Wall clock time and date at job start Fri Apr 10 2020 14:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00219 * 2 1 4 4 C 1.53007 * 109.47066 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46963 * 184.85475 * 4 3 2 6 6 N 1.46503 * 110.45307 * 302.54881 * 5 4 3 7 7 S 1.65601 * 119.99894 * 173.62102 * 6 5 4 8 8 O 1.42100 * 104.27964 * 309.92825 * 7 6 5 9 9 O 1.42098 * 104.28133 * 182.06863 * 7 6 5 10 10 C 1.81400 * 104.44887 * 65.99649 * 7 6 5 11 11 C 1.53004 * 109.47187 * 171.14594 * 10 7 6 12 12 C 1.52997 * 109.47002 * 180.02562 * 11 10 7 13 13 C 1.50705 * 109.47002 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99719 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00206 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99662 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00233 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46857 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47365 * 119.99554 * 17 15 13 20 20 H 1.48500 * 109.46820 * 239.99778 * 17 15 13 21 21 C 1.54514 * 110.62735 * 179.86980 * 5 4 3 22 22 C 1.54470 * 104.05997 * 241.29415 * 21 5 4 23 23 O 1.44422 * 104.80921 * 336.02164 * 22 21 5 24 24 C 1.44423 * 105.27439 * 40.51021 * 23 22 21 25 25 H 1.09005 * 109.46926 * 59.99369 * 1 2 3 26 26 H 1.08991 * 109.47504 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46771 * 300.00100 * 1 2 3 28 28 H 1.09001 * 109.47114 * 60.00450 * 3 2 1 29 29 H 1.08994 * 109.47212 * 299.99910 * 3 2 1 30 30 H 1.08993 * 109.47148 * 64.84967 * 4 3 2 31 31 H 1.09005 * 109.46918 * 304.85155 * 4 3 2 32 32 H 0.97000 * 120.00070 * 353.62704 * 6 5 4 33 33 H 1.08999 * 109.47032 * 51.14042 * 10 7 6 34 34 H 1.08998 * 109.47377 * 291.14118 * 10 7 6 35 35 H 1.08993 * 109.47230 * 60.00019 * 11 10 7 36 36 H 1.09006 * 109.46515 * 299.99701 * 11 10 7 37 37 H 1.08998 * 109.47301 * 299.99365 * 12 11 10 38 38 H 1.09001 * 109.47211 * 60.00179 * 12 11 10 39 39 H 0.97000 * 119.99697 * 179.97438 * 16 15 13 40 40 H 1.09004 * 110.50637 * 359.93909 * 21 5 4 41 41 H 1.08999 * 110.51167 * 122.64644 * 21 5 4 42 42 H 1.09001 * 110.37469 * 217.18678 * 22 21 5 43 43 H 1.08999 * 110.46791 * 94.90279 * 22 21 5 44 44 H 1.09003 * 110.37315 * 200.66169 * 24 23 22 45 45 H 1.09001 * 110.46743 * 78.37140 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 6 4.1575 2.5771 0.1214 6 7 3.6982 3.4403 -0.9695 7 16 4.1004 5.0467 -0.9795 8 8 3.7530 5.5032 0.3206 9 8 3.4531 5.5629 -2.1344 10 6 5.9010 5.0611 -1.1992 11 6 6.3733 6.4954 -1.4457 12 6 7.8919 6.5074 -1.6316 13 6 8.3570 7.9201 -1.8751 14 1 7.6409 8.7284 -1.8956 15 6 9.6965 8.1805 -2.0726 16 7 10.5683 7.1962 -2.0481 17 14 10.2730 9.9316 -2.3737 18 1 9.1046 10.8479 -2.3528 19 1 11.2317 10.3268 -1.3108 20 1 10.9410 10.0120 -3.6976 21 6 5.7000 2.4857 0.1267 22 6 6.1058 3.0696 1.4980 23 8 5.0053 3.9255 1.8751 24 6 3.8140 3.2053 1.4902 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8899 30 1 3.8629 0.7207 -0.9310 31 1 3.8517 0.5702 0.8425 32 1 3.1584 3.0710 -1.6858 33 1 6.1678 4.4388 -2.0533 34 1 6.3797 4.6704 -0.3013 35 1 6.1065 7.1177 -0.5916 36 1 5.8946 6.8862 -2.3437 37 1 8.3709 6.1165 -0.7339 38 1 8.1583 5.8853 -2.4860 39 1 11.5106 7.3793 -2.1874 40 1 6.0213 1.4475 0.0434 41 1 6.1207 3.0829 -0.6823 42 1 7.0239 3.6500 1.4067 43 1 6.2336 2.2715 2.2293 44 1 2.9715 3.8900 1.3928 45 1 3.5871 2.4269 2.2188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000445082219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:42 Heat of formation + Delta-G solvation = -190.792907 kcal Electronic energy + Delta-G solvation = -26800.714180 eV Core-core repulsion = 22944.675864 eV Total energy + Delta-G solvation = -3856.038316 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.21394 -38.79223 -38.06707 -37.00700 -36.53927 -36.42551 -34.24064 -32.36352 -31.55828 -29.58235 -28.78093 -27.03313 -25.66921 -24.74216 -23.21273 -22.38802 -21.45963 -20.32820 -18.83989 -18.60098 -17.83791 -17.58183 -17.08500 -16.93522 -16.70973 -16.54592 -16.43199 -16.22531 -15.79505 -15.61332 -15.29675 -14.60732 -14.44893 -14.30518 -13.88387 -13.63549 -13.41188 -13.33641 -13.14401 -13.07578 -12.87940 -12.76423 -12.74458 -12.55255 -12.46446 -12.30473 -12.14004 -12.08646 -11.87430 -11.73636 -11.64010 -11.33768 -11.14317 -10.87275 -10.59073 -10.57908 -10.29075 -8.23083 -6.33500 -0.72392 1.38905 1.39712 1.52892 1.70954 2.39417 2.62771 2.76281 3.08844 3.10486 3.21073 3.45369 3.61086 3.71013 3.85586 3.92831 4.02540 4.08372 4.16279 4.27732 4.37864 4.42690 4.53893 4.56191 4.59405 4.63571 4.73323 4.83629 4.86062 4.88123 4.91605 4.95748 5.02416 5.06388 5.12483 5.16060 5.45182 5.63428 5.79303 5.89057 6.06562 6.20139 6.20605 6.81690 7.35572 8.88560 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025476 B = 0.003068 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.812204 B = 9123.793793 C = 9515.243001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.051 3.949 4 C -0.098 4.098 5 C 0.157 3.843 6 N -1.098 6.098 7 S 2.621 3.379 8 O -0.964 6.964 9 O -0.996 6.996 10 C -0.619 4.619 11 C -0.102 4.102 12 C 0.034 3.966 13 C -0.551 4.551 14 H 0.057 0.943 15 C 0.004 3.996 16 N -0.928 5.928 17 Si 0.961 3.039 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.201 4.201 22 C 0.019 3.981 23 O -0.382 6.382 24 C 0.020 3.980 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.427 0.573 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.003 0.997 38 H 0.005 0.995 39 H 0.265 0.735 40 H 0.129 0.871 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.897 -18.338 5.421 25.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C -0.026 4.026 4 C -0.137 4.137 5 C 0.068 3.932 6 N -0.859 5.859 7 S 2.716 3.284 8 O -0.954 6.954 9 O -0.987 6.987 10 C -0.749 4.749 11 C -0.142 4.142 12 C -0.004 4.004 13 C -0.589 4.589 14 H 0.076 0.924 15 C -0.195 4.195 16 N -0.568 5.568 17 Si 0.786 3.214 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.201 1.201 21 C -0.240 4.240 22 C -0.058 4.058 23 O -0.301 6.301 24 C -0.058 4.058 25 H 0.065 0.935 26 H 0.116 0.884 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.264 0.736 33 H 0.166 0.834 34 H 0.164 0.836 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.022 0.978 38 H 0.023 0.977 39 H 0.074 0.926 40 H 0.147 0.853 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.118 0.882 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.143 -17.536 5.741 25.187 hybrid contribution 0.805 0.586 -0.711 1.223 sum -16.339 -16.950 5.030 24.074 Atomic orbital electron populations 1.22924 0.79738 1.03831 1.00733 1.87811 1.21174 1.28318 1.95604 1.22654 0.94065 0.84626 1.01251 1.21632 0.93024 0.92870 1.06161 1.21578 0.93986 0.91403 0.86262 1.55491 1.67707 1.28035 1.34660 1.04508 0.77428 0.73173 0.73275 1.93596 1.81743 1.79926 1.40117 1.93533 1.73871 1.78443 1.52835 1.30913 1.25161 1.05996 1.12782 1.21280 0.99707 0.91806 1.01365 1.18931 0.89869 0.95778 0.95803 1.21758 0.93246 0.94832 1.49111 0.92424 1.25906 0.97017 1.01644 0.94887 1.70068 1.02605 1.33368 1.50781 0.85450 0.78407 0.79547 0.77994 1.18956 1.20178 1.20119 1.24115 0.93938 1.06472 0.99434 1.23778 0.91292 0.95237 0.95483 1.89372 1.15403 1.42122 1.83167 1.24303 0.90266 0.97035 0.94231 0.93469 0.88374 0.93395 0.92613 0.92619 0.88494 0.87590 0.73559 0.83380 0.83578 0.92143 0.91721 0.97835 0.97708 0.92618 0.85325 0.88847 0.89274 0.89044 0.88227 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -6.33 10.70 -148.98 -1.59 -7.93 16 3 C 0.05 0.68 5.58 71.98 0.40 1.08 16 4 C -0.10 -1.13 4.43 30.60 0.14 -0.99 16 5 C 0.16 2.59 0.88 4.62 0.00 2.59 16 6 N -1.10 -21.16 5.16 -148.21 -0.76 -21.93 16 7 S 2.62 77.01 5.28 -56.49 -0.30 76.71 16 8 O -0.96 -33.29 13.56 -119.48 -1.62 -34.91 16 9 O -1.00 -35.26 18.08 -127.65 -2.31 -37.56 16 10 C -0.62 -19.28 4.14 71.98 0.30 -18.99 16 11 C -0.10 -4.28 5.16 30.59 0.16 -4.13 16 12 C 0.03 1.78 4.97 29.85 0.15 1.93 16 13 C -0.55 -31.69 9.11 25.60 0.23 -31.45 16 14 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 15 C 0.00 0.21 5.46 84.65 0.46 0.68 16 16 N -0.93 -55.54 13.29 21.45 0.28 -55.26 16 17 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 21 C -0.20 -3.26 5.73 31.61 0.18 -3.08 16 22 C 0.02 0.38 6.66 72.48 0.48 0.86 16 23 O -0.38 -10.38 10.08 -128.71 -1.30 -11.68 16 24 C 0.02 0.41 4.81 72.48 0.35 0.76 16 25 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 26 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.73 7.29 -2.39 -0.02 0.72 16 29 H 0.06 0.70 7.07 -2.39 -0.02 0.68 16 30 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.11 0.97 8.09 -2.38 -0.02 0.95 16 32 H 0.43 6.31 7.61 -96.75 -0.74 5.57 16 33 H 0.15 3.90 7.70 -2.39 -0.02 3.88 16 34 H 0.15 4.28 4.72 -2.39 -0.01 4.27 16 35 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.06 2.67 8.14 -2.38 -0.02 2.65 16 37 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 40 H 0.13 1.28 7.74 -2.39 -0.02 1.26 16 41 H 0.09 1.72 4.10 -2.39 -0.01 1.71 16 42 H 0.09 1.99 7.61 -2.39 -0.02 1.97 16 43 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.10 2.42 6.43 -2.39 -0.02 2.40 16 45 H 0.09 1.42 7.83 -2.39 -0.02 1.40 16 Total: -1.00 -77.08 360.46 -1.22 -78.30 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.25 Total: 16.95 kcal Atomic # 6 Polarization: -53.33 SS G_CDS: 4.10 Total: -49.23 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -0.48 Total: -77.19 kcal Atomic # 8 Polarization: -85.26 SS G_CDS: -6.82 Total: -92.08 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 77.01 SS G_CDS: -0.30 Total: 76.71 kcal Total: -77.08 -1.22 -78.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000445082219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.496 kcal (2) G-P(sol) polarization free energy of solvation -77.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds