Wall clock time and date at job start Fri Apr 10 2020 14:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99722 * 2 1 4 4 H 1.08997 * 109.57733 * 29.83373 * 3 2 1 5 5 C 1.53097 * 109.51790 * 269.68274 * 3 2 1 6 6 O 1.42903 * 109.41151 * 182.48482 * 5 3 2 7 7 C 1.42904 * 114.09767 * 61.15946 * 6 5 3 8 8 C 1.53085 * 109.41475 * 298.83681 * 7 6 5 9 9 C 1.53175 * 109.52527 * 149.99766 * 3 2 1 10 10 H 1.08994 * 109.54117 * 296.75019 * 9 3 2 11 11 N 1.46496 * 109.61431 * 56.97282 * 9 3 2 12 12 C 1.46503 * 120.00269 * 7.51219 * 11 9 3 13 13 S 1.65602 * 119.99849 * 187.51439 * 11 9 3 14 14 O 1.42106 * 104.27577 * 206.07093 * 13 11 9 15 15 O 1.42104 * 104.27788 * 333.92515 * 13 11 9 16 16 C 1.81396 * 104.45018 * 89.99902 * 13 11 9 17 17 C 1.53009 * 109.47225 * 180.02562 * 16 13 11 18 18 C 1.52993 * 109.47259 * 179.97438 * 17 16 13 19 19 C 1.50702 * 109.47102 * 180.02562 * 18 17 16 20 20 H 1.07991 * 119.99934 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99807 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00159 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00004 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46908 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47158 * 120.00075 * 23 21 19 26 26 H 1.48503 * 109.47106 * 240.00208 * 23 21 19 27 27 H 1.09001 * 109.48080 * 300.00495 * 1 2 3 28 28 H 1.09001 * 109.47224 * 60.00989 * 1 2 3 29 29 H 1.09002 * 109.46985 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.48318 * 62.50213 * 5 3 2 31 31 H 1.08994 * 109.48173 * 302.46650 * 5 3 2 32 32 H 1.09007 * 109.48123 * 178.85565 * 7 6 5 33 33 H 1.08998 * 109.48190 * 58.82393 * 7 6 5 34 34 H 1.08997 * 109.52541 * 297.70460 * 8 7 6 35 35 H 1.09001 * 109.57814 * 177.54461 * 8 7 6 36 36 H 1.08996 * 109.46935 * 92.61489 * 12 11 9 37 37 H 1.09000 * 109.47208 * 212.61269 * 12 11 9 38 38 H 1.09001 * 109.47016 * 332.60834 * 12 11 9 39 39 H 1.08993 * 109.47121 * 299.99954 * 16 13 11 40 40 H 1.09005 * 109.47408 * 60.00504 * 16 13 11 41 41 H 1.09006 * 109.46722 * 299.99913 * 17 16 13 42 42 H 1.09000 * 109.47248 * 59.99786 * 17 16 13 43 43 H 1.09002 * 109.47137 * 300.00144 * 18 17 16 44 44 H 1.09005 * 109.47550 * 59.99915 * 18 17 16 45 45 H 0.97002 * 120.00097 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 2.0015 0.5109 5 6 2.2254 1.7696 -1.4430 6 8 2.8595 3.0502 -1.4404 7 6 4.1470 3.0626 -0.8204 8 6 4.0088 2.6506 0.6475 9 6 3.3605 1.2648 0.7219 10 1 3.2079 0.9891 1.7653 11 7 4.2331 0.2802 0.0774 12 6 3.8172 -0.3600 -1.1729 13 16 5.6898 -0.1089 0.7622 14 8 6.4872 -0.5408 -0.3319 15 8 6.0420 1.0434 1.5155 16 6 5.3146 -1.4999 1.8645 17 6 6.5962 -1.9556 2.5651 18 6 6.2796 -3.1283 3.4953 19 6 7.5419 -3.5767 4.1858 20 1 8.4764 -3.0757 3.9812 21 6 7.5035 -4.6267 5.0786 22 7 6.3653 -5.2365 5.3280 23 14 9.0682 -5.1831 5.9340 24 1 10.2050 -4.3405 5.4834 25 1 8.9035 -5.0484 7.4037 26 1 9.3399 -6.6029 5.5943 27 1 -0.3635 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.2628 1.8415 -1.9492 31 1 2.8581 1.0518 -1.9651 32 1 4.5686 4.0662 -0.8781 33 1 4.8047 2.3617 -1.3343 34 1 3.3839 3.3737 1.1716 35 1 4.9945 2.6169 1.1117 36 1 4.2059 0.2073 -2.0185 37 1 4.2075 -1.3772 -1.2076 38 1 2.7286 -0.3868 -1.2228 39 1 4.5851 -1.1854 2.6109 40 1 4.9055 -2.3252 1.2818 41 1 7.3260 -2.2699 1.8189 42 1 7.0050 -1.1301 3.1479 43 1 5.5499 -2.8136 4.2414 44 1 5.8706 -3.9540 2.9129 45 1 6.3383 -5.9754 5.9559 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882743721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:39 Heat of formation + Delta-G solvation = -165.282719 kcal Electronic energy + Delta-G solvation = -27028.590413 eV Core-core repulsion = 23173.658301 eV Total energy + Delta-G solvation = -3854.932111 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.44561 -38.38657 -38.21157 -37.14604 -36.69083 -36.47517 -34.18330 -32.88494 -31.21044 -29.68362 -28.25930 -27.47854 -25.64426 -24.67545 -24.10399 -22.46475 -21.72673 -19.87225 -18.65479 -18.50700 -18.18109 -17.54085 -17.38615 -17.14947 -16.73148 -16.54999 -16.27011 -16.20518 -15.74912 -15.18495 -14.99167 -14.57840 -14.51541 -14.22545 -14.08411 -13.74739 -13.61927 -13.51056 -13.19921 -13.11094 -13.02609 -12.92418 -12.87293 -12.78410 -12.62451 -12.56783 -12.22207 -12.04260 -11.92960 -11.78732 -11.39818 -11.17856 -11.06094 -10.78593 -10.59691 -10.16490 -9.93904 -8.24043 -6.35480 -0.79606 1.39120 1.39587 1.53160 1.59333 2.38869 2.49145 2.74210 3.02462 3.09175 3.10119 3.44070 3.69158 3.76193 3.84819 3.91884 3.98871 4.06759 4.11494 4.35247 4.39738 4.48736 4.53511 4.59998 4.61182 4.65247 4.75996 4.78554 4.83853 4.88650 4.93513 4.95491 5.02432 5.09172 5.15962 5.29823 5.43082 5.55014 5.59964 5.77370 6.01169 6.17574 6.31631 6.80127 7.34066 8.87745 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.003176 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.613910 B = 8814.875165 C = 9494.923339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.383 6.383 3 C 0.063 3.937 4 H 0.099 0.901 5 C 0.007 3.993 6 O -0.386 6.386 7 C 0.059 3.941 8 C -0.192 4.192 9 C 0.149 3.851 10 H 0.093 0.907 11 N -0.987 5.987 12 C 0.064 3.936 13 S 2.621 3.379 14 O -0.985 6.985 15 O -0.973 6.973 16 C -0.610 4.610 17 C -0.105 4.105 18 C 0.031 3.969 19 C -0.552 4.552 20 H 0.061 0.939 21 C 0.002 3.998 22 N -0.930 5.930 23 Si 0.964 3.036 24 H -0.263 1.263 25 H -0.276 1.276 26 H -0.276 1.276 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.042 0.958 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.126 0.874 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.002 0.998 44 H 0.001 0.999 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.177 15.598 -14.070 25.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.302 6.302 3 C 0.003 3.997 4 H 0.117 0.883 5 C -0.069 4.069 6 O -0.305 6.305 7 C -0.018 4.018 8 C -0.231 4.231 9 C 0.043 3.957 10 H 0.110 0.890 11 N -0.826 5.826 12 C -0.080 4.080 13 S 2.718 3.282 14 O -0.975 6.975 15 O -0.963 6.963 16 C -0.741 4.741 17 C -0.144 4.144 18 C -0.007 4.007 19 C -0.590 4.590 20 H 0.079 0.921 21 C -0.196 4.196 22 N -0.570 5.570 23 Si 0.789 3.211 24 H -0.187 1.187 25 H -0.201 1.201 26 H -0.202 1.202 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.129 0.871 31 H 0.107 0.893 32 H 0.127 0.873 33 H 0.060 0.940 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.144 0.856 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.021 0.979 44 H 0.019 0.981 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.424 15.901 -14.266 25.230 hybrid contribution 0.152 -1.161 1.115 1.617 sum -13.272 14.740 -13.151 23.798 Atomic orbital electron populations 1.23068 0.79559 1.03944 1.01197 1.87953 1.21280 1.26442 1.94571 1.22838 0.93438 0.86163 0.97267 0.88347 1.23982 1.00291 0.86515 0.96148 1.87914 1.32422 1.30847 1.79311 1.22612 0.84680 1.02745 0.91729 1.23093 1.05046 0.96131 0.98867 1.21261 0.89020 0.88082 0.97359 0.88951 1.57264 1.37843 1.52915 1.34589 1.22454 1.04980 0.96796 0.83762 1.04661 0.73303 0.75695 0.74531 1.93529 1.67518 1.84306 1.52158 1.93462 1.82318 1.46243 1.74284 1.30537 1.07879 1.19852 1.15798 1.21307 0.93839 1.00238 0.99005 1.18960 0.95926 0.92348 0.93477 1.21758 0.95759 1.16525 1.24971 0.92123 1.25954 0.99800 0.96409 0.97425 1.70082 1.27287 1.23509 1.36118 0.85408 0.79283 0.78233 0.78210 1.18724 1.20125 1.20187 0.93122 0.92388 0.88740 0.87135 0.89326 0.87273 0.93976 0.88087 0.87709 0.92237 0.91440 0.85629 0.84120 0.84338 0.91748 0.91410 0.97928 0.98059 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.82 113.37 1.23 1.40 16 2 O -0.38 -5.89 7.74 -148.98 -1.15 -7.04 16 3 C 0.06 0.94 2.39 30.69 0.07 1.01 16 4 H 0.10 1.20 7.79 -2.39 -0.02 1.18 16 5 C 0.01 0.10 5.89 72.01 0.42 0.53 16 6 O -0.39 -7.27 10.77 -148.98 -1.60 -8.87 16 7 C 0.06 1.13 6.68 72.01 0.48 1.61 16 8 C -0.19 -3.77 5.56 30.68 0.17 -3.60 16 9 C 0.15 2.90 2.74 45.11 0.12 3.02 16 10 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 11 N -0.99 -22.30 2.56 -515.90 -1.32 -23.62 16 12 C 0.06 1.23 7.83 127.77 1.00 2.23 16 13 S 2.62 77.57 5.35 -56.49 -0.30 77.27 16 14 O -0.98 -34.67 17.14 -127.65 -2.19 -36.86 16 15 O -0.97 -31.78 14.55 -127.65 -1.86 -33.64 16 16 C -0.61 -19.42 6.18 71.99 0.44 -18.98 16 17 C -0.10 -4.38 5.16 30.59 0.16 -4.22 16 18 C 0.03 1.64 4.97 29.85 0.15 1.79 16 19 C -0.55 -31.79 9.11 25.60 0.23 -31.55 16 20 H 0.06 3.37 7.74 -2.92 -0.02 3.35 16 21 C 0.00 0.13 5.46 84.65 0.46 0.60 16 22 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 23 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 24 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 27 H 0.05 0.44 8.09 -2.39 -0.02 0.42 16 28 H 0.06 0.39 7.96 -2.39 -0.02 0.37 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.11 1.21 7.96 -2.39 -0.02 1.19 16 31 H 0.09 1.35 3.58 -2.39 -0.01 1.34 16 32 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.04 0.90 7.51 -2.39 -0.02 0.88 16 34 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.10 2.54 5.24 -2.39 -0.01 2.52 16 36 H 0.06 1.10 6.74 -2.39 -0.02 1.08 16 37 H 0.07 1.32 7.89 -2.39 -0.02 1.30 16 38 H 0.13 2.03 3.53 -2.39 -0.01 2.02 16 39 H 0.14 4.03 8.14 -2.39 -0.02 4.01 16 40 H 0.14 4.05 8.14 -2.39 -0.02 4.03 16 41 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 42 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 45 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -73.13 358.80 -0.19 -73.33 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.98 Total: 15.03 kcal Atomic # 6 Polarization: -51.10 SS G_CDS: 4.95 Total: -46.15 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -1.04 Total: -79.50 kcal Atomic # 8 Polarization: -79.61 SS G_CDS: -6.80 Total: -86.41 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 77.57 SS G_CDS: -0.30 Total: 77.27 kcal Total: -73.13 -0.19 -73.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882743721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.958 kcal (2) G-P(sol) polarization free energy of solvation -73.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds