Wall clock time and date at job start Fri Apr 10 2020 14:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.38594 * 120.00196 * 298.55162 * 3 2 1 5 5 C 1.40713 * 119.99728 * 359.97438 * 4 3 2 6 6 C 1.38484 * 126.13919 * 179.71937 * 5 4 3 7 7 C 1.40024 * 106.49010 * 179.85036 * 6 5 4 8 8 C 1.35378 * 107.26243 * 0.41083 * 7 6 5 9 9 O 1.33923 * 109.10625 * 359.73822 * 8 7 6 10 10 C 1.46814 * 119.99630 * 118.55083 * 3 2 1 11 11 O 1.21705 * 119.99881 * 176.47299 * 10 3 2 12 12 N 1.34777 * 120.00399 * 356.47755 * 10 3 2 13 13 C 1.46502 * 119.99881 * 6.23711 * 12 10 3 14 14 C 1.50701 * 109.47026 * 277.53504 * 13 12 10 15 15 H 1.08008 * 119.99935 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00233 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99934 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00241 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47179 * 59.99367 * 18 16 14 20 20 H 1.48500 * 109.47286 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46937 * 299.99771 * 18 16 14 22 22 C 1.39834 * 120.00159 * 186.23657 * 12 10 3 23 23 C 1.38901 * 120.07064 * 353.30484 * 22 12 10 24 24 C 1.38107 * 119.92340 * 179.97438 * 23 22 12 25 25 C 1.38285 * 120.07306 * 359.97438 * 24 23 22 26 26 C 1.38286 * 120.14920 * 0.04204 * 25 24 23 27 27 C 1.38105 * 120.06929 * 359.95736 * 26 25 24 28 28 H 1.08002 * 120.00260 * 180.02562 * 4 3 2 29 29 H 1.07997 * 126.75732 * 359.96095 * 6 5 4 30 30 H 1.08008 * 126.37100 * 180.18736 * 7 6 5 31 31 H 1.07998 * 125.44026 * 179.74412 * 8 7 6 32 32 H 1.09000 * 109.47323 * 37.53132 * 13 12 10 33 33 H 1.08997 * 109.47090 * 157.53717 * 13 12 10 34 34 H 0.97004 * 120.00143 * 180.02562 * 17 16 14 35 35 H 1.08000 * 120.03824 * 359.70150 * 23 22 12 36 36 H 1.07997 * 119.96108 * 179.97438 * 24 23 22 37 37 H 1.08006 * 119.92433 * 180.02562 * 25 24 23 38 38 H 1.07999 * 119.96558 * 179.97438 * 26 25 24 39 39 H 1.08001 * 120.03644 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2613 -0.5727 1.0543 5 6 2.5580 -1.1550 2.1249 6 6 3.1184 -1.7648 3.2348 7 6 2.0515 -2.1929 4.0342 8 6 0.9082 -1.8472 3.3971 9 8 1.2155 -1.2246 2.2519 10 6 3.3018 0.6087 -1.1169 11 8 4.5171 0.6667 -1.0868 12 7 2.6296 1.1027 -2.1754 13 6 1.1658 1.1579 -2.1528 14 6 0.6064 -0.1870 -2.5395 15 1 1.2745 -1.0012 -2.7787 16 6 -0.7582 -0.3777 -2.5890 17 7 -1.5717 0.6139 -2.2983 18 14 -1.4516 -2.0445 -3.0691 19 1 -0.9803 -3.0725 -2.1067 20 1 -2.9354 -1.9886 -3.0461 21 1 -0.9902 -2.3975 -4.4359 22 6 3.3293 1.5626 -3.2954 23 6 4.7158 1.6412 -3.2658 24 6 5.4038 2.0954 -4.3738 25 6 4.7140 2.4712 -5.5119 26 6 3.3337 2.3945 -5.5445 27 6 2.6396 1.9412 -4.4399 28 1 4.3413 -0.5719 1.0545 29 1 4.1712 -1.8848 3.4437 30 1 2.1267 -2.7069 4.9812 31 1 -0.0919 -2.0423 3.7552 32 1 0.8274 1.4172 -1.1496 33 1 0.8196 1.9121 -2.8594 34 1 -2.5318 0.4797 -2.3328 35 1 5.2549 1.3516 -2.3759 36 1 6.4818 2.1571 -4.3514 37 1 5.2546 2.8257 -6.3772 38 1 2.7979 2.6892 -6.4347 39 1 1.5615 1.8819 -4.4658 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002361026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:11 Heat of formation + Delta-G solvation = 88.921206 kcal Electronic energy + Delta-G solvation = -26490.383368 eV Core-core repulsion = 22752.913423 eV Total energy + Delta-G solvation = -3737.469945 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.53510 -41.90286 -39.35531 -38.09316 -36.53946 -34.94426 -34.51902 -33.93538 -31.75177 -31.32756 -29.90250 -28.96054 -25.87833 -25.30047 -23.63723 -23.20533 -22.60857 -21.65040 -21.29119 -19.39197 -18.79528 -18.26351 -17.82680 -17.16152 -17.10175 -16.64898 -16.46494 -16.22747 -15.87361 -15.07190 -15.01986 -14.78615 -14.49083 -14.30105 -14.20823 -14.13068 -13.81407 -13.62566 -13.60410 -13.42917 -13.20530 -13.05530 -12.79753 -12.72330 -12.27293 -12.09876 -11.85378 -11.63825 -11.50436 -10.91754 -10.80333 -10.56580 -10.26876 -9.74066 -9.05007 -8.67175 -8.22663 -6.35038 -0.91028 0.48717 0.61337 1.15327 1.26722 1.28841 1.34843 1.70590 1.87727 1.99993 2.04359 2.26375 2.42723 2.92148 3.07658 3.13878 3.34137 3.47227 3.95557 4.00225 4.09798 4.19341 4.25190 4.42809 4.55139 4.56665 4.62327 4.68363 4.80731 4.91192 4.92412 4.99602 5.02870 5.09433 5.29655 5.45434 5.55910 5.60418 5.65362 5.72892 5.81396 5.91104 6.11934 6.34597 6.36469 6.68233 7.00975 7.20261 7.33314 8.80976 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.010678 B = 0.005467 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.700483 B = 5119.983966 C = 7276.490447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C 0.240 3.760 3 C -0.141 4.141 4 C 0.102 3.898 5 C -0.078 4.078 6 C -0.107 4.107 7 C -0.224 4.224 8 C -0.011 4.011 9 O -0.188 6.188 10 C 0.571 3.429 11 O -0.538 6.538 12 N -0.538 5.538 13 C 0.231 3.769 14 C -0.551 4.551 15 H 0.043 0.957 16 C 0.053 3.947 17 N -0.888 5.888 18 Si 0.937 3.063 19 H -0.280 1.280 20 H -0.278 1.278 21 H -0.270 1.270 22 C 0.136 3.864 23 C -0.190 4.190 24 C -0.101 4.101 25 C -0.149 4.149 26 C -0.103 4.103 27 C -0.172 4.172 28 H 0.213 0.787 29 H 0.199 0.801 30 H 0.189 0.811 31 H 0.226 0.774 32 H 0.043 0.957 33 H 0.025 0.975 34 H 0.264 0.736 35 H 0.177 0.823 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.141 0.859 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.717 -2.737 8.704 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.072 5.072 2 C -0.073 4.073 3 C -0.148 4.148 4 C 0.079 3.921 5 C -0.126 4.126 6 C -0.126 4.126 7 C -0.242 4.242 8 C -0.081 4.081 9 O -0.084 6.084 10 C 0.364 3.636 11 O -0.421 6.421 12 N -0.256 5.256 13 C 0.110 3.890 14 C -0.589 4.589 15 H 0.061 0.939 16 C -0.151 4.151 17 N -0.524 5.524 18 Si 0.763 3.237 19 H -0.206 1.206 20 H -0.203 1.203 21 H -0.195 1.195 22 C 0.041 3.959 23 C -0.210 4.210 24 C -0.119 4.119 25 C -0.168 4.168 26 C -0.121 4.121 27 C -0.193 4.193 28 H 0.230 0.770 29 H 0.216 0.784 30 H 0.207 0.793 31 H 0.242 0.758 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.194 0.806 36 H 0.170 0.830 37 H 0.170 0.830 38 H 0.159 0.841 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.098 -2.517 8.534 14.224 hybrid contribution -1.061 -0.787 -0.556 1.433 sum 10.037 -3.303 7.978 13.240 Atomic orbital electron populations 1.81205 1.12638 1.06763 1.06613 1.24903 0.92731 0.94891 0.94749 1.18245 0.85336 1.11925 0.99267 1.21574 1.01024 0.84534 0.84963 1.20095 0.80720 1.11038 1.00719 1.23009 1.02693 0.95852 0.91083 1.22238 0.90837 1.07184 1.03940 1.25302 1.02874 0.95775 0.84176 1.84354 1.24804 1.60753 1.38454 1.17844 0.86321 0.77535 0.81871 1.90341 1.12652 1.59551 1.79583 1.45787 1.09310 1.56124 1.14378 1.19875 0.73031 0.97513 0.98570 1.21144 0.91742 0.96367 1.49675 0.93900 1.25237 0.96768 0.99083 0.93974 1.69952 1.03473 1.32562 1.46439 0.85938 0.77664 0.81355 0.78762 1.20575 1.20335 1.19485 1.18431 0.92511 0.97685 0.87249 1.22834 0.92046 1.02779 1.03305 1.21466 1.01025 0.97189 0.92263 1.21446 0.93691 1.02206 0.99427 1.21183 0.95227 0.98512 0.97211 1.21082 0.99999 1.04484 0.93720 0.77023 0.78360 0.79332 0.75797 0.93947 0.95715 0.92707 0.80641 0.82998 0.82954 0.84073 0.87507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -20.66 14.21 19.01 0.27 -20.39 16 2 C 0.24 11.26 7.48 88.33 0.66 11.92 16 3 C -0.14 -5.52 5.89 -19.70 -0.12 -5.64 16 4 C 0.10 2.86 9.53 22.96 0.22 3.07 16 5 C -0.08 -2.07 6.71 22.93 0.15 -1.92 16 6 C -0.11 -1.87 10.91 22.76 0.25 -1.62 16 7 C -0.22 -3.65 10.86 22.04 0.24 -3.41 16 8 C -0.01 -0.24 12.06 67.16 0.81 0.57 16 9 O -0.19 -6.01 8.12 -6.14 -0.05 -6.06 16 10 C 0.57 24.00 7.50 86.49 0.65 24.64 16 11 O -0.54 -20.99 12.70 -4.36 -0.06 -21.04 16 12 N -0.54 -25.10 2.70 -639.57 -1.73 -26.83 16 13 C 0.23 12.18 4.21 85.63 0.36 12.55 16 14 C -0.55 -30.95 6.69 25.60 0.17 -30.78 16 15 H 0.04 2.50 7.81 -2.91 -0.02 2.47 16 16 C 0.05 3.03 4.07 84.65 0.34 3.37 16 17 N -0.89 -52.26 12.70 21.45 0.27 -51.99 16 18 Si 0.94 45.94 29.54 68.60 2.03 47.97 16 19 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 20 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 21 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 22 C 0.14 5.88 6.49 38.18 0.25 6.13 16 23 C -0.19 -7.08 9.05 22.40 0.20 -6.88 16 24 C -0.10 -2.98 10.04 22.25 0.22 -2.75 16 25 C -0.15 -4.12 10.04 22.29 0.22 -3.90 16 26 C -0.10 -3.35 10.04 22.25 0.22 -3.13 16 27 C -0.17 -7.15 9.17 22.40 0.21 -6.95 16 28 H 0.21 4.14 7.60 -2.91 -0.02 4.12 16 29 H 0.20 1.81 8.06 -2.91 -0.02 1.79 16 30 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.23 3.48 8.06 -2.91 -0.02 3.46 16 32 H 0.04 2.39 4.53 -2.39 -0.01 2.38 16 33 H 0.02 1.40 6.09 -2.39 -0.01 1.39 16 34 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.18 6.64 4.52 -63.05 -0.28 6.35 16 36 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 37 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 39 H 0.11 4.97 6.18 -2.91 -0.02 4.95 16 Total: -1.00 -74.61 335.43 6.64 -67.97 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.84 Total: 15.10 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 5.07 Total: -4.72 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -1.19 Total: -99.21 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.11 Total: -27.10 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -74.61 6.64 -67.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002361026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.893 kcal (2) G-P(sol) polarization free energy of solvation -74.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds