Wall clock time and date at job start Fri Apr 10 2020 14:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35986 * 117.00016 * 2 1 4 4 C 1.38570 * 120.07709 * 359.97438 * 3 2 1 5 5 C 1.38240 * 120.00153 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.14401 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.92197 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47462 * 89.99842 * 7 6 5 9 9 O 1.21280 * 119.99679 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00178 * 179.97438 * 8 7 6 11 11 C 1.47022 * 125.65138 * 359.97438 * 10 8 7 12 12 C 1.54322 * 107.27482 * 178.98361 * 11 10 8 13 13 C 1.55157 * 102.93912 * 337.80443 * 12 11 10 14 14 O 1.42900 * 111.00520 * 277.38901 * 13 12 11 15 15 C 1.50702 * 111.00344 * 153.57728 * 13 12 11 16 16 H 1.08002 * 120.00299 * 241.45696 * 15 13 12 17 17 C 1.37884 * 119.99942 * 61.17254 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.47424 * 125.64952 * 180.02562 * 10 8 7 24 24 C 1.38238 * 120.14691 * 0.27379 * 6 5 4 25 25 C 1.38563 * 120.00091 * 359.49153 * 24 6 5 26 26 O 1.35994 * 120.07364 * 180.25145 * 25 24 6 27 27 H 1.08997 * 109.46966 * 300.00435 * 1 2 3 28 28 H 1.08995 * 109.46674 * 60.00205 * 1 2 3 29 29 H 1.08996 * 109.47249 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.99382 * 0.02562 * 4 3 2 31 31 H 1.07993 * 119.92572 * 179.97438 * 5 4 3 32 32 H 1.09005 * 109.47390 * 329.99279 * 7 6 5 33 33 H 1.09003 * 109.47159 * 209.99696 * 7 6 5 34 34 H 1.09003 * 109.88076 * 59.56192 * 11 10 8 35 35 H 1.09001 * 110.00358 * 298.47568 * 11 10 8 36 36 H 1.08995 * 110.71729 * 219.44160 * 12 11 10 37 37 H 1.08996 * 110.71909 * 96.16437 * 12 11 10 38 38 H 0.96704 * 113.99783 * 295.41666 * 14 13 12 39 39 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 40 40 H 1.09007 * 110.36818 * 85.24741 * 23 10 8 41 41 H 1.09006 * 110.37032 * 322.92419 * 23 10 8 42 42 H 1.08008 * 119.99636 * 179.74444 * 24 6 5 43 43 H 0.96701 * 113.99931 * 270.23276 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 1.2933 2.3748 -0.0005 5 6 1.9225 3.6057 -0.0011 6 6 3.3031 3.6797 -0.0005 7 6 3.9839 5.0242 -0.0005 8 6 4.2102 5.4727 1.4202 9 8 3.8534 4.7700 2.3420 10 7 4.8091 6.6547 1.6664 11 6 5.2897 7.6003 0.6484 12 6 5.8765 8.8174 1.3941 13 6 5.1822 8.7436 2.7797 14 8 3.8813 9.3330 2.7328 15 6 6.0288 9.3942 3.8434 16 1 6.3903 8.8111 4.6774 17 6 6.3465 10.7326 3.7486 18 7 5.9062 11.4426 2.7329 19 14 7.4022 11.5371 5.0630 20 1 8.7218 10.8585 5.1221 21 1 7.5972 12.9716 4.7317 22 1 6.7265 11.4212 6.3803 23 6 5.0918 7.2131 3.0012 24 6 4.0604 2.5232 -0.0052 25 6 3.4360 1.2862 0.0003 26 8 4.1796 0.1475 0.0009 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.2147 2.3196 -0.0005 31 1 1.3344 4.5114 -0.0019 32 1 3.3543 5.7503 -0.5149 33 1 4.9423 4.9462 -0.5139 34 1 4.4604 7.9175 0.0161 35 1 6.0621 7.1313 0.0389 36 1 5.6184 9.7444 0.8823 37 1 6.9572 8.7212 1.4987 38 1 3.8859 10.2820 2.5472 39 1 6.1295 12.3843 2.6665 40 1 6.0383 6.8281 3.3809 41 1 4.2813 6.9769 3.6908 42 1 5.1388 2.5839 -0.0089 43 1 4.3947 -0.1822 -0.8824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601653198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:29 Heat of formation + Delta-G solvation = -160.395649 kcal Electronic energy + Delta-G solvation = -26824.796892 eV Core-core repulsion = 22834.632749 eV Total energy + Delta-G solvation = -3990.164143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.54676 -40.88431 -39.16916 -38.65288 -37.57862 -36.03359 -34.20382 -33.15388 -31.47250 -31.03729 -30.07153 -28.99445 -27.67336 -26.48093 -23.94488 -23.64499 -22.54694 -21.53307 -20.27579 -19.40644 -19.09242 -18.53817 -18.09201 -17.64295 -16.99041 -16.86620 -16.70485 -16.41512 -15.98320 -15.77995 -15.43887 -15.30171 -15.02459 -14.90931 -14.62553 -14.07312 -13.77867 -13.59438 -13.28209 -13.26909 -13.20025 -13.00213 -12.95787 -12.62797 -12.61879 -12.44232 -12.27324 -12.16112 -11.96340 -11.81791 -11.57123 -11.25017 -10.89720 -10.62581 -10.13713 -9.83788 -9.53101 -9.04915 -8.23406 -6.38217 0.23181 0.28716 1.43467 1.45586 1.52201 1.68548 2.08148 2.30699 2.40752 2.66307 3.01671 3.20598 3.65665 3.74213 3.80870 3.91900 4.06377 4.08781 4.30454 4.34872 4.37627 4.39009 4.42478 4.46492 4.58983 4.62659 4.65994 4.71528 4.77373 4.92480 4.93916 5.13742 5.21041 5.22046 5.32591 5.48342 5.54762 5.58026 5.68796 5.78942 6.09407 6.27758 6.63762 6.69862 6.88237 7.21473 7.32196 7.41339 8.81860 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.032520 B = 0.002428 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.794037 B =11530.329717 C =11662.574144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.329 6.329 3 C 0.087 3.913 4 C -0.193 4.193 5 C -0.082 4.082 6 C -0.094 4.094 7 C -0.082 4.082 8 C 0.517 3.483 9 O -0.591 6.591 10 N -0.612 5.612 11 C 0.104 3.896 12 C -0.127 4.127 13 C 0.234 3.766 14 O -0.593 6.593 15 C -0.564 4.564 16 H 0.051 0.949 17 C 0.039 3.961 18 N -0.904 5.904 19 Si 0.957 3.043 20 H -0.272 1.272 21 H -0.278 1.278 22 H -0.280 1.280 23 C 0.125 3.875 24 C -0.101 4.101 25 C 0.059 3.941 26 O -0.500 6.500 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.155 0.845 31 H 0.140 0.860 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.378 0.622 39 H 0.271 0.729 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.142 0.858 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.529 -15.084 -14.048 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.041 3.959 4 C -0.212 4.212 5 C -0.100 4.100 6 C -0.095 4.095 7 C -0.121 4.121 8 C 0.308 3.692 9 O -0.473 6.473 10 N -0.344 5.344 11 C -0.018 4.018 12 C -0.165 4.165 13 C 0.194 3.806 14 O -0.401 6.401 15 C -0.602 4.602 16 H 0.070 0.930 17 C -0.163 4.163 18 N -0.543 5.543 19 Si 0.783 3.217 20 H -0.197 1.197 21 H -0.203 1.203 22 H -0.206 1.206 23 C 0.002 3.998 24 C -0.120 4.120 25 C 0.013 3.987 26 O -0.312 6.312 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.138 0.862 30 H 0.173 0.827 31 H 0.158 0.842 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.227 0.773 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.160 0.840 43 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -6.883 -16.108 -12.955 21.787 hybrid contribution 0.588 1.321 0.573 1.555 sum -6.296 -14.787 -12.382 20.288 Atomic orbital electron populations 1.23375 0.76545 1.05636 1.02269 1.86100 1.23339 1.26119 1.88687 1.19605 0.91906 0.85541 0.98806 1.21354 1.01221 0.91185 1.07437 1.21104 0.93929 0.98115 0.96835 1.19265 0.93811 0.93789 1.02609 1.20625 1.04585 0.95022 0.91861 1.21011 0.76306 0.79190 0.92678 1.90673 1.53156 1.55017 1.48407 1.48713 1.58245 1.18880 1.08570 1.22263 0.99358 0.89625 0.90510 1.22942 0.99548 0.96747 0.97306 1.19770 0.80834 0.87279 0.92756 1.86123 1.31213 1.27840 1.94947 1.21641 1.33226 0.95902 1.09467 0.93039 1.25567 0.96142 0.97294 0.97308 1.69764 1.45653 1.08677 1.30181 0.85631 0.79225 0.77493 0.79362 1.19678 1.20311 1.20579 1.22087 0.99022 0.93820 0.84870 1.21235 1.00935 0.90473 0.99331 1.17841 0.86678 0.86725 1.07422 1.84858 1.71809 1.39517 1.34988 0.92381 0.91059 0.86194 0.82703 0.84201 0.85512 0.85226 0.90309 0.88887 0.90523 0.92096 0.77284 0.91917 0.91363 0.94021 0.84041 0.73952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.44 10.28 -79.52 -0.82 -8.26 16 3 C 0.09 2.17 6.70 22.57 0.15 2.32 16 4 C -0.19 -4.27 9.04 22.35 0.20 -4.07 16 5 C -0.08 -1.94 9.69 22.27 0.22 -1.72 16 6 C -0.09 -2.38 4.37 -19.86 -0.09 -2.47 16 7 C -0.08 -1.93 5.02 29.10 0.15 -1.78 16 8 C 0.52 18.46 7.84 87.66 0.69 19.15 16 9 O -0.59 -26.43 16.29 -3.03 -0.05 -26.48 16 10 N -0.61 -22.94 3.33 -811.78 -2.70 -25.64 16 11 C 0.10 3.29 6.49 86.73 0.56 3.86 16 12 C -0.13 -5.15 5.38 31.78 0.17 -4.98 16 13 C 0.23 11.17 0.88 -10.15 -0.01 11.16 16 14 O -0.59 -29.96 13.18 -148.98 -1.96 -31.92 16 15 C -0.56 -29.46 8.27 25.60 0.21 -29.25 16 16 H 0.05 2.73 7.79 -2.91 -0.02 2.71 16 17 C 0.04 1.95 5.27 84.66 0.45 2.39 16 18 N -0.90 -45.26 10.73 21.45 0.23 -45.03 16 19 Si 0.96 40.81 29.54 68.60 2.03 42.83 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 C 0.13 5.67 6.08 86.86 0.53 6.20 16 24 C -0.10 -2.58 9.63 22.35 0.22 -2.36 16 25 C 0.06 1.53 6.72 22.57 0.15 1.68 16 26 O -0.50 -11.94 13.29 -79.61 -1.06 -13.00 16 27 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 28 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 29 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.16 2.50 6.30 -2.91 -0.02 2.48 16 31 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 32 H 0.13 2.38 8.08 -2.38 -0.02 2.36 16 33 H 0.13 2.29 8.08 -2.39 -0.02 2.27 16 34 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.08 3.26 7.54 -2.39 -0.02 3.24 16 37 H 0.06 2.52 8.03 -2.39 -0.02 2.50 16 38 H 0.38 19.03 7.51 -74.05 -0.56 18.47 16 39 H 0.27 12.98 8.31 -92.70 -0.77 12.21 16 40 H 0.07 3.06 8.03 -2.38 -0.02 3.04 16 41 H 0.04 2.08 8.04 -2.38 -0.02 2.06 16 42 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 43 H 0.40 5.29 9.06 -74.06 -0.67 4.62 16 Total: -1.00 -70.23 361.79 0.20 -70.03 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.17 Total: 36.02 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 4.71 Total: 1.45 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -2.47 Total: -70.67 kcal Atomic # 8 Polarization: -75.77 SS G_CDS: -3.89 Total: -79.66 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.83 kcal Total: -70.23 0.20 -70.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601653198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.367 kcal (2) G-P(sol) polarization free energy of solvation -70.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds