Wall clock time and date at job start Fri Apr 10 2020 14:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 117.00213 * 2 1 4 4 O 1.20833 * 119.99768 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00216 * 180.02562 * 3 2 1 6 6 H 1.08993 * 110.73104 * 61.63699 * 5 3 2 7 7 C 1.54939 * 110.66370 * 298.54093 * 5 3 2 8 8 C 1.54602 * 102.92025 * 204.15031 * 7 5 3 9 9 H 1.08994 * 110.31004 * 263.04027 * 8 7 5 10 10 O 1.42911 * 110.39032 * 140.91695 * 8 7 5 11 11 C 1.53993 * 105.14139 * 21.96130 * 8 7 5 12 12 N 1.47901 * 107.22163 * 1.12351 * 11 8 7 13 13 C 1.46904 * 110.99933 * 214.25891 * 12 11 8 14 14 C 1.50697 * 109.47140 * 69.87071 * 13 12 11 15 15 C 1.38304 * 119.93602 * 269.72665 * 14 13 12 16 16 C 1.38100 * 120.06998 * 179.72778 * 15 14 13 17 17 C 1.38878 * 119.93054 * 0.54823 * 16 15 14 18 18 O 1.35745 * 120.07037 * 179.75092 * 17 16 15 19 19 C 1.34829 * 117.00250 * 174.43878 * 18 17 16 20 20 H 1.08000 * 119.99728 * 5.06441 * 19 18 17 21 21 C 1.38649 * 119.99921 * 185.05124 * 19 18 17 22 22 N 1.31558 * 120.00366 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99807 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47134 * 60.00609 * 23 21 19 25 25 H 1.48506 * 109.47198 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47516 * 300.00439 * 23 21 19 27 27 C 1.38885 * 119.85896 * 359.72575 * 17 16 15 28 28 C 1.38092 * 119.93192 * 0.02562 * 27 17 16 29 29 H 1.09005 * 109.47286 * 300.00213 * 1 2 3 30 30 H 1.09000 * 109.47209 * 60.00007 * 1 2 3 31 31 H 1.09004 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.08995 * 110.72836 * 85.79919 * 7 5 3 33 33 H 1.09001 * 110.72933 * 322.50894 * 7 5 3 34 34 H 0.96696 * 113.99452 * 182.78279 * 10 8 7 35 35 H 1.08993 * 109.92031 * 120.57523 * 11 8 7 36 36 H 1.08997 * 109.91506 * 241.67658 * 11 8 7 37 37 H 1.09001 * 109.47612 * 189.87817 * 13 12 11 38 38 H 1.09005 * 109.47069 * 309.87811 * 13 12 11 39 39 H 1.08000 * 119.95845 * 0.02562 * 15 14 13 40 40 H 1.07999 * 120.03017 * 180.27819 * 16 15 14 41 41 H 0.97001 * 119.99984 * 179.97438 * 22 21 19 42 42 H 1.07998 * 120.02757 * 179.97438 * 27 17 16 43 43 H 1.08009 * 119.96498 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9765 0.8116 -0.8978 7 6 4.1490 0.6114 1.2726 8 6 5.5233 1.3032 1.4246 9 1 6.3087 0.6834 0.9921 10 8 5.8001 1.5633 2.8023 11 6 5.3963 2.6257 0.6461 12 7 4.0190 2.6880 0.1105 13 6 3.9922 3.3582 -1.1965 14 6 4.6498 2.4765 -2.2266 15 6 6.0081 2.5861 -2.4630 16 6 6.6146 1.7756 -3.4024 17 6 5.8571 0.8578 -4.1182 18 8 6.4495 0.0633 -5.0459 19 6 5.6811 -0.8833 -5.6216 20 1 4.6252 -0.9303 -5.3995 21 6 6.2465 -1.7961 -6.4988 22 7 7.5327 -1.7390 -6.7690 23 14 5.1817 -3.1072 -7.2969 24 1 4.1119 -2.4573 -8.0958 25 1 6.0196 -3.9521 -8.1854 26 1 4.5674 -3.9548 -6.2437 27 6 4.4923 0.7542 -3.8826 28 6 3.8927 1.5639 -2.9383 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.2716 -0.4617 1.1268 33 1 3.5172 0.8147 2.1372 34 1 6.6306 2.0347 2.9544 35 1 5.5733 3.4684 1.3142 36 1 6.1145 2.6445 -0.1735 37 1 2.9588 3.5476 -1.4867 38 1 4.5303 4.3039 -1.1310 39 1 6.5959 3.3029 -1.9088 40 1 7.6761 1.8586 -3.5832 41 1 7.9282 -2.3779 -7.3825 42 1 3.9006 0.0417 -4.4381 43 1 2.8313 1.4840 -2.7549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276643246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:17 Heat of formation + Delta-G solvation = -139.659975 kcal Electronic energy + Delta-G solvation = -27805.483259 eV Core-core repulsion = 23816.218281 eV Total energy + Delta-G solvation = -3989.264977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.01152 -40.94058 -40.03199 -38.36136 -37.52274 -36.58482 -34.37195 -33.20210 -32.06751 -30.69197 -29.83963 -28.32600 -27.50902 -26.14992 -23.97437 -23.78046 -22.38724 -21.91888 -21.14675 -19.89689 -19.01328 -18.78867 -18.19484 -17.68998 -17.51316 -16.91387 -16.51047 -16.41047 -16.04085 -15.69277 -15.54462 -15.33587 -15.07151 -14.70987 -14.42419 -14.33407 -14.19728 -13.99394 -13.75411 -13.52280 -13.10358 -13.03329 -12.83411 -12.76018 -12.60382 -12.43480 -12.37469 -12.20087 -12.16663 -11.99140 -11.80274 -11.35390 -11.23222 -10.96884 -10.80449 -9.84409 -9.53556 -8.99793 -8.49276 -6.17499 0.49134 0.56112 1.11263 1.34650 1.44110 1.50086 1.57861 2.16041 2.72113 2.96318 3.11087 3.24209 3.45646 3.47023 3.59723 3.89303 3.93045 3.94991 4.04197 4.12280 4.23295 4.28696 4.31562 4.34243 4.43187 4.50700 4.65100 4.68052 4.72586 4.76617 4.85287 4.93714 5.00646 5.04511 5.11558 5.18554 5.30751 5.46892 5.53531 5.64996 5.74873 5.90222 5.99361 6.11318 6.71822 6.90764 6.95474 7.73684 8.73003 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012758 B = 0.003874 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.225697 B = 7225.903359 C = 8201.570485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.475 3.525 4 O -0.515 6.515 5 C 0.059 3.941 6 H 0.102 0.898 7 C -0.103 4.103 8 C 0.101 3.899 9 H 0.079 0.921 10 O -0.572 6.572 11 C -0.002 4.002 12 N -0.490 5.490 13 C 0.101 3.899 14 C -0.199 4.199 15 C -0.048 4.048 16 C -0.197 4.197 17 C 0.121 3.879 18 O -0.227 6.227 19 C -0.415 4.415 20 H 0.100 0.900 21 C -0.018 4.018 22 N -0.917 5.917 23 Si 1.014 2.986 24 H -0.259 1.259 25 H -0.271 1.271 26 H -0.257 1.257 27 C -0.238 4.238 28 C -0.060 4.060 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.131 0.869 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.399 0.601 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.155 0.845 40 H 0.119 0.881 41 H 0.273 0.727 42 H 0.116 0.884 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.692 5.350 16.181 18.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.317 3.683 4 O -0.402 6.402 5 C -0.050 4.050 6 H 0.120 0.880 7 C -0.141 4.141 8 C 0.042 3.958 9 H 0.096 0.904 10 O -0.380 6.380 11 C -0.129 4.129 12 N -0.214 5.214 13 C -0.026 4.026 14 C -0.201 4.201 15 C -0.066 4.066 16 C -0.216 4.216 17 C 0.070 3.930 18 O -0.133 6.133 19 C -0.491 4.491 20 H 0.117 0.883 21 C -0.216 4.216 22 N -0.554 5.554 23 Si 0.833 3.167 24 H -0.184 1.184 25 H -0.195 1.195 26 H -0.181 1.181 27 C -0.257 4.257 28 C -0.079 4.079 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.149 0.851 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.249 0.751 35 H 0.125 0.875 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.124 0.876 39 H 0.173 0.827 40 H 0.137 0.863 41 H 0.082 0.918 42 H 0.134 0.866 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.458 5.549 16.412 19.279 hybrid contribution 0.423 -0.768 -1.588 1.814 sum -8.035 4.781 14.824 17.526 Atomic orbital electron populations 1.23556 0.74637 1.05712 1.02563 1.86505 1.25125 1.32754 1.83841 1.23488 0.91632 0.81382 0.71758 1.90622 1.67225 1.36970 1.45410 1.22569 0.87858 0.92772 1.01836 0.88040 1.22426 0.95960 1.00502 0.95214 1.22531 0.96417 0.94470 0.82395 0.90360 1.86493 1.46948 1.80724 1.23875 1.23892 0.89260 0.99656 1.00093 1.64889 1.21294 1.11632 1.23593 1.21203 1.00836 0.96240 0.84351 1.20271 0.94616 1.02363 1.02873 1.20915 0.93778 0.96915 0.95031 1.20497 0.99873 1.00250 1.00963 1.19931 0.92462 0.91573 0.89011 1.83945 1.39567 1.42081 1.47681 1.21734 0.93143 1.08548 1.25658 0.88290 1.26515 0.97808 1.00105 0.97178 1.70161 1.12714 1.37452 1.35095 0.84713 0.77196 0.76495 0.78268 1.18355 1.19535 1.18135 1.21174 0.94469 1.05617 1.04482 1.20752 0.98675 0.94449 0.94016 0.91574 0.92154 0.85112 0.88228 0.90016 0.75065 0.87539 0.90961 0.90736 0.87614 0.82711 0.86273 0.91753 0.86572 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.71 16 2 O -0.37 -9.25 10.55 -51.36 -0.54 -9.79 16 3 C 0.47 13.40 7.13 71.23 0.51 13.91 16 4 O -0.51 -16.62 15.45 21.94 0.34 -16.28 16 5 C 0.06 1.53 2.34 44.46 0.10 1.64 16 6 H 0.10 2.94 4.86 -2.39 -0.01 2.93 16 7 C -0.10 -2.31 6.22 31.80 0.20 -2.11 16 8 C 0.10 1.95 4.35 31.48 0.14 2.08 16 9 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 10 O -0.57 -10.16 13.26 -148.98 -1.98 -12.14 16 11 C 0.00 -0.03 6.26 86.45 0.54 0.51 16 12 N -0.49 -11.96 4.85 -866.39 -4.20 -16.16 16 13 C 0.10 2.51 5.44 85.56 0.47 2.98 16 14 C -0.20 -5.84 3.96 -19.83 -0.08 -5.92 16 15 C -0.05 -1.41 8.18 22.25 0.18 -1.23 16 16 C -0.20 -7.62 9.99 22.39 0.22 -7.40 16 17 C 0.12 5.72 6.65 22.58 0.15 5.87 16 18 O -0.23 -13.15 9.76 -22.67 -0.22 -13.37 16 19 C -0.41 -23.52 9.49 67.92 0.64 -22.88 16 20 H 0.10 5.18 5.20 -2.91 -0.02 5.16 16 21 C -0.02 -0.99 5.49 84.83 0.47 -0.52 16 22 N -0.92 -54.87 13.67 21.61 0.30 -54.58 16 23 Si 1.01 41.87 29.55 68.60 2.03 43.90 16 24 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 27 C -0.24 -10.04 9.17 22.39 0.21 -9.83 16 28 C -0.06 -2.06 7.49 22.25 0.17 -1.89 16 29 H 0.07 1.15 8.13 -2.38 -0.02 1.13 16 30 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 31 H 0.13 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.08 1.94 7.99 -2.39 -0.02 1.92 16 34 H 0.40 3.37 9.11 -74.06 -0.67 2.70 16 35 H 0.11 1.70 7.96 -2.39 -0.02 1.68 16 36 H 0.07 1.33 4.87 -2.39 -0.01 1.32 16 37 H 0.07 2.07 7.42 -2.39 -0.02 2.05 16 38 H 0.11 2.15 8.02 -2.38 -0.02 2.14 16 39 H 0.16 3.30 7.18 -2.91 -0.02 3.28 16 40 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 41 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.12 5.08 5.64 -2.91 -0.02 5.06 16 43 H 0.11 3.61 7.95 -2.91 -0.02 3.59 16 Total: -1.00 -73.65 354.40 1.21 -72.44 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.38 Total: 29.05 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 5.11 Total: -23.08 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -3.91 Total: -70.74 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -2.40 Total: -51.58 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -73.65 1.21 -72.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276643246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.219 kcal (2) G-P(sol) polarization free energy of solvation -73.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds