Wall clock time and date at job start Fri Apr 10 2020 14:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00117 * 2 1 4 4 H 1.09002 * 110.82434 * 333.64201 * 3 2 1 5 5 C 1.55220 * 111.02490 * 97.35226 * 3 2 1 6 6 O 1.44383 * 103.56421 * 155.07348 * 5 3 2 7 7 C 1.43743 * 106.97488 * 320.01146 * 6 5 3 8 8 C 1.54093 * 107.29380 * 26.51702 * 7 6 5 9 9 H 1.09006 * 110.48784 * 239.16000 * 8 7 6 10 10 N 1.46494 * 110.49200 * 116.64519 * 8 7 6 11 11 C 1.34782 * 119.99946 * 88.24551 * 10 8 7 12 12 O 1.21280 * 119.99847 * 359.97438 * 11 10 8 13 13 C 1.50703 * 119.99716 * 180.02562 * 11 10 8 14 14 C 1.50707 * 109.46797 * 179.97438 * 13 11 10 15 15 C 1.38316 * 119.96493 * 270.01917 * 14 13 11 16 16 C 1.38278 * 120.14086 * 180.02562 * 15 14 13 17 17 C 1.38124 * 120.06832 * 359.74259 * 16 15 14 18 18 C 1.38863 * 119.92560 * 0.48489 * 17 16 15 19 19 O 1.35753 * 120.06153 * 179.79260 * 18 17 16 20 20 C 1.34825 * 117.00757 * 5.23928 * 19 18 17 21 21 H 1.07999 * 119.99572 * 354.92146 * 20 19 18 22 22 C 1.38653 * 120.00231 * 174.92420 * 20 19 18 23 23 N 1.31551 * 119.99966 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99707 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46714 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.47087 * 299.99411 * 24 22 20 27 27 H 1.48493 * 109.47276 * 59.99767 * 24 22 20 28 28 C 1.38082 * 119.96547 * 89.99711 * 14 13 11 29 29 H 1.08994 * 109.47174 * 300.00343 * 1 2 3 30 30 H 1.09000 * 109.47045 * 60.00965 * 1 2 3 31 31 H 1.09003 * 109.46692 * 180.02562 * 1 2 3 32 32 H 1.09004 * 110.52009 * 36.57793 * 5 3 2 33 33 H 1.08997 * 110.77987 * 273.69490 * 5 3 2 34 34 H 1.09000 * 109.87641 * 267.08793 * 7 6 5 35 35 H 1.09000 * 109.87354 * 145.94059 * 7 6 5 36 36 H 0.97007 * 120.00249 * 268.24306 * 10 8 7 37 37 H 1.08998 * 109.47706 * 59.99826 * 13 11 10 38 38 H 1.09001 * 109.46919 * 299.99191 * 13 11 10 39 39 H 1.08011 * 119.93149 * 359.97322 * 15 14 13 40 40 H 1.08003 * 119.96975 * 180.02562 * 16 15 14 41 41 H 1.07999 * 120.03716 * 180.25704 * 17 16 15 42 42 H 0.96999 * 120.00022 * 0.02562 * 23 22 20 43 43 H 1.07997 * 120.03251 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3339 2.0308 -0.4523 5 6 2.4062 1.7388 1.4370 6 8 3.4583 2.7038 1.2218 7 6 4.2732 2.2040 0.1483 8 6 3.3791 1.3008 -0.7231 9 1 3.7845 0.2898 -0.7658 10 7 3.2483 1.8567 -2.0721 11 6 4.1487 1.5374 -3.0228 12 8 5.0674 0.7900 -2.7613 13 6 4.0145 2.1098 -4.4104 14 6 5.1392 1.6007 -5.2748 15 6 6.3271 2.3054 -5.3486 16 6 7.3612 1.8419 -6.1410 17 6 7.2127 0.6703 -6.8572 18 6 6.0196 -0.0369 -6.7889 19 8 5.8691 -1.1865 -7.4950 20 6 6.9509 -1.6447 -8.1566 21 1 7.8588 -1.0602 -8.1772 22 6 6.8977 -2.8663 -8.8104 23 7 5.7919 -3.5784 -8.7848 24 14 8.3967 -3.5013 -9.7264 25 1 8.0834 -4.8194 -10.3346 26 1 8.7688 -2.5388 -10.7943 27 1 9.5296 -3.6510 -8.7781 28 6 4.9829 0.4311 -5.9918 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 2.7779 0.8857 2.0045 33 1 1.5612 2.1998 1.9484 34 1 5.1037 1.6249 0.5521 35 1 4.6526 3.0347 -0.4466 36 1 2.5137 2.4548 -2.2812 37 1 4.0589 3.1977 -4.3606 38 1 3.0598 1.8043 -4.8387 39 1 6.4469 3.2201 -4.7869 40 1 8.2878 2.3942 -6.1963 41 1 8.0222 0.3066 -7.4726 42 1 5.0136 -3.2488 -8.3089 43 1 4.0551 -0.1186 -5.9337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290456915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:33 Heat of formation + Delta-G solvation = -153.930519 kcal Electronic energy + Delta-G solvation = -26415.816613 eV Core-core repulsion = 22425.932818 eV Total energy + Delta-G solvation = -3989.883794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.57508 -40.90776 -40.06283 -38.34109 -38.20241 -35.66873 -34.39615 -33.58094 -31.42373 -30.82972 -29.80672 -28.27841 -27.39292 -26.82033 -24.18710 -23.37575 -23.02301 -22.32128 -21.51261 -19.91263 -18.80628 -18.53347 -18.20556 -17.60751 -17.10369 -16.95998 -16.70852 -16.43484 -16.05799 -15.80092 -15.67735 -15.62971 -15.51236 -15.14991 -14.90899 -14.78701 -14.51925 -14.12395 -13.65645 -13.18836 -13.10494 -12.98108 -12.85904 -12.73618 -12.54091 -12.46070 -12.41083 -12.04548 -11.99052 -11.94140 -11.32452 -11.19820 -10.97856 -10.79675 -10.76345 -10.09454 -9.71711 -9.07996 -8.95510 -6.25855 0.43710 0.67960 1.46656 1.56994 1.59838 1.77514 1.95683 2.34839 2.42752 2.82813 3.06798 3.14033 3.24111 3.28888 3.62514 3.71808 3.76798 3.98648 4.02900 4.07969 4.12313 4.25334 4.38373 4.39488 4.50791 4.51902 4.59589 4.61120 4.63922 4.66530 4.68455 4.71072 4.84850 4.98120 5.20754 5.21777 5.31641 5.58535 5.60320 5.67845 5.70021 6.04942 6.09815 6.28406 6.45748 6.85834 7.20452 7.62194 8.49126 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018289 B = 0.002535 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.575210 B =11041.430323 C =11908.381853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.398 6.398 3 C 0.057 3.943 4 H 0.114 0.886 5 C 0.029 3.971 6 O -0.379 6.379 7 C 0.045 3.955 8 C 0.108 3.892 9 H 0.081 0.919 10 N -0.707 5.707 11 C 0.517 3.483 12 O -0.574 6.574 13 C -0.089 4.089 14 C -0.026 4.026 15 C -0.175 4.175 16 C -0.074 4.074 17 C -0.245 4.245 18 C 0.113 3.887 19 O -0.255 6.255 20 C -0.488 4.488 21 H 0.090 0.910 22 C -0.046 4.046 23 N -0.918 5.918 24 Si 1.146 2.854 25 H -0.272 1.272 26 H -0.257 1.257 27 H -0.263 1.263 28 C -0.192 4.192 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.421 0.579 37 H 0.150 0.850 38 H 0.124 0.876 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.116 0.884 42 H 0.259 0.741 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.805 17.416 18.640 27.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.317 6.317 3 C -0.002 4.002 4 H 0.131 0.869 5 C -0.048 4.048 6 O -0.298 6.298 7 C -0.033 4.033 8 C 0.002 3.998 9 H 0.099 0.901 10 N -0.362 5.362 11 C 0.304 3.696 12 O -0.452 6.452 13 C -0.128 4.128 14 C -0.027 4.027 15 C -0.194 4.194 16 C -0.092 4.092 17 C -0.264 4.264 18 C 0.063 3.937 19 O -0.163 6.163 20 C -0.564 4.564 21 H 0.107 0.893 22 C -0.242 4.242 23 N -0.553 5.553 24 Si 0.961 3.039 25 H -0.196 1.196 26 H -0.181 1.181 27 H -0.188 1.188 28 C -0.211 4.211 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.259 0.741 37 H 0.167 0.833 38 H 0.142 0.858 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.133 0.867 42 H 0.067 0.933 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.662 15.495 18.000 25.641 hybrid contribution -1.041 0.850 0.589 1.467 sum -10.703 16.344 18.590 26.968 Atomic orbital electron populations 1.23086 0.78565 1.04117 1.01652 1.87962 1.22266 1.26580 1.94909 1.23953 0.93817 0.86409 0.96059 0.86875 1.24128 0.91616 0.93195 0.95881 1.88920 1.42416 1.44734 1.53765 1.23504 0.93380 0.98225 0.88239 1.22219 0.96230 0.98494 0.82846 0.90114 1.45783 1.30594 1.50506 1.09280 1.21020 0.81206 0.80055 0.87276 1.90778 1.34551 1.37345 1.82530 1.20713 0.98681 1.04318 0.89094 1.19218 0.95989 0.92701 0.94799 1.21029 0.93019 1.02521 1.02805 1.21164 0.99656 0.93901 0.94483 1.21326 0.98223 0.99550 1.07341 1.19766 0.95290 0.86979 0.91619 1.83633 1.38290 1.36165 1.58225 1.22588 0.92428 1.07537 1.33856 0.89279 1.28434 1.06384 0.91523 0.97821 1.70706 1.03469 1.39871 1.41261 0.82593 0.69066 0.76694 0.75565 1.19639 1.18131 1.18769 1.20236 0.98553 0.99868 1.02486 0.91722 0.92586 0.89011 0.91334 0.85490 0.91918 0.88367 0.74099 0.83254 0.85816 0.83068 0.83563 0.86662 0.93299 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.85 113.37 1.23 1.44 16 2 O -0.40 -6.96 10.47 -148.98 -1.56 -8.52 16 3 C 0.06 0.78 3.35 31.97 0.11 0.89 16 4 H 0.11 0.91 7.44 -2.39 -0.02 0.89 16 5 C 0.03 0.37 7.46 72.74 0.54 0.92 16 6 O -0.38 -6.73 11.52 -148.98 -1.72 -8.45 16 7 C 0.04 0.84 7.50 72.35 0.54 1.38 16 8 C 0.11 2.11 3.14 45.98 0.14 2.26 16 9 H 0.08 2.20 7.55 -2.38 -0.02 2.18 16 10 N -0.71 -12.11 5.04 -437.86 -2.21 -14.32 16 11 C 0.52 13.25 7.82 87.66 0.69 13.93 16 12 O -0.57 -21.77 15.71 -3.03 -0.05 -21.81 16 13 C -0.09 -1.91 5.83 29.10 0.17 -1.74 16 14 C -0.03 -0.90 4.37 -19.88 -0.09 -0.99 16 15 C -0.18 -5.63 9.70 22.30 0.22 -5.42 16 16 C -0.07 -2.70 10.04 22.25 0.22 -2.48 16 17 C -0.25 -11.49 9.17 22.39 0.21 -11.29 16 18 C 0.11 5.97 6.65 22.58 0.15 6.12 16 19 O -0.26 -16.00 9.16 -22.72 -0.21 -16.21 16 20 C -0.49 -30.02 9.49 67.92 0.64 -29.38 16 21 H 0.09 5.12 5.20 -2.91 -0.02 5.11 16 22 C -0.05 -2.75 5.49 84.83 0.47 -2.29 16 23 N -0.92 -59.60 13.70 21.61 0.30 -59.30 16 24 Si 1.15 50.07 29.92 68.60 2.05 52.13 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 27 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 28 C -0.19 -8.59 9.65 22.39 0.22 -8.37 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.44 8.12 -2.39 -0.02 0.42 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.10 1.74 7.93 -2.39 -0.02 1.72 16 36 H 0.42 3.69 8.37 -92.70 -0.78 2.91 16 37 H 0.15 1.82 8.08 -2.39 -0.02 1.80 16 38 H 0.12 2.16 8.08 -2.39 -0.02 2.14 16 39 H 0.15 3.53 8.06 -2.90 -0.02 3.51 16 40 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 41 H 0.12 5.54 5.64 -2.91 -0.02 5.52 16 42 H 0.26 17.53 7.97 -92.71 -0.74 16.79 16 43 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -87.84 366.61 2.36 -85.48 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.29 Total: 26.03 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 5.46 Total: -35.02 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -1.91 Total: -73.62 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -3.53 Total: -54.99 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 2.05 Total: 52.13 kcal Total: -87.84 2.36 -85.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290456915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.455 kcal (2) G-P(sol) polarization free energy of solvation -87.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds