Wall clock time and date at job start Fri Apr 10 2020 14:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00296 * 2 1 4 4 C 1.52999 * 109.47373 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47075 * 179.97438 * 4 3 2 6 6 N 1.46907 * 109.47020 * 184.43674 * 5 4 3 7 7 C 1.46902 * 110.99970 * 199.80953 * 6 5 4 8 8 C 1.52996 * 109.46937 * 167.49208 * 7 6 5 9 9 H 1.08998 * 109.47570 * 64.30922 * 8 7 6 10 10 O 1.42907 * 109.47141 * 304.31264 * 8 7 6 11 11 C 1.50696 * 109.47394 * 184.31196 * 8 7 6 12 12 H 1.08008 * 119.99763 * 0.02562 * 11 8 7 13 13 C 1.37877 * 120.00670 * 179.97438 * 11 8 7 14 14 N 1.31520 * 119.99466 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 120.00091 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.47178 * 60.00751 * 15 13 11 17 17 H 1.48509 * 109.46770 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47072 * 299.99990 * 15 13 11 19 19 C 1.46901 * 110.99520 * 75.85579 * 6 5 4 20 20 H 1.08998 * 110.01702 * 333.01939 * 19 6 5 21 21 C 1.53878 * 110.06752 * 94.42591 * 19 6 5 22 22 C 1.54162 * 108.70122 * 166.48968 * 21 19 6 23 23 S 1.83542 * 105.11412 * 332.10898 * 22 21 19 24 24 O 1.42097 * 109.48967 * 248.75717 * 23 22 21 25 25 O 1.42100 * 109.38843 * 115.41378 * 23 22 21 26 26 C 1.55053 * 110.02279 * 211.64001 * 19 6 5 27 27 H 1.09002 * 109.46815 * 60.00001 * 1 2 3 28 28 H 1.08992 * 109.47074 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46626 * 300.00181 * 1 2 3 30 30 H 1.08998 * 109.47406 * 59.99541 * 3 2 1 31 31 H 1.09000 * 109.47103 * 299.99830 * 3 2 1 32 32 H 1.08998 * 109.47452 * 59.99297 * 4 3 2 33 33 H 1.09000 * 109.46645 * 299.99838 * 4 3 2 34 34 H 1.09001 * 109.46894 * 64.44321 * 5 4 3 35 35 H 1.08992 * 109.47448 * 304.43745 * 5 4 3 36 36 H 1.08994 * 109.46950 * 287.49131 * 7 6 5 37 37 H 1.08994 * 109.46977 * 47.49057 * 7 6 5 38 38 H 0.96697 * 113.99465 * 300.00185 * 10 8 7 39 39 H 0.96998 * 119.99880 * 180.02562 * 14 13 11 40 40 H 1.08994 * 109.64815 * 286.34709 * 21 19 6 41 41 H 1.09003 * 109.64314 * 46.64340 * 21 19 6 42 42 H 1.08997 * 110.31907 * 91.00291 * 22 21 19 43 43 H 1.09006 * 110.31644 * 213.09136 * 22 21 19 44 44 H 1.09000 * 110.79112 * 316.49661 * 26 19 6 45 45 H 1.08996 * 110.78813 * 79.77281 * 26 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 7 5.6185 2.4680 -0.1091 7 6 6.2780 3.6982 0.3486 8 6 7.7765 3.4405 0.5187 9 1 8.2176 3.2077 -0.4505 10 8 7.9725 2.3392 1.4081 11 6 8.4362 4.6698 1.0885 12 1 7.8456 5.5471 1.3078 13 6 9.7935 4.6743 1.3309 14 7 10.5126 3.6058 1.0644 15 14 10.6112 6.1984 2.0365 16 1 10.0101 6.5164 3.3567 17 1 12.0657 5.9481 2.2018 18 1 10.4081 7.3422 1.1116 19 6 6.0204 2.1345 -1.4821 20 1 5.2185 1.5939 -1.9848 21 6 6.3586 3.4185 -2.2598 22 6 7.0918 3.0307 -3.5593 23 16 7.9349 1.4456 -3.1783 24 8 9.3406 1.6514 -3.1491 25 8 7.3852 0.4130 -3.9850 26 6 7.3104 1.2744 -1.4636 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8464 -0.8900 32 1 3.8568 0.6438 -0.8908 33 1 3.8574 0.6436 0.8891 34 1 3.9010 3.0948 0.9258 35 1 3.7744 3.1504 -0.8488 36 1 6.1264 4.4873 -0.3879 37 1 5.8515 4.0056 1.3034 38 1 7.6045 2.4769 2.2916 39 1 11.4674 3.6088 1.2352 40 1 5.4400 3.9526 -2.5026 41 1 7.0013 4.0561 -1.6527 42 1 6.3770 2.8933 -4.3706 43 1 7.8219 3.7954 -3.8245 44 1 8.0302 1.6719 -0.7481 45 1 7.0781 0.2335 -1.2386 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333137816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:49 Heat of formation + Delta-G solvation = -173.527669 kcal Electronic energy + Delta-G solvation = -26992.607078 eV Core-core repulsion = 23137.317439 eV Total energy + Delta-G solvation = -3855.289639 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.48771 -38.79739 -38.05501 -37.08255 -36.92426 -35.26881 -34.13721 -32.79061 -30.78487 -29.92141 -27.75014 -26.52966 -25.86771 -24.46073 -23.08996 -22.04162 -20.85269 -19.75274 -18.95957 -17.95809 -17.69711 -17.21062 -17.05952 -16.66120 -16.61118 -16.36199 -16.24633 -16.04472 -15.57073 -15.19125 -15.03601 -14.63555 -14.52343 -14.11193 -13.74067 -13.41275 -13.31138 -13.21472 -13.06066 -12.95128 -12.89345 -12.79648 -12.77063 -12.66958 -12.40858 -12.08156 -12.02398 -11.93073 -11.84687 -11.62845 -11.39142 -11.15291 -10.81196 -10.55081 -10.50687 -9.99472 -9.01785 -8.06233 -6.30795 -0.84495 1.43656 1.43915 1.51880 1.61879 2.41823 2.68368 2.70598 3.07513 3.20156 3.25933 3.54469 3.66418 3.85870 4.00472 4.04076 4.11910 4.26300 4.34232 4.39177 4.49059 4.53963 4.56897 4.59050 4.62283 4.67614 4.71231 4.77369 4.79770 4.85012 4.89603 5.05840 5.17010 5.23617 5.24797 5.37669 5.70172 5.89534 6.07128 6.24363 6.27918 6.36585 6.82695 7.43720 7.72175 8.96601 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010744 B = 0.004665 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.493703 B = 6000.550636 C = 7922.107554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.064 3.936 4 C -0.111 4.111 5 C 0.057 3.943 6 N -0.519 5.519 7 C 0.030 3.970 8 C 0.225 3.775 9 H 0.044 0.956 10 O -0.568 6.568 11 C -0.587 4.587 12 H 0.061 0.939 13 C 0.029 3.971 14 N -0.895 5.895 15 Si 0.948 3.052 16 H -0.268 1.268 17 H -0.293 1.293 18 H -0.268 1.268 19 C 0.091 3.909 20 H 0.121 0.879 21 C -0.160 4.160 22 C -0.554 4.554 23 S 2.369 3.631 24 O -0.990 6.990 25 O -0.972 6.972 26 C -0.583 4.583 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.350 0.650 39 H 0.258 0.742 40 H 0.122 0.878 41 H 0.089 0.911 42 H 0.170 0.830 43 H 0.147 0.853 44 H 0.142 0.858 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.424 0.053 -5.677 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.013 4.013 4 C -0.149 4.149 5 C -0.071 4.071 6 N -0.242 5.242 7 C -0.097 4.097 8 C 0.167 3.833 9 H 0.061 0.939 10 O -0.371 6.371 11 C -0.626 4.626 12 H 0.079 0.921 13 C -0.174 4.174 14 N -0.532 5.532 15 Si 0.774 3.226 16 H -0.193 1.193 17 H -0.219 1.219 18 H -0.193 1.193 19 C -0.020 4.020 20 H 0.139 0.861 21 C -0.200 4.200 22 C -0.687 4.687 23 S 2.558 3.442 24 O -0.987 6.987 25 O -0.969 6.969 26 C -0.715 4.715 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.195 0.805 39 H 0.067 0.933 40 H 0.140 0.860 41 H 0.107 0.893 42 H 0.188 0.812 43 H 0.165 0.835 44 H 0.160 0.840 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.070 -1.442 -6.463 19.245 hybrid contribution 0.015 2.081 1.025 2.320 sum -18.055 0.639 -5.438 18.867 Atomic orbital electron populations 1.22903 0.79601 1.03623 1.00872 1.87851 1.21429 1.29195 1.95624 1.22525 0.93292 0.84250 1.01200 1.21436 0.92930 0.97414 1.03110 1.22094 0.86294 0.96244 1.02444 1.61910 1.07002 1.35667 1.19590 1.23011 0.96696 0.90030 0.99972 1.19484 0.88994 0.84467 0.90366 0.93893 1.86499 1.82747 1.43280 1.24552 1.22093 0.93728 1.01152 1.45605 0.92068 1.25796 0.98374 0.98079 0.95154 1.70194 1.06611 1.29582 1.46815 0.85793 0.77097 0.80400 0.79336 1.19343 1.21876 1.19278 1.22381 0.95205 0.94014 0.90428 0.86125 1.22879 1.03854 0.99987 0.93248 1.30235 1.13300 1.18207 1.06973 1.09290 0.75726 0.79684 0.79484 1.93572 1.31263 1.86807 1.87046 1.93532 1.80503 1.55848 1.66994 1.30989 1.09574 1.09951 1.20987 0.92994 0.88944 0.93235 0.92398 0.91865 0.91569 0.92112 0.90090 0.92288 0.92389 0.91170 0.80544 0.93277 0.85965 0.89297 0.81230 0.83520 0.83988 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -8.92 10.70 -148.98 -1.59 -10.51 16 3 C 0.06 1.11 5.94 71.98 0.43 1.54 16 4 C -0.11 -2.32 5.72 30.59 0.18 -2.14 16 5 C 0.06 1.17 4.90 86.30 0.42 1.59 16 6 N -0.52 -14.55 4.15 -865.16 -3.59 -18.14 16 7 C 0.03 1.01 4.07 86.30 0.35 1.36 16 8 C 0.22 10.10 1.57 29.85 0.05 10.15 16 9 H 0.04 2.11 4.53 -2.39 -0.01 2.10 16 10 O -0.57 -27.40 11.59 -148.98 -1.73 -29.12 16 11 C -0.59 -29.75 8.76 25.60 0.22 -29.53 16 12 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 13 C 0.03 1.56 5.40 84.65 0.46 2.01 16 14 N -0.90 -52.74 12.84 21.45 0.28 -52.46 16 15 Si 0.95 42.23 29.54 68.60 2.03 44.26 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 19 C 0.09 2.35 2.33 45.91 0.11 2.46 16 20 H 0.12 2.43 6.53 -2.39 -0.02 2.42 16 21 C -0.16 -3.71 4.57 31.28 0.14 -3.57 16 22 C -0.55 -11.84 7.29 72.38 0.53 -11.32 16 23 S 2.37 74.57 6.14 -56.49 -0.35 74.22 16 24 O -0.99 -42.31 18.15 -127.49 -2.31 -44.63 16 25 O -0.97 -33.24 18.15 -127.49 -2.31 -35.56 16 26 C -0.58 -19.07 6.43 72.69 0.47 -18.60 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 1.44 6.83 -2.39 -0.02 1.43 16 33 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.61 7.69 -2.39 -0.02 1.59 16 35 H 0.06 0.95 8.00 -2.39 -0.02 0.93 16 36 H 0.06 1.75 5.67 -2.39 -0.01 1.73 16 37 H 0.07 2.29 7.76 -2.39 -0.02 2.27 16 38 H 0.35 15.44 9.04 -74.06 -0.67 14.77 16 39 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 40 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.09 2.61 4.36 -2.39 -0.01 2.60 16 42 H 0.17 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.15 2.99 8.14 -2.38 -0.02 2.97 16 44 H 0.14 5.98 3.98 -2.39 -0.01 5.97 16 45 H 0.14 4.24 8.14 -2.39 -0.02 4.22 16 Total: -1.00 -76.26 362.43 -4.65 -80.91 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: 0.33 Total: 35.46 kcal Atomic # 6 Polarization: -49.03 SS G_CDS: 4.60 Total: -44.43 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -3.31 Total: -70.60 kcal Atomic # 8 Polarization: -111.87 SS G_CDS: -7.95 Total: -119.82 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: 74.57 SS G_CDS: -0.35 Total: 74.22 kcal Total: -76.26 -4.65 -80.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333137816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.613 kcal (2) G-P(sol) polarization free energy of solvation -76.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds