Wall clock time and date at job start Fri Apr 10 2020 14:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00219 * 2 1 4 4 C 1.53007 * 109.47066 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46963 * 184.85475 * 4 3 2 6 6 N 1.46503 * 110.45307 * 302.54881 * 5 4 3 7 7 S 1.65601 * 119.99894 * 173.62102 * 6 5 4 8 8 O 1.42100 * 104.27964 * 309.92825 * 7 6 5 9 9 O 1.42098 * 104.28133 * 182.06863 * 7 6 5 10 10 C 1.81400 * 104.44887 * 65.99649 * 7 6 5 11 11 C 1.53004 * 109.47187 * 171.14594 * 10 7 6 12 12 C 1.52997 * 109.47002 * 180.02562 * 11 10 7 13 13 C 1.50705 * 109.47002 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99719 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00206 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99662 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00233 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46857 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47365 * 119.99554 * 17 15 13 20 20 H 1.48500 * 109.46820 * 239.99778 * 17 15 13 21 21 C 1.54514 * 110.62735 * 179.86980 * 5 4 3 22 22 C 1.54470 * 104.05997 * 241.29415 * 21 5 4 23 23 O 1.44422 * 104.80921 * 336.02164 * 22 21 5 24 24 C 1.44423 * 105.27439 * 40.51021 * 23 22 21 25 25 H 1.09005 * 109.46926 * 59.99369 * 1 2 3 26 26 H 1.08991 * 109.47504 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46771 * 300.00100 * 1 2 3 28 28 H 1.09001 * 109.47114 * 60.00450 * 3 2 1 29 29 H 1.08994 * 109.47212 * 299.99910 * 3 2 1 30 30 H 1.08993 * 109.47148 * 64.84967 * 4 3 2 31 31 H 1.09005 * 109.46918 * 304.85155 * 4 3 2 32 32 H 0.97000 * 120.00070 * 353.62704 * 6 5 4 33 33 H 1.08999 * 109.47032 * 51.14042 * 10 7 6 34 34 H 1.08998 * 109.47377 * 291.14118 * 10 7 6 35 35 H 1.08993 * 109.47230 * 60.00019 * 11 10 7 36 36 H 1.09006 * 109.46515 * 299.99701 * 11 10 7 37 37 H 1.08998 * 109.47301 * 299.99365 * 12 11 10 38 38 H 1.09001 * 109.47211 * 60.00179 * 12 11 10 39 39 H 0.97000 * 119.99697 * 179.97438 * 16 15 13 40 40 H 1.09004 * 110.50637 * 359.93909 * 21 5 4 41 41 H 1.08999 * 110.51167 * 122.64644 * 21 5 4 42 42 H 1.09001 * 110.37469 * 217.18678 * 22 21 5 43 43 H 1.08999 * 110.46791 * 94.90279 * 22 21 5 44 44 H 1.09003 * 110.37315 * 200.66169 * 24 23 22 45 45 H 1.09001 * 110.46743 * 78.37140 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 6 4.1575 2.5771 0.1214 6 7 3.6982 3.4403 -0.9695 7 16 4.1004 5.0467 -0.9795 8 8 3.7530 5.5032 0.3206 9 8 3.4531 5.5629 -2.1344 10 6 5.9010 5.0611 -1.1992 11 6 6.3733 6.4954 -1.4457 12 6 7.8919 6.5074 -1.6316 13 6 8.3570 7.9201 -1.8751 14 1 7.6409 8.7284 -1.8956 15 6 9.6965 8.1805 -2.0726 16 7 10.5683 7.1962 -2.0481 17 14 10.2730 9.9316 -2.3737 18 1 9.1046 10.8479 -2.3528 19 1 11.2317 10.3268 -1.3108 20 1 10.9410 10.0120 -3.6976 21 6 5.7000 2.4857 0.1267 22 6 6.1058 3.0696 1.4980 23 8 5.0053 3.9255 1.8751 24 6 3.8140 3.2053 1.4902 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8899 30 1 3.8629 0.7207 -0.9310 31 1 3.8517 0.5702 0.8425 32 1 3.1584 3.0710 -1.6858 33 1 6.1678 4.4388 -2.0533 34 1 6.3797 4.6704 -0.3013 35 1 6.1065 7.1177 -0.5916 36 1 5.8946 6.8862 -2.3437 37 1 8.3709 6.1165 -0.7339 38 1 8.1583 5.8853 -2.4860 39 1 11.5106 7.3793 -2.1874 40 1 6.0213 1.4475 0.0434 41 1 6.1207 3.0829 -0.6823 42 1 7.0239 3.6500 1.4067 43 1 6.2336 2.2715 2.2293 44 1 2.9715 3.8900 1.3928 45 1 3.5871 2.4269 2.2188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000445082219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:43 Heat of formation + Delta-G solvation = -163.598170 kcal Electronic energy + Delta-G solvation = -26799.534928 eV Core-core repulsion = 22944.675864 eV Total energy + Delta-G solvation = -3854.859064 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.39639 -38.18733 -36.75871 -35.71347 -35.57761 -34.72107 -32.28323 -31.59382 -30.66601 -28.14646 -27.68854 -26.47207 -24.04104 -23.80106 -22.35556 -20.94677 -20.37806 -19.21523 -17.77370 -16.93830 -16.85607 -16.52191 -16.29113 -15.94611 -15.69656 -15.45960 -15.23536 -15.07315 -14.53223 -14.43584 -14.19860 -13.81320 -13.34450 -12.96865 -12.55489 -12.44346 -12.24718 -11.99602 -11.87141 -11.83568 -11.75815 -11.62564 -11.56445 -11.50389 -11.24046 -11.19902 -10.92409 -10.82479 -10.66738 -10.36301 -10.12747 -10.03046 -9.92544 -9.55350 -9.29814 -9.06650 -8.40327 -6.05328 -4.07787 0.50702 2.77482 3.24278 3.29905 3.37434 3.42593 3.83181 3.95932 4.14708 4.39981 4.43883 4.45505 4.57819 4.66807 4.74526 4.78464 4.94349 4.97027 5.02585 5.04924 5.14249 5.21281 5.28110 5.31334 5.32850 5.41835 5.51199 5.59483 5.67136 5.72856 5.80271 5.87683 5.97778 6.30090 6.47258 6.70256 6.73779 6.84260 6.90252 7.57819 7.68156 7.93165 8.34149 8.98600 9.56892 11.05992 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025476 B = 0.003068 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.812204 B = 9123.793793 C = 9515.243001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.393 6.393 3 C 0.056 3.944 4 C -0.106 4.106 5 C 0.154 3.846 6 N -1.115 6.115 7 S 2.596 3.404 8 O -0.941 6.941 9 O -0.967 6.967 10 C -0.617 4.617 11 C -0.104 4.104 12 C 0.032 3.968 13 C -0.524 4.524 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.284 1.284 21 C -0.201 4.201 22 C 0.027 3.973 23 O -0.345 6.345 24 C 0.027 3.973 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.414 0.586 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.020 0.980 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.066 0.934 44 H 0.117 0.883 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.342 -17.067 5.472 24.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.312 6.312 3 C -0.020 4.020 4 C -0.145 4.145 5 C 0.064 3.936 6 N -0.872 5.872 7 S 2.692 3.308 8 O -0.931 6.931 9 O -0.957 6.957 10 C -0.748 4.748 11 C -0.143 4.143 12 C -0.007 4.007 13 C -0.562 4.562 14 H 0.077 0.923 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.721 3.279 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.210 1.210 21 C -0.240 4.240 22 C -0.050 4.050 23 O -0.263 6.263 24 C -0.051 4.051 25 H 0.061 0.939 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.249 0.751 33 H 0.145 0.855 34 H 0.155 0.845 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.084 0.916 44 H 0.135 0.865 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.581 -16.267 5.804 23.942 hybrid contribution 0.669 0.266 -0.774 1.057 sum -15.912 -16.001 5.029 23.120 Atomic orbital electron populations 1.22756 0.80783 1.02799 1.00222 1.87847 1.19922 1.27924 1.95496 1.22582 0.93664 0.84742 1.01049 1.21667 0.93538 0.94491 1.04833 1.21471 0.93631 0.90806 0.87724 1.55922 1.68000 1.29485 1.33757 1.05487 0.78459 0.72337 0.74500 1.93615 1.81707 1.78661 1.39122 1.93576 1.73468 1.76928 1.51747 1.30896 1.23814 1.08852 1.11269 1.21487 1.02819 0.88445 1.01539 1.19054 0.86753 0.97442 0.97431 1.21298 0.92670 0.93399 1.48866 0.92339 1.25016 0.96865 0.97247 0.95281 1.69965 1.02163 1.31204 1.50160 0.86507 0.78797 0.84775 0.77795 1.19600 1.20938 1.20975 1.24081 0.94366 1.04816 1.00738 1.23606 0.92506 0.95024 0.93895 1.89416 1.13910 1.40322 1.82645 1.24165 0.91522 0.96852 0.92579 0.93929 0.89568 0.93927 0.92646 0.92826 0.89709 0.89107 0.75140 0.85536 0.84533 0.91694 0.91580 0.96125 0.96216 0.92989 0.88481 0.87844 0.87896 0.91569 0.86471 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.48 10.70 -35.23 -0.38 -3.86 16 3 C 0.06 0.44 5.58 37.16 0.21 0.65 16 4 C -0.11 -0.78 4.43 -26.73 -0.12 -0.90 16 5 C 0.15 1.44 0.88 -130.25 -0.11 1.33 16 6 N -1.11 -11.68 5.16 1.80 0.01 -11.67 16 7 S 2.60 38.74 5.28 -107.50 -0.57 38.18 16 8 O -0.94 -16.21 13.56 -66.09 -0.90 -17.11 16 9 O -0.97 -17.29 18.08 -57.54 -1.04 -18.33 16 10 C -0.62 -9.68 4.14 37.16 0.15 -9.52 16 11 C -0.10 -2.12 5.16 -26.73 -0.14 -2.26 16 12 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16 13 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 14 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 17 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 C -0.20 -1.87 5.73 -25.16 -0.14 -2.01 16 22 C 0.03 0.29 6.66 37.93 0.25 0.54 16 23 O -0.35 -4.79 10.08 -56.44 -0.57 -5.36 16 24 C 0.03 0.30 4.81 37.93 0.18 0.49 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.42 7.29 -51.93 -0.38 0.04 16 29 H 0.05 0.40 7.07 -51.93 -0.37 0.03 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.41 3.50 7.61 -34.47 -0.26 3.24 16 33 H 0.13 1.72 7.70 -51.92 -0.40 1.32 16 34 H 0.14 2.00 4.72 -51.93 -0.24 1.76 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.10 0.67 7.74 -51.93 -0.40 0.27 16 41 H 0.10 1.04 4.10 -51.93 -0.21 0.83 16 42 H 0.10 1.15 7.61 -51.93 -0.40 0.76 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.12 1.45 6.43 -51.93 -0.33 1.12 16 45 H 0.07 0.59 7.83 -51.93 -0.41 0.19 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -35.61 360.46 -8.62 -44.22 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.17 Total: 0.94 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 0.84 Total: -23.31 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.75 Total: -37.45 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -2.88 Total: -44.66 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 38.74 SS G_CDS: -0.57 Total: 38.18 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.61 -8.62 -44.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000445082219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.374 kcal (2) G-P(sol) polarization free energy of solvation -35.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds