Wall clock time and date at job start Fri Apr 10 2020 14:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 117.00304 * 2 1 4 4 C 1.38759 * 120.05052 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.93741 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05899 * 0.02562 * 5 4 3 7 7 C 1.38238 * 120.11291 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.97484 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.47126 * 195.98151 * 8 7 6 10 10 O 1.42905 * 109.46611 * 315.97835 * 8 7 6 11 11 C 1.50702 * 109.47279 * 75.97486 * 8 7 6 12 12 O 1.21280 * 119.99732 * 251.92382 * 11 8 7 13 13 N 1.34776 * 119.99843 * 71.92452 * 11 8 7 14 14 C 1.47022 * 125.64798 * 4.77946 * 13 11 8 15 15 C 1.54334 * 107.26419 * 178.84516 * 14 13 11 16 16 C 1.55151 * 103.02415 * 338.14575 * 15 14 13 17 17 O 1.42907 * 111.00049 * 277.23241 * 16 15 14 18 18 C 1.50697 * 111.04370 * 153.39250 * 16 15 14 19 19 H 1.07997 * 120.00377 * 247.78449 * 18 16 15 20 20 C 1.37877 * 119.99722 * 67.77852 * 18 16 15 21 21 N 1.31520 * 120.00353 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 120.00139 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46898 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47341 * 119.99901 * 22 20 18 25 25 H 1.48494 * 109.47429 * 240.00606 * 22 20 18 26 26 C 1.47429 * 125.64812 * 185.08537 * 13 11 8 27 27 C 1.38168 * 120.05692 * 359.66974 * 7 6 5 28 28 H 1.09009 * 109.46865 * 299.99451 * 1 2 3 29 29 H 1.09000 * 109.47553 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47372 * 59.99287 * 1 2 3 31 31 H 1.08001 * 120.03035 * 359.97438 * 4 3 2 32 32 H 1.08009 * 119.96790 * 179.97438 * 5 4 3 33 33 H 1.08001 * 119.94145 * 179.97438 * 6 5 4 34 34 H 0.96696 * 114.00180 * 60.00413 * 10 8 7 35 35 H 1.08999 * 109.88209 * 298.39635 * 14 13 11 36 36 H 1.09006 * 109.87962 * 59.56127 * 14 13 11 37 37 H 1.09000 * 110.85149 * 219.66722 * 15 14 13 38 38 H 1.09006 * 110.50909 * 96.45208 * 15 14 13 39 39 H 0.96707 * 113.99575 * 292.18989 * 17 16 15 40 40 H 0.96999 * 119.99783 * 179.97438 * 21 20 18 41 41 H 1.09000 * 110.36370 * 322.93191 * 26 13 11 42 42 H 1.08993 * 110.36319 * 85.14575 * 26 13 11 43 43 H 1.08000 * 120.03268 * 180.30261 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0005 7 6 4.0560 2.5171 -0.0011 8 6 5.5608 2.5981 -0.0022 9 1 5.9765 1.6313 -0.2863 10 8 5.9835 3.5919 -0.9381 11 6 6.0451 2.9677 1.3761 12 8 6.4958 4.0743 1.5840 13 7 5.9773 2.0686 2.3778 14 6 5.5489 0.6684 2.2449 15 6 5.6603 0.0208 3.6414 16 6 6.6751 0.9388 4.3726 17 8 8.0189 0.5793 4.0455 18 6 6.4578 0.9060 5.8635 19 1 6.0949 1.7846 6.3758 20 6 6.7224 -0.2460 6.5734 21 7 7.1648 -1.3160 5.9496 22 14 6.4525 -0.2871 8.4214 23 1 5.9534 1.0348 8.8782 24 1 5.4531 -1.3343 8.7525 25 1 7.7357 -0.5944 9.1024 26 6 6.3143 2.3279 3.7895 27 6 3.4312 1.2848 0.0047 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5140 -0.8900 31 1 0.2128 2.3204 0.0005 32 1 1.3340 4.5114 0.0011 33 1 3.7922 4.6380 0.0005 34 1 5.6502 4.4792 -0.7469 35 1 4.5169 0.6280 1.8965 36 1 6.2000 0.1466 1.5434 37 1 6.0440 -0.9967 3.5677 38 1 4.6945 0.0343 4.1467 39 1 8.2902 -0.2828 4.3894 40 1 7.3512 -2.1263 6.4492 41 1 7.1685 3.0015 3.8579 42 1 5.4564 2.7497 4.3129 43 1 4.0206 0.3798 0.0084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844015078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:34 Heat of formation + Delta-G solvation = -160.850781 kcal Electronic energy + Delta-G solvation = -27978.069126 eV Core-core repulsion = 23987.885246 eV Total energy + Delta-G solvation = -3990.183879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.79270 -40.79868 -39.44887 -38.48619 -37.08547 -36.16334 -34.14663 -32.97396 -31.69680 -31.14128 -30.10785 -28.56723 -27.87840 -26.54634 -24.08745 -23.65147 -22.52729 -21.61230 -20.68674 -19.37270 -19.16944 -18.75120 -17.63314 -17.16199 -17.07498 -16.96421 -16.69733 -16.59989 -16.48861 -15.97861 -15.44442 -15.22716 -14.89548 -14.59707 -14.30170 -14.05689 -13.95650 -13.84561 -13.57803 -13.33672 -13.21327 -13.10149 -12.92039 -12.73968 -12.64128 -12.47958 -12.30353 -12.24096 -11.98980 -11.90865 -11.68480 -11.33012 -10.87067 -10.64637 -10.16539 -9.89876 -9.63340 -9.20783 -8.26227 -6.40873 0.14897 0.40686 1.40706 1.41508 1.45284 1.55075 1.89494 2.35037 2.39476 2.63628 2.98556 3.32515 3.37577 3.52408 3.77658 3.79336 3.98698 3.99844 4.10604 4.24116 4.29320 4.30549 4.33377 4.42931 4.50436 4.57019 4.63193 4.64290 4.76543 4.83562 4.94222 5.12878 5.19882 5.23223 5.37031 5.41799 5.45518 5.49437 5.67962 5.76072 6.03372 6.35180 6.42712 6.54135 6.63020 6.96386 7.30628 7.44345 8.80563 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013187 B = 0.004090 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.827608 B = 6844.511516 C = 8125.886166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.120 3.880 4 C -0.201 4.201 5 C -0.075 4.075 6 C -0.155 4.155 7 C -0.084 4.084 8 C 0.151 3.849 9 H 0.141 0.859 10 O -0.536 6.536 11 C 0.498 3.502 12 O -0.581 6.581 13 N -0.599 5.599 14 C 0.099 3.901 15 C -0.128 4.128 16 C 0.235 3.765 17 O -0.595 6.595 18 C -0.561 4.561 19 H 0.057 0.943 20 C 0.037 3.963 21 N -0.910 5.910 22 Si 0.962 3.038 23 H -0.273 1.273 24 H -0.274 1.274 25 H -0.280 1.280 26 C 0.123 3.877 27 C -0.149 4.149 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.131 0.869 34 H 0.391 0.609 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.382 0.618 40 H 0.273 0.727 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.496 2.229 -13.060 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.074 3.926 4 C -0.219 4.219 5 C -0.093 4.093 6 C -0.173 4.173 7 C -0.085 4.085 8 C 0.088 3.912 9 H 0.158 0.842 10 O -0.343 6.343 11 C 0.287 3.713 12 O -0.462 6.462 13 N -0.331 5.331 14 C -0.023 4.023 15 C -0.167 4.167 16 C 0.195 3.805 17 O -0.405 6.405 18 C -0.600 4.600 19 H 0.075 0.925 20 C -0.164 4.164 21 N -0.550 5.550 22 Si 0.787 3.213 23 H -0.198 1.198 24 H -0.200 1.200 25 H -0.206 1.206 26 C 0.001 3.999 27 C -0.168 4.168 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.088 0.912 31 H 0.173 0.827 32 H 0.173 0.827 33 H 0.149 0.851 34 H 0.242 0.758 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.233 0.767 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.848 2.555 -13.577 20.281 hybrid contribution -0.169 -0.146 1.805 1.819 sum -15.016 2.410 -11.772 19.232 Atomic orbital electron populations 1.23366 0.76302 1.05617 1.02373 1.86070 1.23586 1.26581 1.88529 1.19067 0.92068 0.85174 0.96282 1.21613 1.01475 0.91769 1.07085 1.21213 0.93719 0.98384 0.95972 1.21051 0.95007 0.97837 1.03442 1.19804 0.93713 0.94120 1.00889 1.20549 0.90998 0.94758 0.84853 0.84204 1.86582 1.76731 1.21566 1.49414 1.21563 0.78355 0.84103 0.87321 1.90643 1.48395 1.23274 1.83919 1.48618 1.63911 1.12379 1.08215 1.22445 1.00286 0.80174 0.99391 1.22987 1.00344 1.00077 0.93275 1.19754 0.80101 0.88654 0.91981 1.86094 1.31701 1.42790 1.79965 1.21730 1.46225 0.98740 0.93263 0.92460 1.25615 0.93337 0.94636 1.02850 1.69628 1.44966 1.02836 1.37543 0.85452 0.77876 0.78130 0.79817 1.19751 1.19974 1.20627 1.22191 0.98872 0.98320 0.80557 1.20359 0.92485 0.97844 1.06094 0.91827 0.86535 0.91165 0.82662 0.82675 0.85136 0.75803 0.89323 0.90765 0.90826 0.91753 0.76674 0.91751 0.93411 0.90799 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.05 10.50 -92.45 -0.97 -8.02 16 3 C 0.12 2.68 6.69 22.51 0.15 2.83 16 4 C -0.20 -3.66 9.04 22.37 0.20 -3.46 16 5 C -0.08 -1.38 10.04 22.25 0.22 -1.16 16 6 C -0.16 -3.51 9.26 22.28 0.21 -3.30 16 7 C -0.08 -2.15 4.71 -19.88 -0.09 -2.24 16 8 C 0.15 4.37 3.03 29.10 0.09 4.46 16 9 H 0.14 3.69 7.64 -2.39 -0.02 3.67 16 10 O -0.54 -15.20 12.94 -130.22 -1.68 -16.88 16 11 C 0.50 18.75 7.08 87.66 0.62 19.38 16 12 O -0.58 -25.55 16.54 15.73 0.26 -25.29 16 13 N -0.60 -23.66 3.33 -811.77 -2.70 -26.36 16 14 C 0.10 3.47 5.91 86.73 0.51 3.98 16 15 C -0.13 -5.44 5.64 31.78 0.18 -5.26 16 16 C 0.24 11.51 0.89 -10.15 -0.01 11.50 16 17 O -0.60 -31.24 13.18 -148.98 -1.96 -33.20 16 18 C -0.56 -29.41 8.25 25.60 0.21 -29.20 16 19 H 0.06 3.01 7.77 -2.91 -0.02 2.99 16 20 C 0.04 1.86 5.30 84.65 0.45 2.31 16 21 N -0.91 -46.42 10.79 21.45 0.23 -46.19 16 22 Si 0.96 40.84 29.54 68.60 2.03 42.87 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 C 0.12 5.65 6.10 86.85 0.53 6.18 16 27 C -0.15 -3.65 7.46 22.37 0.17 -3.48 16 28 H 0.06 0.67 7.66 -2.38 -0.02 0.65 16 29 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 0.61 7.66 -2.38 -0.02 0.59 16 31 H 0.16 1.89 6.30 -2.91 -0.02 1.87 16 32 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 33 H 0.13 2.69 6.95 -2.91 -0.02 2.67 16 34 H 0.39 9.27 7.29 -74.06 -0.54 8.73 16 35 H 0.09 2.70 5.06 -2.39 -0.01 2.68 16 36 H 0.07 2.40 8.06 -2.38 -0.02 2.38 16 37 H 0.07 3.26 7.85 -2.39 -0.02 3.25 16 38 H 0.06 2.74 8.03 -2.38 -0.02 2.72 16 39 H 0.38 20.18 6.93 -74.05 -0.51 19.66 16 40 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 41 H 0.05 2.38 7.99 -2.39 -0.02 2.36 16 42 H 0.07 3.29 8.02 -2.39 -0.02 3.27 16 43 H 0.14 3.21 7.21 -2.91 -0.02 3.19 16 Total: -1.00 -65.58 352.25 -0.24 -65.82 By element: Atomic # 1 Polarization: 43.39 SS G_CDS: 0.01 Total: 43.40 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 4.55 Total: 3.85 kcal Atomic # 7 Polarization: -70.08 SS G_CDS: -2.47 Total: -72.55 kcal Atomic # 8 Polarization: -79.04 SS G_CDS: -4.36 Total: -83.40 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -65.58 -0.24 -65.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.032 kcal (2) G-P(sol) polarization free energy of solvation -65.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds