Wall clock time and date at job start Fri Apr 10 2020 14:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99722 * 2 1 4 4 H 1.08997 * 109.57733 * 29.83373 * 3 2 1 5 5 C 1.53097 * 109.51790 * 269.68274 * 3 2 1 6 6 O 1.42903 * 109.41151 * 182.48482 * 5 3 2 7 7 C 1.42904 * 114.09767 * 61.15946 * 6 5 3 8 8 C 1.53085 * 109.41475 * 298.83681 * 7 6 5 9 9 C 1.53175 * 109.52527 * 149.99766 * 3 2 1 10 10 H 1.08994 * 109.54117 * 296.75019 * 9 3 2 11 11 N 1.46496 * 109.61431 * 56.97282 * 9 3 2 12 12 C 1.46503 * 120.00269 * 7.51219 * 11 9 3 13 13 S 1.65602 * 119.99849 * 187.51439 * 11 9 3 14 14 O 1.42106 * 104.27577 * 206.07093 * 13 11 9 15 15 O 1.42104 * 104.27788 * 333.92515 * 13 11 9 16 16 C 1.81396 * 104.45018 * 89.99902 * 13 11 9 17 17 C 1.53009 * 109.47225 * 180.02562 * 16 13 11 18 18 C 1.52993 * 109.47259 * 179.97438 * 17 16 13 19 19 C 1.50702 * 109.47102 * 180.02562 * 18 17 16 20 20 H 1.07991 * 119.99934 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99807 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00159 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00004 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46908 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47158 * 120.00075 * 23 21 19 26 26 H 1.48503 * 109.47106 * 240.00208 * 23 21 19 27 27 H 1.09001 * 109.48080 * 300.00495 * 1 2 3 28 28 H 1.09001 * 109.47224 * 60.00989 * 1 2 3 29 29 H 1.09002 * 109.46985 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.48318 * 62.50213 * 5 3 2 31 31 H 1.08994 * 109.48173 * 302.46650 * 5 3 2 32 32 H 1.09007 * 109.48123 * 178.85565 * 7 6 5 33 33 H 1.08998 * 109.48190 * 58.82393 * 7 6 5 34 34 H 1.08997 * 109.52541 * 297.70460 * 8 7 6 35 35 H 1.09001 * 109.57814 * 177.54461 * 8 7 6 36 36 H 1.08996 * 109.46935 * 92.61489 * 12 11 9 37 37 H 1.09000 * 109.47208 * 212.61269 * 12 11 9 38 38 H 1.09001 * 109.47016 * 332.60834 * 12 11 9 39 39 H 1.08993 * 109.47121 * 299.99954 * 16 13 11 40 40 H 1.09005 * 109.47408 * 60.00504 * 16 13 11 41 41 H 1.09006 * 109.46722 * 299.99913 * 17 16 13 42 42 H 1.09000 * 109.47248 * 59.99786 * 17 16 13 43 43 H 1.09002 * 109.47137 * 300.00144 * 18 17 16 44 44 H 1.09005 * 109.47550 * 59.99915 * 18 17 16 45 45 H 0.97002 * 120.00097 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 2.0015 0.5109 5 6 2.2254 1.7696 -1.4430 6 8 2.8595 3.0502 -1.4404 7 6 4.1470 3.0626 -0.8204 8 6 4.0088 2.6506 0.6475 9 6 3.3605 1.2648 0.7219 10 1 3.2079 0.9891 1.7653 11 7 4.2331 0.2802 0.0774 12 6 3.8172 -0.3600 -1.1729 13 16 5.6898 -0.1089 0.7622 14 8 6.4872 -0.5408 -0.3319 15 8 6.0420 1.0434 1.5155 16 6 5.3146 -1.4999 1.8645 17 6 6.5962 -1.9556 2.5651 18 6 6.2796 -3.1283 3.4953 19 6 7.5419 -3.5767 4.1858 20 1 8.4764 -3.0757 3.9812 21 6 7.5035 -4.6267 5.0786 22 7 6.3653 -5.2365 5.3280 23 14 9.0682 -5.1831 5.9340 24 1 10.2050 -4.3405 5.4834 25 1 8.9035 -5.0484 7.4037 26 1 9.3399 -6.6029 5.5943 27 1 -0.3635 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.2628 1.8415 -1.9492 31 1 2.8581 1.0518 -1.9651 32 1 4.5686 4.0662 -0.8781 33 1 4.8047 2.3617 -1.3343 34 1 3.3839 3.3737 1.1716 35 1 4.9945 2.6169 1.1117 36 1 4.2059 0.2073 -2.0185 37 1 4.2075 -1.3772 -1.2076 38 1 2.7286 -0.3868 -1.2228 39 1 4.5851 -1.1854 2.6109 40 1 4.9055 -2.3252 1.2818 41 1 7.3260 -2.2699 1.8189 42 1 7.0050 -1.1301 3.1479 43 1 5.5499 -2.8136 4.2414 44 1 5.8706 -3.9540 2.9129 45 1 6.3383 -5.9754 5.9559 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882743721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:40 Heat of formation + Delta-G solvation = -140.271222 kcal Electronic energy + Delta-G solvation = -27027.505833 eV Core-core repulsion = 23173.658301 eV Total energy + Delta-G solvation = -3853.847532 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.70361 -37.65340 -36.99727 -36.02322 -35.64689 -34.65792 -32.19395 -32.04764 -30.50918 -27.83799 -27.39959 -26.95820 -23.97396 -23.62272 -23.35979 -21.11752 -20.44194 -18.70335 -17.58845 -17.43013 -16.79530 -16.68129 -16.20868 -16.05379 -15.74064 -15.46885 -15.28902 -14.62423 -14.49304 -14.16431 -14.13493 -13.76222 -13.45797 -12.90900 -12.71751 -12.59094 -12.36600 -12.28772 -12.21558 -11.98165 -11.80945 -11.77004 -11.72642 -11.40339 -11.19653 -11.14815 -10.93594 -10.83050 -10.46908 -10.38556 -10.05207 -9.95327 -9.53879 -9.41223 -9.20530 -8.90158 -8.41118 -6.05679 -4.08736 0.43334 2.65923 3.14974 3.29294 3.36778 3.41770 3.73002 3.96069 4.18241 4.28337 4.42205 4.43158 4.64912 4.73069 4.79232 4.82792 4.96181 5.01503 5.16317 5.19285 5.20028 5.30816 5.33334 5.35606 5.38644 5.43351 5.52924 5.61075 5.68188 5.85740 5.90803 5.94499 6.14608 6.25343 6.43700 6.45909 6.67098 6.87481 6.98852 7.57582 7.67244 7.92504 8.32926 8.97780 9.56009 11.05561 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.003176 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.613910 B = 8814.875165 C = 9494.923339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.367 6.367 3 C 0.056 3.944 4 H 0.083 0.917 5 C 0.011 3.989 6 O -0.378 6.378 7 C 0.060 3.940 8 C -0.193 4.193 9 C 0.161 3.839 10 H 0.088 0.912 11 N -0.997 5.997 12 C 0.071 3.929 13 S 2.596 3.404 14 O -0.958 6.958 15 O -0.959 6.959 16 C -0.607 4.607 17 C -0.105 4.105 18 C 0.030 3.970 19 C -0.525 4.525 20 H 0.059 0.941 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.894 3.106 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.020 0.980 44 H 0.021 0.979 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.431 14.806 -13.611 24.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.286 6.286 3 C -0.004 4.004 4 H 0.101 0.899 5 C -0.065 4.065 6 O -0.297 6.297 7 C -0.016 4.016 8 C -0.232 4.232 9 C 0.055 3.945 10 H 0.106 0.894 11 N -0.834 5.834 12 C -0.073 4.073 13 S 2.694 3.306 14 O -0.948 6.948 15 O -0.949 6.949 16 C -0.739 4.739 17 C -0.145 4.145 18 C -0.008 4.008 19 C -0.564 4.564 20 H 0.077 0.923 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.143 0.857 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.681 15.116 -13.813 24.085 hybrid contribution 0.030 -0.939 1.009 1.378 sum -12.651 14.177 -12.804 22.913 Atomic orbital electron populations 1.22903 0.81027 1.03209 1.00131 1.87999 1.19693 1.26433 1.94500 1.22915 0.94374 0.85732 0.97373 0.89910 1.23853 0.99521 0.87170 0.96006 1.87921 1.32549 1.29904 1.79326 1.22596 0.84665 1.02317 0.92068 1.23138 1.05803 0.95627 0.98635 1.20992 0.88181 0.88560 0.96814 0.89362 1.57540 1.38507 1.52844 1.34465 1.22218 1.03790 0.96833 0.84426 1.05557 0.72937 0.76687 0.75373 1.93568 1.65970 1.83961 1.51338 1.93471 1.81512 1.46118 1.73811 1.30544 1.09833 1.18406 1.15070 1.21501 0.91434 1.02012 0.99538 1.19066 0.97293 0.91105 0.93333 1.21294 0.94716 1.16020 1.24342 0.92320 1.25024 0.96276 0.96378 0.96722 1.69970 1.25065 1.22965 1.35417 0.86503 0.83470 0.78551 0.79322 1.19585 1.20937 1.20936 0.93706 0.93942 0.89215 0.89094 0.89139 0.88447 0.92786 0.89874 0.85698 0.92848 0.91357 0.87340 0.85514 0.85445 0.91687 0.91634 0.96122 0.96113 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.82 101.05 1.09 1.24 16 2 O -0.37 -3.26 7.74 -35.23 -0.27 -3.53 16 3 C 0.06 0.49 2.39 -26.59 -0.06 0.42 16 4 H 0.08 0.63 7.79 -51.93 -0.40 0.23 16 5 C 0.01 0.10 5.89 37.21 0.22 0.32 16 6 O -0.38 -3.96 10.77 -35.23 -0.38 -4.34 16 7 C 0.06 0.62 6.68 37.20 0.25 0.87 16 8 C -0.19 -2.02 5.56 -26.59 -0.15 -2.17 16 9 C 0.16 1.70 2.74 -67.75 -0.19 1.51 16 10 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 11 N -1.00 -11.81 2.56 -114.42 -0.29 -12.10 16 12 C 0.07 0.74 7.83 59.85 0.47 1.21 16 13 S 2.60 38.92 5.35 -107.50 -0.58 38.34 16 14 O -0.96 -16.95 17.14 -57.54 -0.99 -17.94 16 15 O -0.96 -15.80 14.55 -57.54 -0.84 -16.63 16 16 C -0.61 -9.70 6.18 37.16 0.23 -9.47 16 17 C -0.11 -2.17 5.16 -26.73 -0.14 -2.31 16 18 C 0.03 0.78 4.97 -27.89 -0.14 0.64 16 19 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 20 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 22 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 23 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H 0.04 0.25 8.09 -51.93 -0.42 -0.17 16 28 H 0.04 0.21 7.96 -51.93 -0.41 -0.20 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.64 7.96 -51.93 -0.41 0.23 16 31 H 0.09 0.79 3.58 -51.93 -0.19 0.60 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.60 7.51 -51.93 -0.39 0.21 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.13 1.55 5.24 -51.93 -0.27 1.28 16 36 H 0.05 0.52 6.74 -51.93 -0.35 0.17 16 37 H 0.07 0.70 7.89 -51.93 -0.41 0.29 16 38 H 0.11 0.98 3.53 -51.93 -0.18 0.80 16 39 H 0.13 1.84 8.14 -51.93 -0.42 1.42 16 40 H 0.13 1.88 8.14 -51.92 -0.42 1.45 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 358.80 15.07 5.41 5.41 Total: -1.00 -34.26 358.80 -8.26 -42.52 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -7.21 Total: -0.98 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: 1.18 Total: -21.41 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.44 Total: -38.05 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -2.48 Total: -42.45 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 38.92 SS G_CDS: -0.58 Total: 38.34 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.26 -8.26 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882743721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.756 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds