1 5.5753 -2.8338 6.1956 41 1 7.3750 1.8949 3.7646 42 1 5.7983 2.5859 4.2343 43 1 4.0206 0.3799 -0.0135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844015077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:01 Heat of formation + Delta-G solvation = -134.959546 kcal Electronic energy + Delta-G solvation = -28199.032166 eV Core-core repulsion = 24209.971015 eV Total energy + Delta-G solvation = -3989.061151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.67182 -39.60178 -38.02441 -37.26267 -35.89758 -34.44299 -32.17938 -31.92222 -30.47610 -29.73337 -28.46932 -27.57166 -26.77681 -24.84799 -22.93152 -22.39714 -21.47058 -19.93522 -19.14637 -18.39083 -17.52589 -17.06240 -16.57186 -16.17988 -15.98974 -15.85392 -15.59280 -15.01470 -14.68738 -14.43368 -14.23907 -13.82135 -13.71424 -13.31946 -12.97783 -12.92919 -12.56704 -12.31064 -12.12352 -11.98359 -11.87876 -11.56331 -11.45254 -11.37364 -11.25659 -11.11817 -10.93491 -10.77445 -10.50870 -10.47049 -10.15200 -9.60238 -9.37812 -8.81237 -8.68366 -8.32097 -8.23684 -8.05284 -6.32472 -4.39802 1.11333 1.34319 2.83905 3.14331 3.17261 3.26374 3.30549 3.39231 3.61999 4.24506 4.36731 4.49292 4.62787 4.78601 4.88128 4.91704 4.96478 4.99014 5.08610 5.14037 5.31028 5.37448 5.47781 5.53318 5.72629 5.81110 5.90332 5.99927 6.13622 6.17592 6.27210 6.38537 6.41656 6.56319 6.63589 6.85453 6.91732 7.26467 7.27036 7.30875 7.41562 7.70893 7.96639 8.00862 8.46323 8.63000 9.28856 9.42794 10.75384 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014162 B = 0.004257 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.594847 B = 6576.158166 C = 7984.579417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.131 3.869 4 C -0.205 4.205 5 C -0.077 4.077 6 C -0.142 4.142 7 C -0.076 4.076 8 C 0.139 3.861 9 H 0.132 0.868 10 O -0.530 6.530 11 C 0.499 3.501 12 O -0.546 6.546 13 N -0.597 5.597 14 C 0.092 3.908 15 C -0.139 4.139 16 C 0.249 3.751 17 O -0.586 6.586 18 C -0.535 4.535 19 H 0.066 0.934 20 C 0.073 3.927 21 N -0.898 5.898 22 Si 0.903 3.097 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.121 3.879 27 C -0.136 4.136 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.381 0.619 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.386 0.614 40 H 0.269 0.731 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.420 3.904 -12.785 16.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.086 3.914 4 C -0.224 4.224 5 C -0.095 4.095 6 C -0.161 4.161 7 C -0.076 4.076 8 C 0.076 3.924 9 H 0.149 0.851 10 O -0.336 6.336 11 C 0.285 3.715 12 O -0.425 6.425 13 N -0.330 5.330 14 C -0.030 4.030 15 C -0.177 4.177 16 C 0.209 3.791 17 O -0.397 6.397 18 C -0.573 4.573 19 H 0.084 0.916 20 C -0.130 4.130 21 N -0.538 5.538 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.001 4.001 27 C -0.155 4.155 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.231 0.769 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.238 0.762 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.766 4.309 -13.154 16.940 hybrid contribution -0.029 -0.583 1.223 1.355 sum -9.795 3.725 -11.931 15.880 Atomic orbital electron populations 1.23060 0.78389 1.04042 1.01229 1.86099 1.21358 1.26631 1.88555 1.18897 0.92074 0.84314 0.96136 1.21258 1.00044 0.92424 1.08625 1.20840 0.94173 0.97109 0.97417 1.20752 0.94000 0.97753 1.03568 1.19949 0.94934 0.93375 0.99386 1.20612 0.89779 0.92157 0.89859 0.85105 1.86596 1.76931 1.16866 1.53181 1.20781 0.80347 0.83174 0.87162 1.90681 1.43788 1.28779 1.79258 1.48648 1.55726 1.16789 1.11870 1.22925 0.97136 0.83821 0.99153 1.23396 1.00942 0.97877 0.95516 1.19422 0.83519 0.87587 0.88613 1.86098 1.39078 1.40583 1.73911 1.21587 1.04083 1.05452 1.26183 0.91620 1.24981 0.95972 0.95923 0.96096 1.69576 1.26296 1.14869 1.43013 0.86353 0.81536 0.78665 0.80386 1.19556 1.20734 1.20786 1.22135 0.99314 0.99809 0.78802 1.20423 0.91797 0.98137 1.05108 0.92532 0.92818 0.88144 0.85407 0.85563 0.85890 0.76908 0.91066 0.92148 0.91326 0.89524 0.76181 0.92116 0.90883 0.92034 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -3.89 10.50 -19.41 -0.20 -4.09 16 3 C 0.13 1.70 6.69 -39.22 -0.26 1.44 16 4 C -0.20 -2.31 9.04 -39.43 -0.36 -2.67 16 5 C -0.08 -0.86 10.04 -39.60 -0.40 -1.26 16 6 C -0.14 -1.77 9.32 -39.56 -0.37 -2.14 16 7 C -0.08 -1.04 4.72 -104.65 -0.49 -1.53 16 8 C 0.14 2.04 3.05 -29.03 -0.09 1.95 16 9 H 0.13 1.73 7.54 -51.93 -0.39 1.34 16 10 O -0.53 -7.58 12.79 -55.09 -0.70 -8.28 16 11 C 0.50 9.33 7.22 -10.98 -0.08 9.25 16 12 O -0.55 -11.80 16.65 -14.31 -0.24 -12.04 16 13 N -0.60 -11.75 3.32 -170.38 -0.57 -12.31 16 14 C 0.09 1.65 4.78 -2.41 -0.01 1.64 16 15 C -0.14 -2.95 5.69 -24.47 -0.14 -3.09 16 16 C 0.25 5.96 0.85 -89.93 -0.08 5.89 16 17 O -0.59 -14.78 13.09 -35.23 -0.46 -15.24 16 18 C -0.53 -13.87 8.22 -34.44 -0.28 -14.15 16 19 H 0.07 1.72 7.53 -52.49 -0.40 1.32 16 20 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 21 N -0.90 -22.81 10.71 55.43 0.59 -22.21 16 22 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 C 0.12 2.73 6.21 -3.06 -0.02 2.71 16 27 C -0.14 -1.85 6.95 -39.43 -0.27 -2.12 16 28 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 29 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.13 1.12 6.30 -52.48 -0.33 0.78 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.12 1.32 6.61 -52.49 -0.35 0.98 16 34 H 0.38 4.57 7.13 45.56 0.33 4.89 16 35 H 0.07 1.31 6.71 -51.93 -0.35 0.96 16 36 H 0.06 0.90 5.71 -51.93 -0.30 0.60 16 37 H 0.07 1.48 8.05 -51.93 -0.42 1.06 16 38 H 0.09 1.92 7.78 -51.93 -0.40 1.51 16 39 H 0.39 9.82 6.98 45.56 0.32 10.14 16 40 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 41 H 0.07 1.68 7.63 -51.93 -0.40 1.28 16 42 H 0.06 1.45 8.07 -51.93 -0.42 1.03 16 43 H 0.14 1.79 5.77 -52.49 -0.30 1.49 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -30.40 347.43 -7.50 -37.90 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -4.18 Total: 17.07 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.95 Total: -1.10 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.03 Total: -34.53 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -1.61 Total: -39.65 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.40 -7.50 -37.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.063 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds