Wall clock time and date at job start Fri Apr 10 2020 14:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99886 * 2 1 4 4 H 1.09001 * 110.83082 * 333.64241 * 3 2 1 5 5 C 1.54988 * 110.90821 * 97.29684 * 3 2 1 6 6 O 1.44379 * 103.49315 * 155.22110 * 5 3 2 7 7 C 1.43745 * 106.97325 * 319.93537 * 6 5 3 8 8 C 1.54102 * 107.29286 * 26.51472 * 7 6 5 9 9 H 1.08995 * 110.48829 * 239.15986 * 8 7 6 10 10 N 1.46496 * 110.48473 * 116.64414 * 8 7 6 11 11 C 1.34783 * 120.00054 * 86.45628 * 10 8 7 12 12 O 1.21280 * 119.99708 * 0.27172 * 11 10 8 13 13 C 1.50697 * 120.00092 * 179.97438 * 11 10 8 14 14 C 1.50697 * 109.47165 * 179.97438 * 13 11 10 15 15 C 1.38295 * 119.93257 * 269.72945 * 14 13 11 16 16 C 1.38099 * 120.07177 * 179.72469 * 15 14 13 17 17 C 1.38883 * 119.92825 * 0.52401 * 16 15 14 18 18 O 1.35747 * 120.07110 * 179.72707 * 17 16 15 19 19 C 1.34836 * 117.00441 * 174.49173 * 18 17 16 20 20 H 1.08003 * 119.99161 * 5.05149 * 19 18 17 21 21 C 1.38650 * 120.00311 * 185.05729 * 19 18 17 22 22 N 1.31551 * 119.99951 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99884 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47197 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47262 * 120.00047 * 23 21 19 26 26 H 1.48504 * 109.47274 * 240.00171 * 23 21 19 27 27 C 1.38883 * 119.86254 * 359.75160 * 17 16 15 28 28 C 1.38098 * 119.92677 * 359.97438 * 27 17 16 29 29 H 1.08996 * 109.47242 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46950 * 300.00582 * 1 2 3 31 31 H 1.09010 * 109.46988 * 59.99819 * 1 2 3 32 32 H 1.09004 * 110.62325 * 36.71569 * 5 3 2 33 33 H 1.09010 * 110.75428 * 273.78450 * 5 3 2 34 34 H 1.08995 * 109.88084 * 267.08928 * 7 6 5 35 35 H 1.09005 * 109.87794 * 145.94034 * 7 6 5 36 36 H 0.97003 * 120.00235 * 266.44837 * 10 8 7 37 37 H 1.08998 * 109.47174 * 300.00412 * 13 11 10 38 38 H 1.09007 * 109.47157 * 59.99846 * 13 11 10 39 39 H 1.08002 * 119.96330 * 359.97438 * 15 14 13 40 40 H 1.08000 * 120.04137 * 180.27209 * 16 15 14 41 41 H 0.97006 * 120.00137 * 180.02562 * 22 21 19 42 42 H 1.07993 * 120.03433 * 180.02562 * 27 17 16 43 43 H 1.08002 * 119.96524 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3339 2.0309 -0.4523 5 6 2.4032 1.7360 1.4361 6 8 3.4533 2.7035 1.2223 7 6 4.2703 2.2059 0.1494 8 6 3.3791 1.3007 -0.7231 9 1 3.7868 0.2908 -0.7657 10 7 3.2484 1.8569 -2.0721 11 6 4.1703 1.5688 -3.0121 12 8 5.1055 0.8452 -2.7425 13 6 4.0356 2.1405 -4.3999 14 6 5.1866 1.6697 -5.2511 15 6 6.3497 2.4154 -5.3124 16 6 7.4083 1.9837 -6.0870 17 6 7.3000 0.8050 -6.8135 18 8 8.3368 0.3809 -7.5802 19 6 8.2100 -0.8259 -8.1681 20 1 7.2816 -1.3717 -8.0857 21 6 9.2713 -1.3662 -8.8782 22 7 10.4022 -0.7017 -8.9779 23 14 9.0956 -3.0384 -9.6919 24 1 7.7355 -3.5749 -9.4323 25 1 9.3017 -2.9005 -11.1561 26 1 10.1100 -3.9691 -9.1348 27 6 6.1286 0.0613 -6.7543 28 6 5.0756 0.4955 -5.9733 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 2.7763 0.8836 2.0039 33 1 1.5566 2.1950 1.9470 34 1 5.1017 1.6285 0.5537 35 1 4.6484 3.0376 -0.4450 36 1 2.4982 2.4325 -2.2888 37 1 3.0965 1.8063 -4.8409 38 1 4.0448 3.2292 -4.3469 39 1 6.4316 3.3342 -4.7508 40 1 8.3180 2.5642 -6.1312 41 1 11.1446 -1.0795 -9.4750 42 1 6.0415 -0.8559 -7.3177 43 1 4.1642 -0.0821 -5.9272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290378144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:31 Heat of formation + Delta-G solvation = -147.586618 kcal Electronic energy + Delta-G solvation = -26211.674577 eV Core-core repulsion = 22222.065874 eV Total energy + Delta-G solvation = -3989.608702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.50231 -40.79685 -39.98046 -38.22781 -38.13868 -35.58778 -34.40050 -32.97954 -31.77535 -31.16940 -29.71906 -28.06937 -27.36884 -26.90769 -24.09144 -23.63107 -22.83933 -22.13229 -21.25964 -19.84320 -18.88715 -18.49841 -18.27190 -17.54403 -16.98672 -16.66313 -16.41644 -16.31494 -16.02428 -15.78804 -15.71801 -15.51870 -15.34856 -15.11616 -14.89011 -14.44227 -14.40386 -14.12081 -13.70044 -13.57354 -13.14540 -13.01045 -12.97891 -12.69264 -12.50440 -12.47556 -12.27580 -12.23592 -12.10201 -11.94944 -11.17421 -11.13664 -10.92930 -10.78695 -10.70088 -10.04131 -9.75548 -8.89656 -8.47755 -6.15803 0.62335 0.67232 1.33480 1.42164 1.52328 1.67991 2.03933 2.17256 2.46145 2.83863 3.11588 3.19642 3.27782 3.53093 3.65833 3.80339 3.85830 4.04064 4.07043 4.15231 4.16688 4.22462 4.43542 4.50329 4.55820 4.59620 4.64848 4.67421 4.71532 4.72268 4.73749 4.81713 4.88917 5.09824 5.14999 5.31186 5.39138 5.57216 5.61632 5.72345 5.78460 6.03032 6.13132 6.23806 6.55636 6.96971 7.31058 7.78584 8.76000 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021940 B = 0.002288 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.930304 B =12232.245113 C =12728.884060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.396 6.396 3 C 0.059 3.941 4 H 0.114 0.886 5 C 0.027 3.973 6 O -0.382 6.382 7 C 0.042 3.958 8 C 0.111 3.889 9 H 0.083 0.917 10 N -0.709 5.709 11 C 0.513 3.487 12 O -0.575 6.575 13 C -0.076 4.076 14 C -0.146 4.146 15 C -0.057 4.057 16 C -0.207 4.207 17 C 0.111 3.889 18 O -0.234 6.234 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.252 1.252 25 H -0.265 1.265 26 H -0.269 1.269 27 C -0.245 4.245 28 C -0.060 4.060 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.420 0.580 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.148 0.852 40 H 0.112 0.888 41 H 0.273 0.727 42 H 0.116 0.884 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.734 7.004 18.454 32.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.315 6.315 3 C 0.000 4.000 4 H 0.131 0.869 5 C -0.050 4.050 6 O -0.301 6.301 7 C -0.036 4.036 8 C 0.005 3.995 9 H 0.101 0.899 10 N -0.364 5.364 11 C 0.301 3.699 12 O -0.453 6.453 13 C -0.115 4.115 14 C -0.147 4.147 15 C -0.075 4.075 16 C -0.226 4.226 17 C 0.061 3.939 18 O -0.141 6.141 19 C -0.489 4.489 20 H 0.117 0.883 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.839 3.161 24 H -0.176 1.176 25 H -0.190 1.190 26 H -0.194 1.194 27 C -0.264 4.264 28 C -0.078 4.078 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.144 0.856 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.258 0.742 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.166 0.834 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.134 0.866 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -24.531 6.601 18.617 31.495 hybrid contribution 0.309 -0.735 -0.723 1.076 sum -24.222 5.866 17.894 30.681 Atomic orbital electron populations 1.23091 0.78562 1.04162 1.01624 1.87958 1.22242 1.26413 1.94904 1.23877 0.93815 0.86475 0.95809 0.86851 1.24111 0.91607 0.93131 0.96175 1.88923 1.42528 1.44743 1.53887 1.23523 0.93501 0.98253 0.88335 1.22168 0.95992 0.98366 0.82979 0.89871 1.45833 1.28667 1.52254 1.09616 1.21289 0.81218 0.79816 0.87576 1.90774 1.33943 1.38391 1.82195 1.20534 0.98383 1.03811 0.88750 1.19261 0.96676 0.96816 1.01975 1.20890 0.91294 0.99561 0.95717 1.20454 1.01441 0.97370 1.03354 1.19954 0.88395 0.94603 0.90929 1.83936 1.38080 1.35514 1.56555 1.21854 1.01620 0.93736 1.31707 0.88304 1.26614 0.93687 1.04116 0.97792 1.70194 1.04203 1.40291 1.41314 0.84514 0.79394 0.74420 0.77750 1.17571 1.18990 1.19423 1.21223 0.94984 1.02987 1.07196 1.20937 0.97435 0.95338 0.94115 0.88839 0.92049 0.92404 0.91339 0.85625 0.92141 0.88787 0.74185 0.85166 0.84712 0.83387 0.87024 0.91837 0.86621 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.85 113.37 1.23 1.38 16 2 O -0.40 -5.85 10.47 -148.98 -1.56 -7.41 16 3 C 0.06 0.71 3.34 31.89 0.11 0.81 16 4 H 0.11 0.71 7.43 -2.39 -0.02 0.69 16 5 C 0.03 0.32 7.45 72.66 0.54 0.87 16 6 O -0.38 -6.77 11.52 -148.98 -1.72 -8.48 16 7 C 0.04 0.79 7.50 72.35 0.54 1.33 16 8 C 0.11 1.99 3.12 45.98 0.14 2.13 16 9 H 0.08 2.07 7.60 -2.39 -0.02 2.05 16 10 N -0.71 -10.72 5.05 -437.85 -2.21 -12.93 16 11 C 0.51 11.89 7.82 87.65 0.69 12.57 16 12 O -0.58 -20.46 15.74 -3.03 -0.05 -20.50 16 13 C -0.08 -1.41 5.83 29.10 0.17 -1.24 16 14 C -0.15 -4.60 4.38 -19.84 -0.09 -4.69 16 15 C -0.06 -1.98 9.69 22.25 0.22 -1.77 16 16 C -0.21 -9.36 9.99 22.39 0.22 -9.14 16 17 C 0.11 5.88 6.65 22.58 0.15 6.03 16 18 O -0.23 -14.77 9.76 -22.76 -0.22 -15.00 16 19 C -0.41 -25.13 9.49 67.92 0.64 -24.49 16 20 H 0.10 5.57 5.20 -2.91 -0.02 5.56 16 21 C -0.03 -1.47 5.49 84.83 0.47 -1.01 16 22 N -0.92 -58.35 13.67 21.61 0.30 -58.06 16 23 Si 1.02 44.48 29.55 68.60 2.03 46.51 16 24 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 C -0.24 -11.36 9.17 22.39 0.21 -11.15 16 28 C -0.06 -2.19 9.69 22.25 0.22 -1.97 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.06 0.28 8.12 -2.38 -0.02 0.26 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.13 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.09 1.74 7.93 -2.38 -0.02 1.73 16 36 H 0.42 2.88 8.35 -92.71 -0.77 2.11 16 37 H 0.13 1.61 8.08 -2.39 -0.02 1.59 16 38 H 0.13 1.55 8.08 -2.38 -0.02 1.54 16 39 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 40 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 41 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 42 H 0.12 5.47 5.64 -2.91 -0.02 5.45 16 43 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -86.20 367.16 2.28 -83.92 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.26 Total: 22.27 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 5.45 Total: -30.32 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -1.92 Total: -70.98 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -3.55 Total: -51.39 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -86.20 2.28 -83.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290378144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.670 kcal (2) G-P(sol) polarization free energy of solvation -86.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds