Wall clock time and date at job start Fri Apr 10 2020 14:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99886 * 2 1 4 4 H 1.09001 * 110.83082 * 333.64241 * 3 2 1 5 5 C 1.54988 * 110.90821 * 97.29684 * 3 2 1 6 6 O 1.44379 * 103.49315 * 155.22110 * 5 3 2 7 7 C 1.43745 * 106.97325 * 319.93537 * 6 5 3 8 8 C 1.54102 * 107.29286 * 26.51472 * 7 6 5 9 9 H 1.08995 * 110.48829 * 239.15986 * 8 7 6 10 10 N 1.46496 * 110.48473 * 116.64414 * 8 7 6 11 11 C 1.34783 * 120.00054 * 86.45628 * 10 8 7 12 12 O 1.21280 * 119.99708 * 0.27172 * 11 10 8 13 13 C 1.50697 * 120.00092 * 179.97438 * 11 10 8 14 14 C 1.50697 * 109.47165 * 179.97438 * 13 11 10 15 15 C 1.38295 * 119.93257 * 269.72945 * 14 13 11 16 16 C 1.38099 * 120.07177 * 179.72469 * 15 14 13 17 17 C 1.38883 * 119.92825 * 0.52401 * 16 15 14 18 18 O 1.35747 * 120.07110 * 179.72707 * 17 16 15 19 19 C 1.34836 * 117.00441 * 174.49173 * 18 17 16 20 20 H 1.08003 * 119.99161 * 5.05149 * 19 18 17 21 21 C 1.38650 * 120.00311 * 185.05729 * 19 18 17 22 22 N 1.31551 * 119.99951 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99884 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47197 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47262 * 120.00047 * 23 21 19 26 26 H 1.48504 * 109.47274 * 240.00171 * 23 21 19 27 27 C 1.38883 * 119.86254 * 359.75160 * 17 16 15 28 28 C 1.38098 * 119.92677 * 359.97438 * 27 17 16 29 29 H 1.08996 * 109.47242 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46950 * 300.00582 * 1 2 3 31 31 H 1.09010 * 109.46988 * 59.99819 * 1 2 3 32 32 H 1.09004 * 110.62325 * 36.71569 * 5 3 2 33 33 H 1.09010 * 110.75428 * 273.78450 * 5 3 2 34 34 H 1.08995 * 109.88084 * 267.08928 * 7 6 5 35 35 H 1.09005 * 109.87794 * 145.94034 * 7 6 5 36 36 H 0.97003 * 120.00235 * 266.44837 * 10 8 7 37 37 H 1.08998 * 109.47174 * 300.00412 * 13 11 10 38 38 H 1.09007 * 109.47157 * 59.99846 * 13 11 10 39 39 H 1.08002 * 119.96330 * 359.97438 * 15 14 13 40 40 H 1.08000 * 120.04137 * 180.27209 * 16 15 14 41 41 H 0.97006 * 120.00137 * 180.02562 * 22 21 19 42 42 H 1.07993 * 120.03433 * 180.02562 * 27 17 16 43 43 H 1.08002 * 119.96524 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3339 2.0309 -0.4523 5 6 2.4032 1.7360 1.4361 6 8 3.4533 2.7035 1.2223 7 6 4.2703 2.2059 0.1494 8 6 3.3791 1.3007 -0.7231 9 1 3.7868 0.2908 -0.7657 10 7 3.2484 1.8569 -2.0721 11 6 4.1703 1.5688 -3.0121 12 8 5.1055 0.8452 -2.7425 13 6 4.0356 2.1405 -4.3999 14 6 5.1866 1.6697 -5.2511 15 6 6.3497 2.4154 -5.3124 16 6 7.4083 1.9837 -6.0870 17 6 7.3000 0.8050 -6.8135 18 8 8.3368 0.3809 -7.5802 19 6 8.2100 -0.8259 -8.1681 20 1 7.2816 -1.3717 -8.0857 21 6 9.2713 -1.3662 -8.8782 22 7 10.4022 -0.7017 -8.9779 23 14 9.0956 -3.0384 -9.6919 24 1 7.7355 -3.5749 -9.4323 25 1 9.3017 -2.9005 -11.1561 26 1 10.1100 -3.9691 -9.1348 27 6 6.1286 0.0613 -6.7543 28 6 5.0756 0.4955 -5.9733 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 2.7763 0.8836 2.0039 33 1 1.5566 2.1950 1.9470 34 1 5.1017 1.6285 0.5537 35 1 4.6484 3.0376 -0.4450 36 1 2.4982 2.4325 -2.2888 37 1 3.0965 1.8063 -4.8409 38 1 4.0448 3.2292 -4.3469 39 1 6.4316 3.3342 -4.7508 40 1 8.3180 2.5642 -6.1312 41 1 11.1446 -1.0795 -9.4750 42 1 6.0415 -0.8559 -7.3177 43 1 4.1642 -0.0821 -5.9272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290378144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:32 Heat of formation + Delta-G solvation = -119.991763 kcal Electronic energy + Delta-G solvation = -26210.477974 eV Core-core repulsion = 22222.065874 eV Total energy + Delta-G solvation = -3988.412099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.65632 -39.40637 -38.63940 -37.58392 -36.48112 -34.63407 -32.46269 -31.57739 -30.35792 -30.10482 -28.91229 -26.98257 -26.48363 -25.08294 -23.31528 -21.95415 -21.90605 -20.93504 -20.07883 -17.94335 -17.78926 -17.57756 -16.89554 -16.66560 -16.25455 -15.72347 -15.30376 -15.20940 -14.84698 -14.57608 -14.44718 -14.24647 -14.08765 -13.63819 -13.54728 -13.29665 -12.92815 -12.70638 -12.63725 -12.54009 -12.17422 -12.00841 -11.78408 -11.47613 -11.35525 -11.24029 -10.83269 -10.73518 -10.56825 -10.46567 -10.38941 -10.08482 -9.74972 -9.28283 -9.19181 -8.78906 -8.11004 -7.12603 -6.41100 -3.99524 2.26814 2.29499 2.69755 2.85346 3.10118 3.15803 3.17439 3.22320 3.76879 3.92441 4.00327 4.29983 4.36748 4.56502 4.69085 4.82113 4.87378 4.90820 4.98173 5.11946 5.16257 5.21120 5.21769 5.27003 5.30899 5.35569 5.50459 5.53740 5.67525 5.76411 5.88434 6.21423 6.25774 6.30066 6.45891 6.63058 6.74211 6.95376 7.09518 7.27450 7.35601 7.40933 7.49233 7.87989 8.04418 8.25351 9.04814 9.75533 10.77153 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021940 B = 0.002288 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.930304 B =12232.245113 C =12728.884060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.049 3.951 4 H 0.085 0.915 5 C 0.030 3.970 6 O -0.371 6.371 7 C 0.039 3.961 8 C 0.114 3.886 9 H 0.114 0.886 10 N -0.732 5.732 11 C 0.510 3.490 12 O -0.514 6.514 13 C -0.078 4.078 14 C -0.172 4.172 15 C -0.059 4.059 16 C -0.191 4.191 17 C 0.157 3.843 18 O -0.178 6.178 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.232 4.232 28 C -0.056 4.056 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.398 0.602 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.117 0.883 41 H 0.269 0.731 42 H 0.126 0.874 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.335 6.053 16.979 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.288 6.288 3 C -0.010 4.010 4 H 0.103 0.897 5 C -0.048 4.048 6 O -0.289 6.289 7 C -0.039 4.039 8 C 0.008 3.992 9 H 0.132 0.868 10 N -0.387 5.387 11 C 0.297 3.703 12 O -0.387 6.387 13 C -0.118 4.118 14 C -0.173 4.173 15 C -0.078 4.078 16 C -0.211 4.211 17 C 0.103 3.897 18 O -0.082 6.082 19 C -0.466 4.466 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.498 5.498 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.201 1.201 27 C -0.252 4.252 28 C -0.074 4.074 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.233 0.767 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.126 0.874 40 H 0.135 0.865 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.022 5.594 17.095 26.915 hybrid contribution -0.768 -0.631 -0.560 1.141 sum -20.791 4.962 16.536 27.024 Atomic orbital electron populations 1.22885 0.80328 1.03383 1.00177 1.87980 1.20241 1.25792 1.94787 1.23919 0.94803 0.86069 0.96204 0.89663 1.23930 0.91497 0.93433 0.95935 1.88933 1.41913 1.44049 1.54053 1.23653 0.93610 0.98533 0.88138 1.22237 0.94238 1.00017 0.82712 0.86777 1.46114 1.29080 1.53066 1.10454 1.21158 0.81640 0.80700 0.86755 1.90763 1.31313 1.35449 1.81141 1.20401 0.99433 1.01337 0.90634 1.18614 0.95697 0.98788 1.04198 1.20394 0.92198 0.98166 0.97006 1.20156 1.00047 0.98042 1.02826 1.19387 0.87992 0.92805 0.89504 1.83976 1.35723 1.34609 1.53879 1.21378 1.00846 0.93232 1.31179 0.89034 1.25287 0.94374 0.99621 0.97308 1.70050 1.02947 1.37729 1.39109 0.85646 0.78757 0.80279 0.78732 1.19113 1.20184 1.20148 1.21105 0.94475 1.03285 1.06290 1.20505 0.97365 0.94407 0.95139 0.89105 0.93771 0.93639 0.90683 0.88374 0.90797 0.88752 0.76719 0.88948 0.88870 0.87381 0.86537 0.92116 0.85589 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.85 101.05 1.10 1.25 16 2 O -0.37 -3.19 10.47 -35.23 -0.37 -3.56 16 3 C 0.05 0.37 3.34 -24.73 -0.08 0.29 16 4 H 0.09 0.48 7.43 -51.93 -0.39 0.09 16 5 C 0.03 0.22 7.45 38.21 0.28 0.50 16 6 O -0.37 -3.68 11.52 -35.23 -0.41 -4.09 16 7 C 0.04 0.39 7.50 37.73 0.28 0.67 16 8 C 0.11 1.13 3.12 -66.40 -0.21 0.92 16 9 H 0.11 1.43 7.60 -51.93 -0.39 1.03 16 10 N -0.73 -6.95 5.05 -52.33 -0.26 -7.21 16 11 C 0.51 6.83 7.82 -10.98 -0.09 6.75 16 12 O -0.51 -9.50 15.74 5.56 0.09 -9.41 16 13 C -0.08 -0.95 5.83 -29.04 -0.17 -1.12 16 14 C -0.17 -2.98 4.38 -104.58 -0.46 -3.44 16 15 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 16 C -0.19 -4.22 9.99 -39.39 -0.39 -4.61 16 17 C 0.16 3.94 6.65 -39.10 -0.26 3.68 16 18 O -0.18 -5.24 9.76 0.04 0.00 -5.24 16 19 C -0.39 -11.18 9.49 30.88 0.29 -10.89 16 20 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -25.80 13.67 55.48 0.76 -25.04 16 23 Si 0.94 20.99 29.55 -169.99 -5.02 15.96 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 27 C -0.23 -5.27 9.17 -39.39 -0.36 -5.63 16 28 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.04 0.20 8.12 -51.92 -0.42 -0.22 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.96 7.93 -51.93 -0.41 0.55 16 36 H 0.40 2.47 8.35 -40.82 -0.34 2.13 16 37 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 38 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 43 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -35.58 367.16 -6.49 -42.06 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.88 Total: 4.58 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -0.92 Total: -13.59 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.49 Total: -32.25 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.69 Total: -22.30 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.58 -6.49 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290378144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.929 kcal (2) G-P(sol) polarization free energy of solvation -35.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds