Wall clock time and date at job start Fri Apr 10 2020 14:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00117 * 2 1 4 4 H 1.09002 * 110.82434 * 333.64201 * 3 2 1 5 5 C 1.55220 * 111.02490 * 97.35226 * 3 2 1 6 6 O 1.44383 * 103.56421 * 155.07348 * 5 3 2 7 7 C 1.43743 * 106.97488 * 320.01146 * 6 5 3 8 8 C 1.54093 * 107.29380 * 26.51702 * 7 6 5 9 9 H 1.09006 * 110.48784 * 239.16000 * 8 7 6 10 10 N 1.46494 * 110.49200 * 116.64519 * 8 7 6 11 11 C 1.34782 * 119.99946 * 88.24551 * 10 8 7 12 12 O 1.21280 * 119.99847 * 359.97438 * 11 10 8 13 13 C 1.50703 * 119.99716 * 180.02562 * 11 10 8 14 14 C 1.50707 * 109.46797 * 179.97438 * 13 11 10 15 15 C 1.38316 * 119.96493 * 270.01917 * 14 13 11 16 16 C 1.38278 * 120.14086 * 180.02562 * 15 14 13 17 17 C 1.38124 * 120.06832 * 359.74259 * 16 15 14 18 18 C 1.38863 * 119.92560 * 0.48489 * 17 16 15 19 19 O 1.35753 * 120.06153 * 179.79260 * 18 17 16 20 20 C 1.34825 * 117.00757 * 5.23928 * 19 18 17 21 21 H 1.07999 * 119.99572 * 354.92146 * 20 19 18 22 22 C 1.38653 * 120.00231 * 174.92420 * 20 19 18 23 23 N 1.31551 * 119.99966 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99707 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46714 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.47087 * 299.99411 * 24 22 20 27 27 H 1.48493 * 109.47276 * 59.99767 * 24 22 20 28 28 C 1.38082 * 119.96547 * 89.99711 * 14 13 11 29 29 H 1.08994 * 109.47174 * 300.00343 * 1 2 3 30 30 H 1.09000 * 109.47045 * 60.00965 * 1 2 3 31 31 H 1.09003 * 109.46692 * 180.02562 * 1 2 3 32 32 H 1.09004 * 110.52009 * 36.57793 * 5 3 2 33 33 H 1.08997 * 110.77987 * 273.69490 * 5 3 2 34 34 H 1.09000 * 109.87641 * 267.08793 * 7 6 5 35 35 H 1.09000 * 109.87354 * 145.94059 * 7 6 5 36 36 H 0.97007 * 120.00249 * 268.24306 * 10 8 7 37 37 H 1.08998 * 109.47706 * 59.99826 * 13 11 10 38 38 H 1.09001 * 109.46919 * 299.99191 * 13 11 10 39 39 H 1.08011 * 119.93149 * 359.97322 * 15 14 13 40 40 H 1.08003 * 119.96975 * 180.02562 * 16 15 14 41 41 H 1.07999 * 120.03716 * 180.25704 * 17 16 15 42 42 H 0.96999 * 120.00022 * 0.02562 * 23 22 20 43 43 H 1.07997 * 120.03251 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3339 2.0308 -0.4523 5 6 2.4062 1.7388 1.4370 6 8 3.4583 2.7038 1.2218 7 6 4.2732 2.2040 0.1483 8 6 3.3791 1.3008 -0.7231 9 1 3.7845 0.2898 -0.7658 10 7 3.2483 1.8567 -2.0721 11 6 4.1487 1.5374 -3.0228 12 8 5.0674 0.7900 -2.7613 13 6 4.0145 2.1098 -4.4104 14 6 5.1392 1.6007 -5.2748 15 6 6.3271 2.3054 -5.3486 16 6 7.3612 1.8419 -6.1410 17 6 7.2127 0.6703 -6.8572 18 6 6.0196 -0.0369 -6.7889 19 8 5.8691 -1.1865 -7.4950 20 6 6.9509 -1.6447 -8.1566 21 1 7.8588 -1.0602 -8.1772 22 6 6.8977 -2.8663 -8.8104 23 7 5.7919 -3.5784 -8.7848 24 14 8.3967 -3.5013 -9.7264 25 1 8.0834 -4.8194 -10.3346 26 1 8.7688 -2.5388 -10.7943 27 1 9.5296 -3.6510 -8.7781 28 6 4.9829 0.4311 -5.9918 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 2.7779 0.8857 2.0045 33 1 1.5612 2.1998 1.9484 34 1 5.1037 1.6249 0.5521 35 1 4.6526 3.0347 -0.4466 36 1 2.5137 2.4548 -2.2812 37 1 4.0589 3.1977 -4.3606 38 1 3.0598 1.8043 -4.8387 39 1 6.4469 3.2201 -4.7869 40 1 8.2878 2.3942 -6.1963 41 1 8.0222 0.3066 -7.4726 42 1 5.0136 -3.2488 -8.3089 43 1 4.0551 -0.1186 -5.9337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290456915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:34 Heat of formation + Delta-G solvation = -125.765894 kcal Electronic energy + Delta-G solvation = -26414.595303 eV Core-core repulsion = 22425.932818 eV Total energy + Delta-G solvation = -3988.662485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66322 -39.47404 -38.70911 -37.56165 -36.58745 -34.66958 -32.46336 -32.03553 -30.52707 -29.26374 -28.88312 -27.05829 -26.77422 -24.76445 -23.34954 -22.02672 -21.66033 -21.07783 -20.29711 -18.11521 -17.76655 -17.49622 -16.78377 -16.69955 -16.20270 -15.76272 -15.39724 -15.18817 -14.96185 -14.92088 -14.49666 -14.32829 -13.88491 -13.73384 -13.59984 -13.36768 -13.12382 -12.93067 -12.63140 -12.42804 -12.21862 -11.97676 -11.68895 -11.34520 -11.23338 -11.05513 -10.83808 -10.74302 -10.45899 -10.26110 -10.24253 -10.08835 -9.82257 -9.37198 -9.20692 -8.73108 -8.09764 -7.25318 -6.71972 -4.01062 2.04617 2.36201 2.64902 2.84180 3.10580 3.26798 3.32436 3.48548 3.76691 3.93477 4.15564 4.30345 4.38182 4.51940 4.69859 4.82655 4.85010 4.91353 4.93491 5.00445 5.15552 5.18228 5.22024 5.25134 5.26601 5.40509 5.47906 5.51743 5.61248 5.72310 5.89745 6.15702 6.19529 6.29336 6.30481 6.61877 6.66130 6.86808 7.13376 7.24654 7.29951 7.36742 7.60964 7.76427 8.19994 8.45461 8.97816 9.67009 10.72258 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018289 B = 0.002535 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.575210 B =11041.430323 C =11908.381853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.369 6.369 3 C 0.049 3.951 4 H 0.086 0.914 5 C 0.030 3.970 6 O -0.371 6.371 7 C 0.039 3.961 8 C 0.113 3.887 9 H 0.116 0.884 10 N -0.730 5.730 11 C 0.515 3.485 12 O -0.512 6.512 13 C -0.092 4.092 14 C -0.034 4.034 15 C -0.194 4.194 16 C -0.075 4.075 17 C -0.226 4.226 18 C 0.157 3.843 19 O -0.204 6.204 20 C -0.471 4.471 21 H 0.083 0.917 22 C 0.009 3.991 23 N -0.883 5.883 24 Si 1.096 2.904 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.281 1.281 28 C -0.176 4.176 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.399 0.601 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.127 0.873 42 H 0.281 0.719 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.284 13.719 17.088 24.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.287 6.287 3 C -0.010 4.010 4 H 0.103 0.897 5 C -0.048 4.048 6 O -0.289 6.289 7 C -0.039 4.039 8 C 0.007 3.993 9 H 0.134 0.866 10 N -0.385 5.385 11 C 0.302 3.698 12 O -0.385 6.385 13 C -0.132 4.132 14 C -0.034 4.034 15 C -0.213 4.213 16 C -0.093 4.093 17 C -0.246 4.246 18 C 0.105 3.895 19 O -0.109 6.109 20 C -0.547 4.547 21 H 0.101 0.899 22 C -0.196 4.196 23 N -0.515 5.515 24 Si 0.920 3.080 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.195 4.195 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.234 0.766 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.145 0.855 42 H 0.091 0.909 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.080 11.700 16.398 22.096 hybrid contribution -1.094 1.697 0.792 2.168 sum -10.174 13.397 17.190 24.052 Atomic orbital electron populations 1.22890 0.80264 1.03468 1.00153 1.87987 1.20298 1.25668 1.94756 1.23948 0.94772 0.86170 0.96133 0.89656 1.23971 0.91410 0.93445 0.95957 1.88928 1.41884 1.44176 1.53958 1.23639 0.93639 0.98454 0.88146 1.22257 0.94376 1.00158 0.82520 0.86602 1.46042 1.31114 1.51269 1.10080 1.20840 0.81586 0.80931 0.86435 1.90779 1.31773 1.34471 1.81490 1.20587 0.99895 1.01659 0.91081 1.18638 0.93988 0.94701 0.96117 1.20363 0.94289 1.01795 1.04895 1.20700 0.97547 0.95306 0.95728 1.21198 0.99217 0.97934 1.06220 1.19116 0.93036 0.87196 0.90195 1.83659 1.37701 1.33749 1.55781 1.22189 0.91875 1.06974 1.33674 0.89948 1.26520 1.04281 0.91365 0.97411 1.70566 1.03038 1.38983 1.38963 0.83111 0.72280 0.76799 0.75827 1.19809 1.20761 1.20756 1.19920 0.99295 0.98244 1.02091 0.93780 0.93609 0.89041 0.90668 0.88329 0.90794 0.88791 0.76618 0.88193 0.88209 0.87812 0.87336 0.85490 0.90859 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.85 101.05 1.10 1.27 16 2 O -0.37 -3.49 10.47 -35.23 -0.37 -3.86 16 3 C 0.05 0.40 3.35 -24.60 -0.08 0.31 16 4 H 0.09 0.52 7.44 -51.93 -0.39 0.14 16 5 C 0.03 0.23 7.46 38.33 0.29 0.51 16 6 O -0.37 -3.70 11.52 -35.23 -0.41 -4.11 16 7 C 0.04 0.39 7.50 37.73 0.28 0.68 16 8 C 0.11 1.17 3.14 -66.41 -0.21 0.96 16 9 H 0.12 1.53 7.55 -51.93 -0.39 1.14 16 10 N -0.73 -7.30 5.04 -52.33 -0.26 -7.56 16 11 C 0.52 7.23 7.82 -10.98 -0.09 7.15 16 12 O -0.51 -9.82 15.71 5.56 0.09 -9.73 16 13 C -0.09 -1.18 5.83 -29.03 -0.17 -1.35 16 14 C -0.03 -0.62 4.37 -104.65 -0.46 -1.07 16 15 C -0.19 -3.51 9.70 -39.54 -0.38 -3.89 16 16 C -0.07 -1.45 10.04 -39.61 -0.40 -1.85 16 17 C -0.23 -5.22 9.17 -39.39 -0.36 -5.58 16 18 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 19 O -0.20 -5.97 9.16 0.06 0.00 -5.97 16 20 C -0.47 -13.70 9.49 30.89 0.29 -13.40 16 21 H 0.08 2.25 5.20 -52.49 -0.27 1.98 16 22 C 0.01 0.26 5.49 -17.52 -0.10 0.17 16 23 N -0.88 -27.03 13.70 55.48 0.76 -26.27 16 24 Si 1.10 24.33 29.92 -169.99 -5.09 19.25 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 28 C -0.18 -3.86 9.65 -39.40 -0.38 -4.24 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.05 0.24 8.12 -51.93 -0.42 -0.18 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.94 7.93 -51.93 -0.41 0.53 16 36 H 0.40 2.64 8.37 -40.82 -0.34 2.30 16 37 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 39 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 40 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 41 H 0.13 2.94 5.64 -52.49 -0.30 2.65 16 42 H 0.28 8.81 7.97 -40.82 -0.33 8.49 16 43 H 0.11 2.36 8.06 -52.49 -0.42 1.93 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -36.26 366.61 -6.54 -42.80 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.87 Total: 6.55 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -0.92 Total: -16.62 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.50 Total: -33.84 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.69 Total: -23.67 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.09 Total: 19.25 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.26 -6.54 -42.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290456915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.968 kcal (2) G-P(sol) polarization free energy of solvation -36.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds