Wall clock time and date at job start Fri Apr 10 2020 14:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00296 * 2 1 4 4 C 1.52999 * 109.47373 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47075 * 179.97438 * 4 3 2 6 6 N 1.46907 * 109.47020 * 184.43674 * 5 4 3 7 7 C 1.46902 * 110.99970 * 199.80953 * 6 5 4 8 8 C 1.52996 * 109.46937 * 167.49208 * 7 6 5 9 9 H 1.08998 * 109.47570 * 64.30922 * 8 7 6 10 10 O 1.42907 * 109.47141 * 304.31264 * 8 7 6 11 11 C 1.50696 * 109.47394 * 184.31196 * 8 7 6 12 12 H 1.08008 * 119.99763 * 0.02562 * 11 8 7 13 13 C 1.37877 * 120.00670 * 179.97438 * 11 8 7 14 14 N 1.31520 * 119.99466 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 120.00091 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.47178 * 60.00751 * 15 13 11 17 17 H 1.48509 * 109.46770 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47072 * 299.99990 * 15 13 11 19 19 C 1.46901 * 110.99520 * 75.85579 * 6 5 4 20 20 H 1.08998 * 110.01702 * 333.01939 * 19 6 5 21 21 C 1.53878 * 110.06752 * 94.42591 * 19 6 5 22 22 C 1.54162 * 108.70122 * 166.48968 * 21 19 6 23 23 S 1.83542 * 105.11412 * 332.10898 * 22 21 19 24 24 O 1.42097 * 109.48967 * 248.75717 * 23 22 21 25 25 O 1.42100 * 109.38843 * 115.41378 * 23 22 21 26 26 C 1.55053 * 110.02279 * 211.64001 * 19 6 5 27 27 H 1.09002 * 109.46815 * 60.00001 * 1 2 3 28 28 H 1.08992 * 109.47074 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46626 * 300.00181 * 1 2 3 30 30 H 1.08998 * 109.47406 * 59.99541 * 3 2 1 31 31 H 1.09000 * 109.47103 * 299.99830 * 3 2 1 32 32 H 1.08998 * 109.47452 * 59.99297 * 4 3 2 33 33 H 1.09000 * 109.46645 * 299.99838 * 4 3 2 34 34 H 1.09001 * 109.46894 * 64.44321 * 5 4 3 35 35 H 1.08992 * 109.47448 * 304.43745 * 5 4 3 36 36 H 1.08994 * 109.46950 * 287.49131 * 7 6 5 37 37 H 1.08994 * 109.46977 * 47.49057 * 7 6 5 38 38 H 0.96697 * 113.99465 * 300.00185 * 10 8 7 39 39 H 0.96998 * 119.99880 * 180.02562 * 14 13 11 40 40 H 1.08994 * 109.64815 * 286.34709 * 21 19 6 41 41 H 1.09003 * 109.64314 * 46.64340 * 21 19 6 42 42 H 1.08997 * 110.31907 * 91.00291 * 22 21 19 43 43 H 1.09006 * 110.31644 * 213.09136 * 22 21 19 44 44 H 1.09000 * 110.79112 * 316.49661 * 26 19 6 45 45 H 1.08996 * 110.78813 * 79.77281 * 26 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 7 5.6185 2.4680 -0.1091 7 6 6.2780 3.6982 0.3486 8 6 7.7765 3.4405 0.5187 9 1 8.2176 3.2077 -0.4505 10 8 7.9725 2.3392 1.4081 11 6 8.4362 4.6698 1.0885 12 1 7.8456 5.5471 1.3078 13 6 9.7935 4.6743 1.3309 14 7 10.5126 3.6058 1.0644 15 14 10.6112 6.1984 2.0365 16 1 10.0101 6.5164 3.3567 17 1 12.0657 5.9481 2.2018 18 1 10.4081 7.3422 1.1116 19 6 6.0204 2.1345 -1.4821 20 1 5.2185 1.5939 -1.9848 21 6 6.3586 3.4185 -2.2598 22 6 7.0918 3.0307 -3.5593 23 16 7.9349 1.4456 -3.1783 24 8 9.3406 1.6514 -3.1491 25 8 7.3852 0.4130 -3.9850 26 6 7.3104 1.2744 -1.4636 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8464 -0.8900 32 1 3.8568 0.6438 -0.8908 33 1 3.8574 0.6436 0.8891 34 1 3.9010 3.0948 0.9258 35 1 3.7744 3.1504 -0.8488 36 1 6.1264 4.4873 -0.3879 37 1 5.8515 4.0056 1.3034 38 1 7.6045 2.4769 2.2916 39 1 11.4674 3.6088 1.2352 40 1 5.4400 3.9526 -2.5026 41 1 7.0013 4.0561 -1.6527 42 1 6.3770 2.8933 -4.3706 43 1 7.8219 3.7954 -3.8245 44 1 8.0302 1.6719 -0.7481 45 1 7.0781 0.2335 -1.2386 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333137816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:49 Heat of formation + Delta-G solvation = -144.019480 kcal Electronic energy + Delta-G solvation = -26991.327507 eV Core-core repulsion = 23137.317439 eV Total energy + Delta-G solvation = -3854.010068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.29649 -38.01093 -36.68297 -35.67485 -35.26841 -34.25615 -32.15318 -31.68559 -29.54755 -28.49921 -26.85554 -25.10542 -24.73175 -23.39673 -21.87575 -20.73519 -19.61611 -18.46895 -17.32623 -16.70165 -16.48329 -16.34960 -16.15798 -15.41293 -15.27343 -15.08360 -14.72543 -14.61300 -14.35626 -14.06066 -13.86701 -13.48066 -13.04651 -12.72769 -12.54318 -12.38638 -12.02430 -11.93116 -11.81600 -11.78178 -11.66396 -11.62048 -11.17095 -11.09481 -11.02321 -10.95690 -10.91036 -10.58927 -10.43052 -10.35102 -10.06212 -9.90975 -9.83057 -9.04206 -8.58369 -8.23268 -7.82657 -6.04994 -4.24913 0.38662 2.81588 3.25850 3.32646 3.33151 3.50947 3.89557 4.16058 4.31987 4.40584 4.65898 4.77763 4.87833 4.92228 4.98919 5.05698 5.10175 5.16872 5.20760 5.23277 5.27073 5.32898 5.40648 5.45415 5.63993 5.68108 5.76239 5.86839 5.94854 5.98253 6.07729 6.17172 6.25943 6.42170 6.48573 6.71530 6.99041 7.29153 7.40682 7.63454 7.77344 8.11024 8.77329 9.38536 9.54300 10.98683 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010744 B = 0.004665 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.493703 B = 6000.550636 C = 7922.107554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.062 3.938 4 C -0.116 4.116 5 C 0.054 3.946 6 N -0.505 5.505 7 C 0.013 3.987 8 C 0.229 3.771 9 H 0.061 0.939 10 O -0.552 6.552 11 C -0.584 4.584 12 H 0.054 0.946 13 C 0.083 3.917 14 N -0.851 5.851 15 Si 0.888 3.112 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.092 3.908 20 H 0.091 0.909 21 C -0.160 4.160 22 C -0.585 4.585 23 S 2.369 3.631 24 O -0.931 6.931 25 O -0.952 6.952 26 C -0.579 4.579 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.346 0.654 39 H 0.264 0.736 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.127 0.873 43 H 0.136 0.864 44 H 0.181 0.819 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.265 -1.724 -4.819 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.015 4.015 4 C -0.154 4.154 5 C -0.074 4.074 6 N -0.227 5.227 7 C -0.113 4.113 8 C 0.171 3.829 9 H 0.078 0.922 10 O -0.354 6.354 11 C -0.622 4.622 12 H 0.073 0.927 13 C -0.125 4.125 14 N -0.486 5.486 15 Si 0.715 3.285 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.019 4.019 20 H 0.109 0.891 21 C -0.199 4.199 22 C -0.715 4.715 23 S 2.553 3.447 24 O -0.928 6.928 25 O -0.949 6.949 26 C -0.710 4.710 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.190 0.810 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.133 0.867 42 H 0.146 0.854 43 H 0.154 0.846 44 H 0.198 0.802 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.902 -3.198 -5.618 16.244 hybrid contribution -0.862 2.657 0.750 2.892 sum -15.765 -0.542 -4.868 16.508 Atomic orbital electron populations 1.22720 0.81310 1.02632 0.99805 1.87897 1.19449 1.28257 1.95385 1.22532 0.94630 0.84432 0.99895 1.21520 0.91540 0.97928 1.04385 1.22057 0.88637 0.95714 1.01028 1.62122 1.04987 1.36773 1.18818 1.23426 1.00106 0.88612 0.99203 1.19495 0.85655 0.86114 0.91599 0.92165 1.86518 1.82167 1.42704 1.24038 1.21566 0.93574 0.99925 1.47137 0.92738 1.25001 0.97359 0.95632 0.94481 1.70031 1.06784 1.27313 1.44461 0.86755 0.78560 0.83478 0.79661 1.20213 1.21139 1.20241 1.22225 0.95652 0.93640 0.90365 0.89101 1.22866 1.02658 1.00711 0.93684 1.30429 1.12976 1.22184 1.05889 1.09522 0.76769 0.78292 0.80087 1.93650 1.27143 1.85556 1.86418 1.93571 1.80717 1.53730 1.66922 1.31100 1.09008 1.09166 1.21715 0.94245 0.89733 0.94186 0.93342 0.93634 0.91029 0.90014 0.90620 0.94911 0.93914 0.91282 0.81030 0.92620 0.89872 0.86665 0.85427 0.84607 0.80169 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.54 10.70 -35.23 -0.38 -4.91 16 3 C 0.06 0.63 5.94 37.16 0.22 0.85 16 4 C -0.12 -1.34 5.72 -26.73 -0.15 -1.49 16 5 C 0.05 0.65 4.90 -3.82 -0.02 0.63 16 6 N -0.50 -7.56 4.15 -224.81 -0.93 -8.49 16 7 C 0.01 0.23 4.07 -3.82 -0.02 0.22 16 8 C 0.23 5.10 1.57 -27.89 -0.04 5.06 16 9 H 0.06 1.43 4.53 -51.93 -0.24 1.19 16 10 O -0.55 -12.89 11.59 -35.23 -0.41 -13.30 16 11 C -0.58 -14.76 8.76 -34.44 -0.30 -15.06 16 12 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16 13 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 14 N -0.85 -24.19 12.84 55.43 0.71 -23.48 16 15 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 C 0.09 1.30 2.33 -66.17 -0.15 1.14 16 20 H 0.09 1.08 6.53 -51.93 -0.34 0.75 16 21 C -0.16 -2.12 4.57 -25.67 -0.12 -2.24 16 22 C -0.59 -7.18 7.29 37.76 0.28 -6.91 16 23 S 2.37 37.16 6.14 -107.50 -0.66 36.50 16 24 O -0.93 -18.92 18.15 -57.71 -1.05 -19.97 16 25 O -0.95 -16.50 18.15 -57.71 -1.05 -17.55 16 26 C -0.58 -9.31 6.43 38.24 0.25 -9.06 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.86 6.83 -51.93 -0.35 0.51 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 0.87 7.69 -51.93 -0.40 0.47 16 35 H 0.03 0.35 8.00 -51.93 -0.42 -0.07 16 36 H 0.04 0.70 5.67 -51.93 -0.29 0.41 16 37 H 0.07 1.19 7.76 -51.93 -0.40 0.79 16 38 H 0.35 7.39 9.04 45.56 0.41 7.80 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.12 1.81 4.36 -51.93 -0.23 1.58 16 42 H 0.13 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.14 1.58 8.14 -51.93 -0.42 1.15 16 44 H 0.18 3.60 3.98 -51.93 -0.21 3.39 16 45 H 0.14 1.97 8.14 -51.93 -0.42 1.54 16 LS Contribution 362.43 15.07 5.46 5.46 Total: -1.00 -33.97 362.43 -8.60 -42.56 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -6.23 Total: 11.16 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 0.95 Total: -23.38 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: -0.22 Total: -31.97 kcal Atomic # 8 Polarization: -52.85 SS G_CDS: -2.88 Total: -55.73 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 37.16 SS G_CDS: -0.66 Total: 36.50 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.97 -8.60 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333137816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.456 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds