Wall clock time and date at job start Fri Apr 10 2020 14:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35986 * 117.00016 * 2 1 4 4 C 1.38570 * 120.07709 * 359.97438 * 3 2 1 5 5 C 1.38240 * 120.00153 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.14401 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.92197 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47462 * 89.99842 * 7 6 5 9 9 O 1.21280 * 119.99679 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00178 * 179.97438 * 8 7 6 11 11 C 1.47022 * 125.65138 * 359.97438 * 10 8 7 12 12 C 1.54322 * 107.27482 * 178.98361 * 11 10 8 13 13 C 1.55157 * 102.93912 * 337.80443 * 12 11 10 14 14 O 1.42900 * 111.00520 * 277.38901 * 13 12 11 15 15 C 1.50702 * 111.00344 * 153.57728 * 13 12 11 16 16 H 1.08002 * 120.00299 * 241.45696 * 15 13 12 17 17 C 1.37884 * 119.99942 * 61.17254 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.47424 * 125.64952 * 180.02562 * 10 8 7 24 24 C 1.38238 * 120.14691 * 0.27379 * 6 5 4 25 25 C 1.38563 * 120.00091 * 359.49153 * 24 6 5 26 26 O 1.35994 * 120.07364 * 180.25145 * 25 24 6 27 27 H 1.08997 * 109.46966 * 300.00435 * 1 2 3 28 28 H 1.08995 * 109.46674 * 60.00205 * 1 2 3 29 29 H 1.08996 * 109.47249 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.99382 * 0.02562 * 4 3 2 31 31 H 1.07993 * 119.92572 * 179.97438 * 5 4 3 32 32 H 1.09005 * 109.47390 * 329.99279 * 7 6 5 33 33 H 1.09003 * 109.47159 * 209.99696 * 7 6 5 34 34 H 1.09003 * 109.88076 * 59.56192 * 11 10 8 35 35 H 1.09001 * 110.00358 * 298.47568 * 11 10 8 36 36 H 1.08995 * 110.71729 * 219.44160 * 12 11 10 37 37 H 1.08996 * 110.71909 * 96.16437 * 12 11 10 38 38 H 0.96704 * 113.99783 * 295.41666 * 14 13 12 39 39 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 40 40 H 1.09007 * 110.36818 * 85.24741 * 23 10 8 41 41 H 1.09006 * 110.37032 * 322.92419 * 23 10 8 42 42 H 1.08008 * 119.99636 * 179.74444 * 24 6 5 43 43 H 0.96701 * 113.99931 * 270.23276 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 1.2933 2.3748 -0.0005 5 6 1.9225 3.6057 -0.0011 6 6 3.3031 3.6797 -0.0005 7 6 3.9839 5.0242 -0.0005 8 6 4.2102 5.4727 1.4202 9 8 3.8534 4.7700 2.3420 10 7 4.8091 6.6547 1.6664 11 6 5.2897 7.6003 0.6484 12 6 5.8765 8.8174 1.3941 13 6 5.1822 8.7436 2.7797 14 8 3.8813 9.3330 2.7328 15 6 6.0288 9.3942 3.8434 16 1 6.3903 8.8111 4.6774 17 6 6.3465 10.7326 3.7486 18 7 5.9062 11.4426 2.7329 19 14 7.4022 11.5371 5.0630 20 1 8.7218 10.8585 5.1221 21 1 7.5972 12.9716 4.7317 22 1 6.7265 11.4212 6.3803 23 6 5.0918 7.2131 3.0012 24 6 4.0604 2.5232 -0.0052 25 6 3.4360 1.2862 0.0003 26 8 4.1796 0.1475 0.0009 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.2147 2.3196 -0.0005 31 1 1.3344 4.5114 -0.0019 32 1 3.3543 5.7503 -0.5149 33 1 4.9423 4.9462 -0.5139 34 1 4.4604 7.9175 0.0161 35 1 6.0621 7.1313 0.0389 36 1 5.6184 9.7444 0.8823 37 1 6.9572 8.7212 1.4987 38 1 3.8859 10.2820 2.5472 39 1 6.1295 12.3843 2.6665 40 1 6.0383 6.8281 3.3809 41 1 4.2813 6.9769 3.6908 42 1 5.1388 2.5839 -0.0089 43 1 4.3947 -0.1822 -0.8824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601653198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:29 Heat of formation + Delta-G solvation = -136.504642 kcal Electronic energy + Delta-G solvation = -26823.760900 eV Core-core repulsion = 22834.632749 eV Total energy + Delta-G solvation = -3989.128152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.58557 -39.47377 -38.02492 -37.36529 -36.51168 -34.28529 -32.24623 -32.08348 -30.19414 -29.81308 -28.57231 -27.98987 -26.56131 -24.84877 -22.74960 -22.45597 -21.48283 -19.79008 -18.92092 -18.42333 -17.64946 -17.23450 -16.74258 -16.58096 -16.01485 -15.41873 -15.17306 -14.97881 -14.78863 -14.47769 -14.21357 -14.09149 -14.06208 -13.61447 -13.07233 -12.58291 -12.49499 -12.29513 -12.11392 -12.01455 -11.85644 -11.58277 -11.38155 -11.31714 -11.29605 -11.11240 -10.89456 -10.67985 -10.63610 -10.52359 -10.05162 -9.45620 -9.34540 -8.91111 -8.70899 -8.25398 -8.11446 -7.98458 -6.31105 -4.39347 1.15411 1.24040 3.04847 3.09005 3.20344 3.25156 3.28406 3.39122 3.73656 4.07466 4.25025 4.64098 4.69410 4.81425 4.90625 4.93889 5.04306 5.11356 5.19968 5.24268 5.30748 5.47032 5.52725 5.60309 5.71418 5.80030 5.85789 6.00320 6.05372 6.13143 6.28003 6.42505 6.49386 6.57721 6.65370 6.88046 6.96145 7.05434 7.28634 7.32672 7.63903 7.70763 7.98820 8.14423 8.62390 8.67244 9.28019 9.37036 10.76018 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.032520 B = 0.002428 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.794037 B =11530.329717 C =11662.574144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.098 3.902 4 C -0.193 4.193 5 C -0.071 4.071 6 C -0.078 4.078 7 C -0.095 4.095 8 C 0.522 3.478 9 O -0.546 6.546 10 N -0.608 5.608 11 C 0.098 3.902 12 C -0.136 4.136 13 C 0.247 3.753 14 O -0.583 6.583 15 C -0.536 4.536 16 H 0.064 0.936 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.903 3.097 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.120 3.880 24 C -0.091 4.091 25 C 0.074 3.926 26 O -0.486 6.486 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.381 0.619 39 H 0.269 0.731 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.134 0.866 43 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.381 -14.787 -12.270 20.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.052 3.948 4 C -0.212 4.212 5 C -0.089 4.089 6 C -0.079 4.079 7 C -0.135 4.135 8 C 0.310 3.690 9 O -0.424 6.424 10 N -0.341 5.341 11 C -0.025 4.025 12 C -0.174 4.174 13 C 0.207 3.793 14 O -0.392 6.392 15 C -0.574 4.574 16 H 0.082 0.918 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.730 3.270 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.001 4.001 24 C -0.110 4.110 25 C 0.028 3.972 26 O -0.294 6.294 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.231 0.769 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.152 0.848 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -6.737 -15.804 -11.131 20.471 hybrid contribution 0.603 1.300 -0.013 1.433 sum -6.134 -14.504 -11.144 19.292 Atomic orbital electron populations 1.23069 0.78659 1.03835 1.01395 1.86124 1.21084 1.26403 1.88809 1.19416 0.91715 0.84786 0.98888 1.21081 0.99958 0.91784 1.08343 1.20835 0.93851 0.97238 0.96996 1.19131 0.93312 0.93655 1.01754 1.20604 1.02456 0.94768 0.95649 1.20022 0.77841 0.80317 0.90803 1.90696 1.51499 1.53872 1.46382 1.48629 1.57802 1.18112 1.09556 1.22196 0.97663 0.91373 0.91271 1.23164 1.00175 0.95281 0.98819 1.19609 0.81397 0.86942 0.91345 1.86137 1.30188 1.28050 1.94781 1.21416 1.32108 0.95123 1.08801 0.91771 1.24990 0.95294 0.97060 0.95656 1.69708 1.45619 1.08530 1.29615 0.86474 0.80617 0.78061 0.81823 1.20035 1.21126 1.19990 1.22360 1.00235 0.94213 0.83304 1.21078 1.00400 0.90358 0.99141 1.17626 0.86071 0.86393 1.07061 1.84927 1.71857 1.39703 1.32941 0.92562 0.92721 0.88306 0.85075 0.85438 0.88042 0.88225 0.92395 0.92838 0.89493 0.91378 0.76948 0.92162 0.91098 0.91206 0.84794 0.76315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.71 10.28 -34.20 -0.35 -4.06 16 3 C 0.10 1.26 6.70 -39.12 -0.26 1.00 16 4 C -0.19 -2.28 9.04 -39.46 -0.36 -2.64 16 5 C -0.07 -0.90 9.69 -39.57 -0.38 -1.29 16 6 C -0.08 -1.05 4.37 -104.62 -0.46 -1.51 16 7 C -0.09 -1.26 5.02 -29.04 -0.15 -1.40 16 8 C 0.52 9.66 7.84 -10.99 -0.09 9.57 16 9 O -0.55 -12.15 16.29 5.56 0.09 -12.06 16 10 N -0.61 -11.77 3.33 -170.52 -0.57 -12.34 16 11 C 0.10 1.68 6.49 -3.06 -0.02 1.66 16 12 C -0.14 -2.82 5.38 -24.90 -0.13 -2.95 16 13 C 0.25 5.86 0.88 -89.62 -0.08 5.78 16 14 O -0.58 -14.56 13.18 -35.23 -0.46 -15.02 16 15 C -0.54 -13.77 8.27 -34.44 -0.28 -14.06 16 16 H 0.06 1.65 7.79 -52.49 -0.41 1.24 16 17 C 0.07 1.84 5.27 -17.82 -0.09 1.74 16 18 N -0.90 -22.56 10.73 55.43 0.59 -21.97 16 19 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 C 0.12 2.68 6.08 -2.53 -0.02 2.67 16 24 C -0.09 -1.21 9.63 -39.46 -0.38 -1.59 16 25 C 0.07 0.99 6.72 -39.12 -0.26 0.73 16 26 O -0.49 -5.96 13.29 -34.23 -0.45 -6.41 16 27 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 28 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.13 1.21 6.30 -52.49 -0.33 0.87 16 31 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 33 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.89 7.54 -51.93 -0.39 1.50 16 37 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 38 H 0.38 9.47 7.51 45.56 0.34 9.81 16 39 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 40 H 0.07 1.54 8.03 -51.92 -0.42 1.13 16 41 H 0.07 1.67 8.04 -51.93 -0.42 1.25 16 42 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 43 H 0.38 2.67 9.06 45.56 0.41 3.09 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -32.04 361.79 -7.20 -39.24 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -4.51 Total: 13.35 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.97 Total: -1.11 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.03 Total: -34.30 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -1.18 Total: -37.56 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.04 -7.20 -39.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601653198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.267 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds