Wall clock time and date at job start Fri Apr 10 2020 14:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 117.00304 * 2 1 4 4 C 1.38759 * 120.05052 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.93741 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05899 * 0.02562 * 5 4 3 7 7 C 1.38238 * 120.11291 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.97484 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.47126 * 195.98151 * 8 7 6 10 10 O 1.42905 * 109.46611 * 315.97835 * 8 7 6 11 11 C 1.50702 * 109.47279 * 75.97486 * 8 7 6 12 12 O 1.21280 * 119.99732 * 251.92382 * 11 8 7 13 13 N 1.34776 * 119.99843 * 71.92452 * 11 8 7 14 14 C 1.47022 * 125.64798 * 4.77946 * 13 11 8 15 15 C 1.54334 * 107.26419 * 178.84516 * 14 13 11 16 16 C 1.55151 * 103.02415 * 338.14575 * 15 14 13 17 17 O 1.42907 * 111.00049 * 277.23241 * 16 15 14 18 18 C 1.50697 * 111.04370 * 153.39250 * 16 15 14 19 19 H 1.07997 * 120.00377 * 247.78449 * 18 16 15 20 20 C 1.37877 * 119.99722 * 67.77852 * 18 16 15 21 21 N 1.31520 * 120.00353 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 120.00139 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46898 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47341 * 119.99901 * 22 20 18 25 25 H 1.48494 * 109.47429 * 240.00606 * 22 20 18 26 26 C 1.47429 * 125.64812 * 185.08537 * 13 11 8 27 27 C 1.38168 * 120.05692 * 359.66974 * 7 6 5 28 28 H 1.09009 * 109.46865 * 299.99451 * 1 2 3 29 29 H 1.09000 * 109.47553 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47372 * 59.99287 * 1 2 3 31 31 H 1.08001 * 120.03035 * 359.97438 * 4 3 2 32 32 H 1.08009 * 119.96790 * 179.97438 * 5 4 3 33 33 H 1.08001 * 119.94145 * 179.97438 * 6 5 4 34 34 H 0.96696 * 114.00180 * 60.00413 * 10 8 7 35 35 H 1.08999 * 109.88209 * 298.39635 * 14 13 11 36 36 H 1.09006 * 109.87962 * 59.56127 * 14 13 11 37 37 H 1.09000 * 110.85149 * 219.66722 * 15 14 13 38 38 H 1.09006 * 110.50909 * 96.45208 * 15 14 13 39 39 H 0.96707 * 113.99575 * 292.18989 * 17 16 15 40 40 H 0.96999 * 119.99783 * 179.97438 * 21 20 18 41 41 H 1.09000 * 110.36370 * 322.93191 * 26 13 11 42 42 H 1.08993 * 110.36319 * 85.14575 * 26 13 11 43 43 H 1.08000 * 120.03268 * 180.30261 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0005 7 6 4.0560 2.5171 -0.0011 8 6 5.5608 2.5981 -0.0022 9 1 5.9765 1.6313 -0.2863 10 8 5.9835 3.5919 -0.9381 11 6 6.0451 2.9677 1.3761 12 8 6.4958 4.0743 1.5840 13 7 5.9773 2.0686 2.3778 14 6 5.5489 0.6684 2.2449 15 6 5.6603 0.0208 3.6414 16 6 6.6751 0.9388 4.3726 17 8 8.0189 0.5793 4.0455 18 6 6.4578 0.9060 5.8635 19 1 6.0949 1.7846 6.3758 20 6 6.7224 -0.2460 6.5734 21 7 7.1648 -1.3160 5.9496 22 14 6.4525 -0.2871 8.4214 23 1 5.9534 1.0348 8.8782 24 1 5.4531 -1.3343 8.7525 25 1 7.7357 -0.5944 9.1024 26 6 6.3143 2.3279 3.7895 27 6 3.4312 1.2848 0.0047 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5140 -0.8900 31 1 0.2128 2.3204 0.0005 32 1 1.3340 4.5114 0.0011 33 1 3.7922 4.6380 0.0005 34 1 5.6502 4.4792 -0.7469 35 1 4.5169 0.6280 1.8965 36 1 6.2000 0.1466 1.5434 37 1 6.0440 -0.9967 3.5677 38 1 4.6945 0.0343 4.1467 39 1 8.2902 -0.2828 4.3894 40 1 7.3512 -2.1263 6.4492 41 1 7.1685 3.0015 3.8579 42 1 5.4564 2.7497 4.3129 43 1 4.0206 0.3798 0.0084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844015078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:35 Heat of formation + Delta-G solvation = -138.663687 kcal Electronic energy + Delta-G solvation = -27977.107021 eV Core-core repulsion = 23987.885246 eV Total energy + Delta-G solvation = -3989.221775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.65561 -39.63404 -38.04465 -37.23050 -35.88712 -34.38960 -32.16595 -31.92129 -30.52754 -29.82448 -28.46084 -27.62071 -26.77613 -24.84337 -22.88220 -22.45707 -21.48822 -19.85217 -19.20600 -18.43236 -17.46469 -17.13548 -16.57830 -16.19843 -15.98571 -15.92333 -15.39291 -15.05774 -14.96542 -14.35953 -14.25212 -13.83104 -13.54589 -13.36824 -13.08971 -12.93434 -12.65726 -12.40938 -12.13129 -11.96053 -11.93954 -11.64807 -11.39808 -11.36048 -11.29308 -11.19240 -10.93568 -10.71440 -10.59857 -10.47744 -10.07495 -9.55704 -9.42853 -8.86371 -8.70222 -8.37421 -8.23166 -8.01365 -6.32661 -4.40323 1.05643 1.28194 2.84461 3.08496 3.16638 3.25834 3.29589 3.40446 3.57745 4.23899 4.42104 4.47951 4.58210 4.79271 4.83366 4.87934 4.91870 4.96794 5.06391 5.12195 5.24266 5.33761 5.49956 5.51198 5.74063 5.77872 5.84020 6.00230 6.08015 6.21413 6.23794 6.35033 6.40583 6.51159 6.60820 6.84137 6.92164 7.20228 7.27511 7.29936 7.44065 7.71006 7.95514 8.05188 8.48136 8.62353 9.28859 9.45870 10.75173 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013187 B = 0.004090 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.827608 B = 6844.511516 C = 8125.886166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.130 3.870 4 C -0.205 4.205 5 C -0.077 4.077 6 C -0.142 4.142 7 C -0.072 4.072 8 C 0.138 3.862 9 H 0.129 0.871 10 O -0.531 6.531 11 C 0.502 3.498 12 O -0.547 6.547 13 N -0.596 5.596 14 C 0.089 3.911 15 C -0.138 4.138 16 C 0.249 3.751 17 O -0.584 6.584 18 C -0.535 4.535 19 H 0.066 0.934 20 C 0.073 3.927 21 N -0.897 5.897 22 Si 0.904 3.096 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.118 3.882 27 C -0.134 4.134 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.382 0.618 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.386 0.614 40 H 0.269 0.731 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.303 2.472 -12.381 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.084 3.916 4 C -0.224 4.224 5 C -0.095 4.095 6 C -0.160 4.160 7 C -0.073 4.073 8 C 0.075 3.925 9 H 0.147 0.853 10 O -0.336 6.336 11 C 0.288 3.712 12 O -0.426 6.426 13 N -0.328 5.328 14 C -0.033 4.033 15 C -0.176 4.176 16 C 0.209 3.791 17 O -0.394 6.394 18 C -0.573 4.573 19 H 0.084 0.916 20 C -0.130 4.130 21 N -0.537 5.537 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.004 4.004 27 C -0.152 4.152 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.231 0.769 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.238 0.762 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.636 2.805 -12.874 18.255 hybrid contribution -0.800 -0.238 1.608 1.811 sum -13.435 2.567 -11.266 17.720 Atomic orbital electron populations 1.23064 0.78365 1.04034 1.01275 1.86095 1.21379 1.26687 1.88613 1.18913 0.92080 0.84297 0.96274 1.21260 1.00046 0.92403 1.08652 1.20860 0.94190 0.97126 0.97285 1.20820 0.94023 0.97909 1.03276 1.19955 0.94945 0.93291 0.99077 1.20646 0.89654 0.94456 0.87764 0.85315 1.86605 1.76379 1.20844 1.49772 1.20722 0.79407 0.84869 0.86161 1.90670 1.47006 1.21879 1.83077 1.48576 1.63672 1.11479 1.09100 1.22450 0.98382 0.81383 1.01118 1.23198 1.01650 1.01046 0.91748 1.19569 0.80286 0.87205 0.92089 1.86107 1.30388 1.42989 1.79927 1.21515 1.45220 0.98609 0.91994 0.91593 1.24988 0.93698 0.95001 0.99282 1.69570 1.45198 1.02612 1.36344 0.86347 0.77998 0.78249 0.84307 1.19574 1.20804 1.20712 1.22426 0.99747 0.99619 0.78562 1.20269 0.91655 0.97960 1.05329 0.92554 0.88152 0.92753 0.85383 0.85501 0.85739 0.76900 0.91895 0.92252 0.89762 0.91388 0.76211 0.92089 0.90943 0.91062 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.66 10.50 -19.43 -0.20 -3.86 16 3 C 0.13 1.59 6.69 -39.21 -0.26 1.33 16 4 C -0.20 -2.18 9.04 -39.43 -0.36 -2.54 16 5 C -0.08 -0.81 10.04 -39.61 -0.40 -1.21 16 6 C -0.14 -1.73 9.26 -39.56 -0.37 -2.10 16 7 C -0.07 -0.96 4.71 -104.65 -0.49 -1.46 16 8 C 0.14 2.06 3.03 -29.03 -0.09 1.97 16 9 H 0.13 1.78 7.64 -51.93 -0.40 1.39 16 10 O -0.53 -7.77 12.94 -54.86 -0.71 -8.48 16 11 C 0.50 9.50 7.08 -10.98 -0.08 9.42 16 12 O -0.55 -11.89 16.54 -14.07 -0.23 -12.13 16 13 N -0.60 -11.79 3.33 -170.51 -0.57 -12.35 16 14 C 0.09 1.61 5.91 -3.06 -0.02 1.59 16 15 C -0.14 -2.93 5.64 -24.89 -0.14 -3.07 16 16 C 0.25 5.99 0.89 -89.63 -0.08 5.91 16 17 O -0.58 -14.99 13.18 -35.23 -0.46 -15.46 16 18 C -0.54 -13.81 8.25 -34.44 -0.28 -14.09 16 19 H 0.07 1.70 7.77 -52.49 -0.41 1.29 16 20 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 21 N -0.90 -22.88 10.79 55.43 0.60 -22.29 16 22 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.12 2.64 6.10 -2.53 -0.02 2.63 16 27 C -0.13 -1.74 7.46 -39.43 -0.29 -2.03 16 28 H 0.06 0.38 7.66 -51.92 -0.40 -0.02 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 32 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 33 H 0.12 1.37 6.95 -52.49 -0.36 1.00 16 34 H 0.38 4.66 7.29 45.56 0.33 5.00 16 35 H 0.06 1.01 5.06 -51.93 -0.26 0.74 16 36 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16 37 H 0.08 1.87 7.85 -51.93 -0.41 1.46 16 38 H 0.07 1.45 8.03 -51.93 -0.42 1.03 16 39 H 0.39 9.97 6.93 45.56 0.32 10.29 16 40 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 41 H 0.07 1.74 7.99 -51.93 -0.41 1.32 16 42 H 0.07 1.54 8.02 -51.93 -0.42 1.13 16 43 H 0.14 1.68 7.21 -52.49 -0.38 1.30 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -30.52 352.25 -7.61 -38.14 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -4.34 Total: 16.86 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.98 Total: -0.71 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.03 Total: -34.64 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -1.61 Total: -39.92 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.52 -7.61 -38.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.528 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds