Wall clock time and date at job start Fri Apr 10 2020 14:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 117.00213 * 2 1 4 4 O 1.20833 * 119.99768 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00216 * 180.02562 * 3 2 1 6 6 H 1.08993 * 110.73104 * 61.63699 * 5 3 2 7 7 C 1.54939 * 110.66370 * 298.54093 * 5 3 2 8 8 C 1.54602 * 102.92025 * 204.15031 * 7 5 3 9 9 H 1.08994 * 110.31004 * 263.04027 * 8 7 5 10 10 O 1.42911 * 110.39032 * 140.91695 * 8 7 5 11 11 C 1.53993 * 105.14139 * 21.96130 * 8 7 5 12 12 N 1.47901 * 107.22163 * 1.12351 * 11 8 7 13 13 C 1.46904 * 110.99933 * 214.25891 * 12 11 8 14 14 C 1.50697 * 109.47140 * 69.87071 * 13 12 11 15 15 C 1.38304 * 119.93602 * 269.72665 * 14 13 12 16 16 C 1.38100 * 120.06998 * 179.72778 * 15 14 13 17 17 C 1.38878 * 119.93054 * 0.54823 * 16 15 14 18 18 O 1.35745 * 120.07037 * 179.75092 * 17 16 15 19 19 C 1.34829 * 117.00250 * 174.43878 * 18 17 16 20 20 H 1.08000 * 119.99728 * 5.06441 * 19 18 17 21 21 C 1.38649 * 119.99921 * 185.05124 * 19 18 17 22 22 N 1.31558 * 120.00366 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99807 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47134 * 60.00609 * 23 21 19 25 25 H 1.48506 * 109.47198 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47516 * 300.00439 * 23 21 19 27 27 C 1.38885 * 119.85896 * 359.72575 * 17 16 15 28 28 C 1.38092 * 119.93192 * 0.02562 * 27 17 16 29 29 H 1.09005 * 109.47286 * 300.00213 * 1 2 3 30 30 H 1.09000 * 109.47209 * 60.00007 * 1 2 3 31 31 H 1.09004 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.08995 * 110.72836 * 85.79919 * 7 5 3 33 33 H 1.09001 * 110.72933 * 322.50894 * 7 5 3 34 34 H 0.96696 * 113.99452 * 182.78279 * 10 8 7 35 35 H 1.08993 * 109.92031 * 120.57523 * 11 8 7 36 36 H 1.08997 * 109.91506 * 241.67658 * 11 8 7 37 37 H 1.09001 * 109.47612 * 189.87817 * 13 12 11 38 38 H 1.09005 * 109.47069 * 309.87811 * 13 12 11 39 39 H 1.08000 * 119.95845 * 0.02562 * 15 14 13 40 40 H 1.07999 * 120.03017 * 180.27819 * 16 15 14 41 41 H 0.97001 * 119.99984 * 179.97438 * 22 21 19 42 42 H 1.07998 * 120.02757 * 179.97438 * 27 17 16 43 43 H 1.08009 * 119.96498 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9765 0.8116 -0.8978 7 6 4.1490 0.6114 1.2726 8 6 5.5233 1.3032 1.4246 9 1 6.3087 0.6834 0.9921 10 8 5.8001 1.5633 2.8023 11 6 5.3963 2.6257 0.6461 12 7 4.0190 2.6880 0.1105 13 6 3.9922 3.3582 -1.1965 14 6 4.6498 2.4765 -2.2266 15 6 6.0081 2.5861 -2.4630 16 6 6.6146 1.7756 -3.4024 17 6 5.8571 0.8578 -4.1182 18 8 6.4495 0.0633 -5.0459 19 6 5.6811 -0.8833 -5.6216 20 1 4.6252 -0.9303 -5.3995 21 6 6.2465 -1.7961 -6.4988 22 7 7.5327 -1.7390 -6.7690 23 14 5.1817 -3.1072 -7.2969 24 1 4.1119 -2.4573 -8.0958 25 1 6.0196 -3.9521 -8.1854 26 1 4.5674 -3.9548 -6.2437 27 6 4.4923 0.7542 -3.8826 28 6 3.8927 1.5639 -2.9383 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.2716 -0.4617 1.1268 33 1 3.5172 0.8147 2.1372 34 1 6.6306 2.0347 2.9544 35 1 5.5733 3.4684 1.3142 36 1 6.1145 2.6445 -0.1735 37 1 2.9588 3.5476 -1.4867 38 1 4.5303 4.3039 -1.1310 39 1 6.5959 3.3029 -1.9088 40 1 7.6761 1.8586 -3.5832 41 1 7.9282 -2.3779 -7.3825 42 1 3.9006 0.0417 -4.4381 43 1 2.8313 1.4840 -2.7549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276643246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:18 Heat of formation + Delta-G solvation = -115.732594 kcal Electronic energy + Delta-G solvation = -27804.445690 eV Core-core repulsion = 23816.218281 eV Total energy + Delta-G solvation = -3988.227408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.87511 -39.56384 -38.70740 -36.99555 -36.38725 -35.47541 -32.57102 -31.91519 -30.59002 -29.51537 -28.59340 -27.44008 -25.75726 -24.81281 -22.85480 -22.25964 -21.06422 -20.84926 -19.97137 -18.13065 -17.92600 -17.22464 -17.11201 -16.61548 -16.40889 -15.88142 -15.12774 -14.80303 -14.54383 -14.53089 -14.11447 -13.88107 -13.73733 -13.57418 -13.29369 -13.08124 -12.84100 -12.65006 -12.60146 -12.19921 -11.98496 -11.80611 -11.62075 -11.36995 -11.23852 -11.17202 -11.00338 -10.84188 -10.81345 -10.72815 -10.53360 -10.25006 -10.11190 -9.46384 -8.92468 -8.44813 -8.31927 -7.33781 -6.55099 -4.14296 2.03059 2.09217 2.25652 2.57226 3.07484 3.08193 3.11304 3.88530 3.90507 4.11316 4.38032 4.44530 4.53243 4.90228 4.98715 4.99813 5.02853 5.09557 5.11896 5.21658 5.25935 5.29957 5.35175 5.43873 5.53202 5.65888 5.66662 5.69104 5.85683 5.90670 6.04571 6.07832 6.24345 6.34574 6.53657 6.64011 6.73948 6.89032 6.94542 7.11316 7.22203 7.30904 7.48088 7.65687 7.82656 7.89082 8.90141 9.57561 10.62259 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012758 B = 0.003874 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.225697 B = 7225.903359 C = 8201.570485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.475 3.525 4 O -0.490 6.490 5 C 0.060 3.940 6 H 0.117 0.883 7 C -0.102 4.102 8 C 0.097 3.903 9 H 0.072 0.928 10 O -0.561 6.561 11 C -0.002 4.002 12 N -0.484 5.484 13 C 0.097 3.903 14 C -0.230 4.230 15 C -0.063 4.063 16 C -0.192 4.192 17 C 0.158 3.842 18 O -0.173 6.173 19 C -0.394 4.394 20 H 0.092 0.908 21 C 0.042 3.958 22 N -0.860 5.860 23 Si 0.941 3.059 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 C -0.231 4.231 28 C -0.062 4.062 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.379 0.621 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.272 0.728 42 H 0.128 0.872 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.645 4.370 14.080 16.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.317 3.683 4 O -0.375 6.375 5 C -0.049 4.049 6 H 0.134 0.866 7 C -0.140 4.140 8 C 0.037 3.963 9 H 0.090 0.910 10 O -0.366 6.366 11 C -0.130 4.130 12 N -0.208 5.208 13 C -0.030 4.030 14 C -0.232 4.232 15 C -0.082 4.082 16 C -0.211 4.211 17 C 0.103 3.897 18 O -0.076 6.076 19 C -0.470 4.470 20 H 0.110 0.890 21 C -0.163 4.163 22 N -0.494 5.494 23 Si 0.765 3.235 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.251 4.251 28 C -0.081 4.081 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.226 0.774 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.146 0.854 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.396 4.534 14.255 16.687 hybrid contribution 0.225 -0.706 -1.266 1.467 sum -7.171 3.828 12.989 15.323 Atomic orbital electron populations 1.23244 0.76474 1.03599 1.02431 1.86514 1.23248 1.33471 1.84332 1.23295 0.91250 0.81348 0.72439 1.90638 1.66633 1.36211 1.44063 1.22577 0.88179 0.92474 1.01655 0.86568 1.22404 0.95322 0.99904 0.96411 1.22628 0.97051 0.94696 0.81918 0.91031 1.86529 1.45322 1.80262 1.24513 1.23784 0.90758 0.98698 0.99739 1.64878 1.19702 1.11808 1.24428 1.21165 1.01233 0.95724 0.84907 1.19886 0.94706 1.04174 1.04419 1.20519 0.93563 0.97613 0.96532 1.20221 0.99635 1.00557 1.00726 1.19396 0.91163 0.90821 0.88324 1.83976 1.38295 1.40267 1.45031 1.21293 0.92563 1.07995 1.25182 0.89039 1.25301 0.96395 0.97896 0.96749 1.70023 1.10553 1.35649 1.33142 0.85780 0.78984 0.79600 0.79110 1.19428 1.20168 1.19380 1.21160 0.95158 1.05075 1.03661 1.20607 0.97884 0.94798 0.94786 0.92029 0.91926 0.88127 0.89017 0.89402 0.77387 0.89341 0.91284 0.89812 0.90229 0.87035 0.86422 0.91815 0.85429 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.78 10.55 -39.24 -0.41 -5.19 16 3 C 0.48 7.04 7.13 36.00 0.26 7.30 16 4 O -0.49 -8.25 15.45 -18.76 -0.29 -8.54 16 5 C 0.06 0.84 2.34 -66.78 -0.16 0.69 16 6 H 0.12 1.78 4.86 -51.93 -0.25 1.53 16 7 C -0.10 -1.25 6.22 -24.87 -0.15 -1.41 16 8 C 0.10 1.07 4.35 -25.37 -0.11 0.96 16 9 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 10 O -0.56 -5.88 13.26 -35.23 -0.47 -6.35 16 11 C 0.00 -0.02 6.26 -2.75 -0.02 -0.04 16 12 N -0.48 -6.66 4.85 -225.20 -1.09 -7.76 16 13 C 0.10 1.37 5.44 -4.97 -0.03 1.35 16 14 C -0.23 -3.68 3.96 -104.58 -0.41 -4.10 16 15 C -0.06 -1.03 8.18 -39.61 -0.32 -1.35 16 16 C -0.19 -3.78 9.99 -39.40 -0.39 -4.17 16 17 C 0.16 3.62 6.65 -39.11 -0.26 3.36 16 18 O -0.17 -4.75 9.76 0.07 0.00 -4.75 16 19 C -0.39 -10.65 9.49 30.88 0.29 -10.36 16 20 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 21 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 22 N -0.86 -24.49 13.67 55.48 0.76 -23.73 16 23 Si 0.94 19.92 29.55 -169.99 -5.02 14.90 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 27 C -0.23 -4.79 9.17 -39.40 -0.36 -5.16 16 28 C -0.06 -1.09 7.49 -39.61 -0.30 -1.39 16 29 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.12 7.99 -51.93 -0.41 0.71 16 34 H 0.38 2.28 9.11 45.56 0.41 2.69 16 35 H 0.09 0.91 7.96 -51.93 -0.41 0.50 16 36 H 0.07 0.80 4.87 -51.93 -0.25 0.54 16 37 H 0.08 1.28 7.42 -51.93 -0.39 0.90 16 38 H 0.08 1.01 8.02 -51.93 -0.42 0.60 16 39 H 0.11 1.49 7.18 -52.49 -0.38 1.11 16 40 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 41 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.13 2.68 5.64 -52.49 -0.30 2.38 16 43 H 0.10 1.67 7.95 -52.48 -0.42 1.26 16 LS Contribution 354.40 15.07 5.34 5.34 Total: -1.00 -32.19 354.40 -6.94 -39.13 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -4.75 Total: 8.82 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -1.00 Total: -11.88 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: -0.33 Total: -31.49 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -1.17 Total: -24.83 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.19 -6.94 -39.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276643246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.602 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds