Wall clock time and date at job start Fri Apr 10 2020 14:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39752 * 120.09766 * 24.81199 * 3 2 1 5 5 C 1.37734 * 119.90222 * 180.02562 * 4 3 2 6 6 C 1.38961 * 120.09504 * 0.02562 * 5 4 3 7 7 O 1.35759 * 119.90237 * 180.02562 * 6 5 4 8 8 C 1.42902 * 116.99693 * 184.98530 * 7 6 5 9 9 C 1.50700 * 109.47000 * 184.56767 * 8 7 6 10 10 O 1.21280 * 120.00301 * 4.96556 * 9 8 7 11 11 N 1.34778 * 120.00110 * 184.96443 * 9 8 7 12 12 C 1.37135 * 120.00099 * 4.31229 * 11 9 8 13 13 H 1.08004 * 119.99959 * 59.07270 * 12 11 9 14 14 C 1.38888 * 120.00340 * 239.07513 * 12 11 9 15 15 N 1.31427 * 119.99762 * 357.02305 * 14 12 11 16 16 Si 1.86800 * 120.00279 * 177.01985 * 14 12 11 17 17 H 1.48502 * 109.46709 * 60.00408 * 16 14 12 18 18 H 1.48498 * 109.46986 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47130 * 300.00343 * 16 14 12 20 20 C 1.39789 * 120.00073 * 184.30759 * 11 9 8 21 21 C 1.38963 * 120.07703 * 174.20979 * 20 11 9 22 22 C 1.38089 * 119.91966 * 179.97438 * 21 20 11 23 23 C 1.38309 * 120.07917 * 359.97438 * 22 21 20 24 24 C 1.38306 * 120.15348 * 0.04472 * 23 22 21 25 25 C 1.38083 * 120.08098 * 359.95491 * 24 23 22 26 26 C 1.38966 * 120.19432 * 0.26472 * 6 5 4 27 27 C 1.37729 * 120.08801 * 359.45880 * 26 6 5 28 28 H 1.07993 * 120.05086 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.95081 * 179.97438 * 5 4 3 30 30 H 1.08993 * 109.47360 * 64.56988 * 8 7 6 31 31 H 1.09000 * 109.47190 * 304.56293 * 8 7 6 32 32 H 0.97001 * 119.99830 * 184.99192 * 15 14 12 33 33 H 1.07998 * 120.03726 * 359.70880 * 21 20 11 34 34 H 1.08003 * 119.95842 * 180.02562 * 22 21 20 35 35 H 1.07996 * 119.91621 * 180.02562 * 23 22 21 36 36 H 1.08001 * 119.95865 * 179.97438 * 24 23 22 37 37 H 1.08005 * 120.03562 * 179.97438 * 25 24 23 38 38 H 1.07997 * 119.95660 * 179.70435 * 26 6 5 39 39 H 1.08002 * 120.04602 * 180.24488 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2693 -1.0965 -0.5074 5 6 4.6466 -1.0919 -0.5049 6 6 5.3388 0.0014 0.0016 7 8 6.6964 0.0021 0.0016 8 6 7.3445 1.1068 0.6353 9 6 8.8346 0.9944 0.4400 10 8 9.2901 0.1116 -0.2557 11 7 9.6610 1.8750 1.0384 12 6 9.1540 2.8182 1.8950 13 1 8.6065 2.5109 2.7738 14 6 9.3444 4.1687 1.6325 15 7 10.0602 4.5420 0.5954 16 14 8.5833 5.4546 2.7535 17 1 9.1053 5.2802 4.1328 18 1 8.9322 6.8108 2.2595 19 1 7.1069 5.2949 2.7590 20 6 11.0351 1.8267 0.7860 21 6 11.8734 2.8058 1.3054 22 6 13.2303 2.7547 1.0544 23 6 13.7554 1.7304 0.2875 24 6 12.9239 0.7545 -0.2313 25 6 11.5660 0.7993 0.0156 26 6 4.6455 1.0920 0.5126 27 6 3.2682 1.0980 0.5088 28 1 2.7321 -1.9471 -0.9001 29 1 5.1894 -1.9395 -0.8965 30 1 7.1163 1.0994 1.7011 31 1 6.9895 2.0382 0.1942 32 1 10.2539 5.4816 0.4527 33 1 11.4636 3.6080 1.9010 34 1 13.8825 3.5150 1.4581 35 1 14.8170 1.6927 0.0933 36 1 13.3371 -0.0437 -0.8301 37 1 10.9173 0.0371 -0.3903 38 1 5.1873 1.9376 0.9096 39 1 2.7300 1.9476 0.9025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023418193.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:19 Heat of formation + Delta-G solvation = 39.050875 kcal Electronic energy + Delta-G solvation = -25461.568596 eV Core-core repulsion = 21721.936112 eV Total energy + Delta-G solvation = -3739.632484 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.110 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.42639 -39.66963 -38.01209 -37.05808 -36.11232 -35.17511 -32.15271 -31.44955 -30.69758 -29.69954 -29.48207 -27.34892 -25.31914 -23.44159 -23.07394 -21.76313 -21.20693 -19.68524 -19.01307 -18.16020 -17.88200 -16.34189 -16.09278 -15.88973 -15.54508 -15.24095 -14.82075 -14.50110 -14.21339 -14.09580 -13.82109 -13.76204 -13.64062 -13.17547 -13.07138 -12.78466 -12.49822 -12.37654 -12.31529 -12.12168 -11.91608 -11.63222 -11.46037 -11.17284 -11.04431 -10.88126 -10.77018 -10.61545 -10.10123 -9.32454 -9.28170 -8.89157 -8.31444 -8.28430 -7.84327 -7.04788 -6.40706 -4.79533 0.73528 1.15012 2.32202 2.52624 2.56536 2.84417 2.92110 2.94423 3.02287 3.03946 3.52394 3.75005 3.81396 3.83725 4.44148 4.57937 4.61089 4.73654 4.99106 5.03746 5.23126 5.39177 5.46681 5.56048 5.65846 5.77589 5.83772 5.90732 5.99257 6.11984 6.14003 6.18102 6.45657 6.65676 6.69093 6.82271 7.06349 7.09128 7.32871 7.40056 7.45607 7.54898 7.63465 7.69325 7.91687 8.32346 8.65311 9.03251 9.40776 10.29474 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.015299 B = 0.003371 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.762314 B = 8305.357413 C = 9988.169451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.266 3.734 3 C -0.087 4.087 4 C -0.029 4.029 5 C -0.157 4.157 6 C 0.175 3.825 7 O -0.288 6.288 8 C 0.059 3.941 9 C 0.498 3.502 10 O -0.545 6.545 11 N -0.378 5.378 12 C -0.382 4.382 13 H 0.096 0.904 14 C 0.056 3.944 15 N -0.838 5.838 16 Si 0.918 3.082 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.267 1.267 20 C 0.178 3.822 21 C -0.090 4.090 22 C -0.128 4.128 23 C -0.168 4.168 24 C -0.124 4.124 25 C -0.190 4.190 26 C -0.215 4.215 27 C -0.024 4.024 28 H 0.137 0.863 29 H 0.143 0.857 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.278 0.722 33 H 0.137 0.863 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.174 0.826 38 H 0.145 0.855 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.228 -3.557 1.174 6.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.049 4.049 3 C -0.091 4.091 4 C -0.050 4.050 5 C -0.176 4.176 6 C 0.127 3.873 7 O -0.198 6.198 8 C -0.019 4.019 9 C 0.288 3.712 10 O -0.428 6.428 11 N -0.088 5.088 12 C -0.509 4.509 13 H 0.113 0.887 14 C -0.154 4.154 15 N -0.469 5.469 16 Si 0.743 3.257 17 H -0.192 1.192 18 H -0.204 1.204 19 H -0.191 1.191 20 C 0.082 3.918 21 C -0.110 4.110 22 C -0.147 4.147 23 C -0.188 4.188 24 C -0.143 4.143 25 C -0.210 4.210 26 C -0.234 4.234 27 C -0.045 4.045 28 H 0.155 0.845 29 H 0.161 0.839 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.155 0.845 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.190 0.810 38 H 0.163 0.837 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.675 -3.925 0.612 7.767 hybrid contribution 0.281 1.358 0.614 1.516 sum -6.394 -2.567 1.226 6.998 Atomic orbital electron populations 1.81237 1.12174 1.08026 1.09815 1.25698 0.92593 0.93444 0.93128 1.15885 0.84235 0.98342 1.10670 1.20902 0.93012 0.96313 0.94766 1.20378 0.93043 0.98628 1.05508 1.19437 0.83110 0.93299 0.91494 1.86127 1.15203 1.45578 1.72913 1.22475 0.92121 0.88635 0.98653 1.20182 0.87434 0.83299 0.80300 1.90252 1.75705 1.36213 1.40608 1.40764 1.02444 1.27902 1.37694 1.19357 1.39846 0.85474 1.06250 0.88685 1.25721 0.95122 0.98848 0.95737 1.70023 1.32776 1.18487 1.25605 0.86124 0.80022 0.79397 0.80144 1.19245 1.20443 1.19130 1.18275 0.83630 0.94061 0.95826 1.21088 0.91559 0.97524 1.00878 1.20788 0.95038 0.98374 1.00540 1.20821 0.98383 0.97233 1.02322 1.20854 0.93864 0.98701 1.00858 1.22767 0.96031 1.01023 1.01142 1.21379 0.94763 1.00004 1.07246 1.20937 0.93394 0.96115 0.94050 0.84536 0.83946 0.88762 0.88407 0.91120 0.84539 0.87754 0.88169 0.87688 0.81000 0.83705 0.84833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.92 18.54 41.84 0.78 -5.14 16 2 C 0.27 3.03 15.33 -22.47 -0.34 2.69 16 3 C -0.09 -0.88 5.74 -106.84 -0.61 -1.49 16 4 C -0.03 -0.27 9.75 -39.20 -0.38 -0.65 16 5 C -0.16 -1.69 9.97 -39.50 -0.39 -2.09 16 6 C 0.18 2.27 6.69 -39.04 -0.26 2.01 16 7 O -0.29 -4.71 9.66 -38.85 -0.38 -5.08 16 8 C 0.06 1.00 4.18 36.01 0.15 1.15 16 9 C 0.50 10.86 7.65 -10.98 -0.08 10.77 16 10 O -0.55 -12.92 12.89 -14.30 -0.18 -13.10 16 11 N -0.38 -8.74 2.64 -58.98 -0.16 -8.90 16 12 C -0.38 -8.40 7.48 -14.94 -0.11 -8.51 16 13 H 0.10 1.93 7.66 -52.48 -0.40 1.53 16 14 C 0.06 1.23 4.03 -17.48 -0.07 1.16 16 15 N -0.84 -19.93 10.71 55.49 0.59 -19.34 16 16 Si 0.92 16.76 29.56 -169.99 -5.02 11.73 16 17 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 18 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 19 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 20 C 0.18 4.24 6.04 -83.69 -0.51 3.73 16 21 C -0.09 -2.05 7.72 -39.37 -0.30 -2.35 16 22 C -0.13 -2.59 10.04 -39.61 -0.40 -2.99 16 23 C -0.17 -3.22 10.04 -39.53 -0.40 -3.62 16 24 C -0.12 -2.49 10.04 -39.61 -0.40 -2.89 16 25 C -0.19 -4.34 9.05 -39.37 -0.36 -4.70 16 26 C -0.22 -2.43 9.05 -39.50 -0.36 -2.79 16 27 C -0.02 -0.24 9.75 -39.20 -0.38 -0.62 16 28 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 30 H 0.09 1.41 7.70 -51.93 -0.40 1.01 16 31 H 0.10 1.58 7.15 -51.93 -0.37 1.21 16 32 H 0.28 6.30 8.32 -40.82 -0.34 5.96 16 33 H 0.14 3.21 5.11 -52.49 -0.27 2.94 16 34 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 35 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.17 4.08 4.52 -56.31 -0.25 3.82 16 38 H 0.15 1.55 6.25 -52.49 -0.33 1.22 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 342.92 15.07 5.17 5.17 Total: -1.00 -27.53 342.92 -8.11 -35.64 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -3.70 Total: 10.21 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -5.21 Total: -11.19 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 1.21 Total: -33.38 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.56 Total: -18.19 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -5.02 Total: 11.73 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.53 -8.11 -35.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023418193.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.688 kcal (2) G-P(sol) polarization free energy of solvation -27.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds