Wall clock time and date at job start Fri Apr 10 2020 14:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35994 * 117.00101 * 2 1 4 4 C 1.38563 * 120.07364 * 0.23251 * 3 2 1 5 5 C 1.38238 * 120.00091 * 180.25145 * 4 3 2 6 6 C 1.50698 * 119.93057 * 179.76417 * 5 4 3 7 7 C 1.50695 * 109.47462 * 269.72639 * 6 5 4 8 8 O 1.21280 * 119.99679 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00178 * 179.97438 * 7 6 5 10 10 C 1.47022 * 125.65138 * 359.97438 * 9 7 6 11 11 C 1.54322 * 107.27482 * 178.98361 * 10 9 7 12 12 C 1.55157 * 102.93912 * 337.80443 * 11 10 9 13 13 O 1.42900 * 111.00520 * 277.38901 * 12 11 10 14 14 C 1.50702 * 111.00344 * 153.57728 * 12 11 10 15 15 H 1.08002 * 120.00299 * 241.45696 * 14 12 11 16 16 C 1.37884 * 119.99942 * 61.17254 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.47424 * 125.64952 * 180.02562 * 9 7 6 23 23 C 1.38258 * 120.14691 * 359.49153 * 5 4 3 24 24 C 1.38240 * 120.14401 * 0.27379 * 23 5 4 25 25 C 1.38570 * 120.00153 * 359.97438 * 24 23 5 26 26 O 1.35986 * 120.07709 * 180.02562 * 25 24 23 27 27 H 1.08994 * 109.47190 * 300.00548 * 1 2 3 28 28 H 1.09001 * 109.46492 * 60.00018 * 1 2 3 29 29 H 1.08994 * 109.47259 * 179.97438 * 1 2 3 30 30 H 1.08008 * 120.00224 * 359.97438 * 4 3 2 31 31 H 1.09005 * 109.47390 * 149.72076 * 6 5 4 32 32 H 1.09003 * 109.47159 * 29.72493 * 6 5 4 33 33 H 1.09003 * 109.88076 * 59.56192 * 10 9 7 34 34 H 1.09001 * 110.00358 * 298.47568 * 10 9 7 35 35 H 1.08995 * 110.71729 * 219.44160 * 11 10 9 36 36 H 1.08996 * 110.71909 * 96.16437 * 11 10 9 37 37 H 0.96704 * 113.99783 * 295.41666 * 13 12 11 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 39 39 H 1.09007 * 110.36818 * 85.24741 * 22 9 7 40 40 H 1.09006 * 110.37032 * 322.92419 * 22 9 7 41 41 H 1.07993 * 119.93026 * 180.25677 * 23 5 4 42 42 H 1.08001 * 120.00465 * 180.02562 * 24 23 5 43 43 H 0.96700 * 114.00793 * 89.99961 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 0.0049 5 6 1.9225 3.6057 -0.0004 6 6 1.1018 4.8696 -0.0005 7 6 0.8287 5.2912 -1.4212 8 8 1.2586 4.6306 -2.3430 9 7 0.1067 6.4023 -1.6675 10 6 -0.4723 7.2912 -0.6496 11 6 -1.1859 8.4384 -1.3953 12 6 -0.4878 8.4392 -2.7810 13 8 0.7426 9.1644 -2.7342 14 6 -1.3991 8.9954 -3.8446 15 1 -1.6962 8.3769 -4.6786 16 6 -1.8583 10.2921 -3.7499 17 7 -1.4965 11.0452 -2.7343 18 14 -2.9940 10.9790 -5.0643 19 1 -4.4056 10.7148 -4.6861 20 1 -2.7802 12.4434 -5.1872 21 1 -2.6992 10.3249 -6.3645 22 6 -0.2341 6.9272 -3.0023 23 6 3.3031 3.6798 0.0001 24 6 4.0604 2.5233 0.0001 25 6 3.4360 1.2863 0.0002 26 8 4.1795 0.1476 0.0008 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2147 2.3197 0.0082 31 1 1.6501 5.6589 0.5138 32 1 0.1572 4.6895 0.5130 33 1 0.3184 7.6953 -0.0173 34 1 -1.1900 6.7422 -0.0399 35 1 -1.0285 9.3877 -0.8836 36 1 -2.2501 8.2271 -1.4998 37 1 0.6365 10.1075 -2.5486 38 1 -1.8192 11.9576 -2.6680 39 1 -1.1340 6.4430 -3.3819 40 1 0.5970 6.7790 -3.6919 41 1 3.7909 4.6433 0.0002 42 1 5.1387 2.5839 0.0009 43 1 4.3943 -0.1816 0.8843 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592852509.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:25 Heat of formation + Delta-G solvation = -136.887354 kcal Electronic energy + Delta-G solvation = -26976.410107 eV Core-core repulsion = 22987.265360 eV Total energy + Delta-G solvation = -3989.144747 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.59643 -39.48178 -37.95565 -37.46645 -36.52232 -34.31569 -32.26450 -32.04530 -30.30920 -29.83617 -28.54750 -27.90284 -26.61712 -24.89115 -22.57274 -22.44325 -21.65865 -19.81663 -18.92201 -18.62376 -17.39051 -17.25897 -16.68368 -16.61150 -16.03126 -15.41677 -15.24752 -15.01535 -14.97376 -14.36462 -14.21805 -14.21330 -13.84601 -13.67219 -13.10315 -12.64586 -12.44255 -12.26175 -12.17903 -12.02047 -11.86056 -11.53403 -11.39702 -11.37767 -11.33129 -11.13564 -10.92081 -10.67400 -10.65491 -10.52301 -10.07632 -9.49821 -9.38786 -8.82904 -8.72939 -8.26908 -8.15620 -8.02477 -6.33077 -4.41337 1.09269 1.31436 3.03521 3.08234 3.16529 3.24597 3.28482 3.37092 3.72162 4.08944 4.23286 4.55789 4.73182 4.88455 4.91650 4.98623 5.02328 5.05099 5.21554 5.30519 5.40073 5.46836 5.50139 5.51588 5.68435 5.77792 5.80932 5.97374 6.03799 6.18998 6.25035 6.39769 6.48684 6.58864 6.62017 6.84951 6.92809 7.07249 7.26070 7.30434 7.62990 7.68882 7.96532 8.09994 8.59522 8.63361 9.26218 9.35258 10.74071 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.002583 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.954843 B =10837.940328 C =11183.565990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.103 3.897 4 C -0.180 4.180 5 C -0.025 4.025 6 C -0.101 4.101 7 C 0.524 3.476 8 O -0.546 6.546 9 N -0.607 5.607 10 C 0.097 3.903 11 C -0.136 4.136 12 C 0.247 3.753 13 O -0.583 6.583 14 C -0.536 4.536 15 H 0.065 0.935 16 C 0.073 3.927 17 N -0.895 5.895 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.121 3.879 23 C -0.125 4.125 24 C -0.104 4.104 25 C 0.067 3.933 26 O -0.487 6.487 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.130 0.870 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.381 0.619 38 H 0.268 0.732 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.129 0.871 42 H 0.135 0.865 43 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.774 -14.172 12.222 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.057 3.943 4 C -0.199 4.199 5 C -0.025 4.025 6 C -0.140 4.140 7 C 0.311 3.689 8 O -0.424 6.424 9 N -0.340 5.340 10 C -0.025 4.025 11 C -0.174 4.174 12 C 0.207 3.793 13 O -0.391 6.391 14 C -0.574 4.574 15 H 0.083 0.917 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.730 3.270 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.001 4.001 23 C -0.143 4.143 24 C -0.123 4.123 25 C 0.022 3.978 26 O -0.296 6.296 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.148 0.852 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.231 0.769 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.147 0.853 42 H 0.153 0.847 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 4.305 -15.144 11.077 19.250 hybrid contribution -1.252 1.210 0.040 1.742 sum 3.053 -13.934 11.117 18.085 Atomic orbital electron populations 1.23087 0.78512 1.03876 1.01571 1.86118 1.21210 1.26271 1.88775 1.19349 0.91688 0.84708 0.98540 1.20963 0.99967 0.91308 1.07619 1.19159 0.93592 0.93174 0.96618 1.20678 1.01306 0.96159 0.95892 1.19938 0.78246 0.80059 0.90627 1.90702 1.51772 1.53578 1.46331 1.48625 1.51557 1.24235 1.09613 1.22204 0.96747 0.92317 0.91271 1.23168 0.99250 0.96190 0.98841 1.19611 0.82350 0.86002 0.91337 1.86139 1.32539 1.25673 1.94779 1.21449 1.28910 0.98264 1.08800 0.91724 1.24992 0.95716 0.96636 0.95671 1.69716 1.45143 1.08913 1.29659 0.86413 0.80567 0.78124 0.81875 1.20475 1.21004 1.19669 1.22366 0.99856 0.94630 0.83243 1.20824 0.92900 0.98388 1.02228 1.21175 1.00439 0.90737 0.99930 1.17703 0.86077 0.86509 1.07497 1.84909 1.71825 1.39887 1.32938 0.92685 0.92407 0.88242 0.85196 0.87779 0.88239 0.92338 0.92872 0.89459 0.91385 0.76919 0.92202 0.91110 0.91154 0.85343 0.84682 0.76362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.90 10.28 -34.23 -0.35 -4.25 16 3 C 0.10 1.38 6.70 -39.12 -0.26 1.12 16 4 C -0.18 -2.36 8.69 -39.46 -0.34 -2.70 16 5 C -0.02 -0.34 4.37 -104.62 -0.46 -0.79 16 6 C -0.10 -1.32 5.02 -29.04 -0.15 -1.46 16 7 C 0.52 9.55 7.84 -10.99 -0.09 9.46 16 8 O -0.55 -11.99 16.29 5.56 0.09 -11.90 16 9 N -0.61 -11.59 3.33 -170.52 -0.57 -12.16 16 10 C 0.10 1.65 6.49 -3.06 -0.02 1.63 16 11 C -0.14 -2.79 5.38 -24.90 -0.13 -2.93 16 12 C 0.25 5.81 0.88 -89.62 -0.08 5.73 16 13 O -0.58 -14.48 13.18 -35.23 -0.46 -14.94 16 14 C -0.54 -13.67 8.27 -34.44 -0.28 -13.95 16 15 H 0.06 1.66 7.79 -52.49 -0.41 1.25 16 16 C 0.07 1.82 5.27 -17.82 -0.09 1.73 16 17 N -0.90 -22.42 10.73 55.43 0.59 -21.82 16 18 Si 0.90 19.83 29.54 -169.99 -5.02 14.80 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 C 0.12 2.65 6.08 -2.53 -0.02 2.64 16 23 C -0.13 -1.61 9.69 -39.57 -0.38 -1.99 16 24 C -0.10 -1.26 9.98 -39.46 -0.39 -1.66 16 25 C 0.07 0.88 6.72 -39.12 -0.26 0.61 16 26 O -0.49 -5.72 13.29 -34.20 -0.45 -6.17 16 27 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 28 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.13 1.48 6.30 -52.48 -0.33 1.15 16 31 H 0.10 1.18 8.08 -51.93 -0.42 0.76 16 32 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.88 7.54 -51.93 -0.39 1.49 16 36 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 37 H 0.38 9.43 7.51 45.56 0.34 9.77 16 38 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 39 H 0.07 1.52 8.03 -51.92 -0.42 1.10 16 40 H 0.07 1.67 8.04 -51.93 -0.42 1.25 16 41 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.38 2.51 9.06 45.56 0.41 2.93 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -31.70 361.79 -7.20 -38.90 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -4.51 Total: 13.44 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.97 Total: -1.35 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.03 Total: -33.98 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -1.18 Total: -37.26 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.70 -7.20 -38.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852509.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.988 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds