Wall clock time and date at job start Fri Apr 10 2020 14:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 N 1.46509 * 109.47132 * 179.97438 * 15 13 12 17 17 C 1.34778 * 119.99788 * 179.97438 * 16 15 13 18 18 O 1.21548 * 119.99842 * 359.97438 * 17 16 15 19 19 C 1.47847 * 119.99816 * 180.02562 * 17 16 15 20 20 C 1.39600 * 120.13400 * 359.72522 * 19 17 16 21 21 C 1.37946 * 119.90661 * 179.76722 * 20 19 17 22 22 C 1.38341 * 120.16832 * 0.50793 * 21 20 19 23 23 C 1.38550 * 120.27693 * 359.74346 * 22 21 20 24 24 F 1.35092 * 119.95984 * 180.02562 * 23 22 21 25 25 C 1.38221 * 120.08473 * 0.02562 * 23 22 21 26 26 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 29 29 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 30 30 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 31 31 H 1.08994 * 109.47139 * 299.99683 * 15 13 12 32 32 H 1.09001 * 109.47137 * 59.99892 * 15 13 12 33 33 H 0.97001 * 119.99993 * 359.97438 * 16 15 13 34 34 H 1.07998 * 120.04471 * 0.02562 * 20 19 17 35 35 H 1.07996 * 119.91574 * 180.22714 * 21 20 19 36 36 H 1.08006 * 119.86348 * 179.72110 * 22 21 20 37 37 H 1.07997 * 120.08583 * 180.02562 * 25 23 22 38 38 H 1.09001 * 113.77016 * 221.05654 * 26 12 11 39 39 H 1.09005 * 113.86980 * 89.67729 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 7 -0.3388 -7.2047 2.6552 17 6 -1.2206 -7.6345 3.5794 18 8 -1.8587 -6.8307 4.2307 19 6 -1.4108 -9.0837 3.8019 20 6 -0.6827 -10.0094 3.0522 21 6 -0.8604 -11.3604 3.2670 22 6 -1.7657 -11.8003 4.2160 23 6 -2.4959 -10.8881 4.9606 24 9 -3.3779 -11.3248 5.8860 25 6 -2.3232 -9.5318 4.7577 26 6 2.1615 -3.7405 -0.0011 27 1 -0.4850 0.8401 0.0004 28 1 -0.3764 -1.7802 -0.9678 29 1 1.3966 -2.5373 2.2104 30 1 -0.2731 -2.8605 1.5670 31 1 0.1879 -5.3004 3.3596 32 1 -1.0946 -5.3215 2.1255 33 1 0.1707 -7.8461 2.1357 34 1 0.0216 -9.6681 2.3081 35 1 -0.2945 -12.0765 2.6897 36 1 -1.9042 -12.8593 4.3770 37 1 -2.8921 -8.8208 5.3383 38 1 2.1758 -4.2745 -0.9513 39 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188677705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:19 Heat of formation + Delta-G solvation = -98.685403 kcal Electronic energy + Delta-G solvation = -25788.793351 eV Core-core repulsion = 21612.418948 eV Total energy + Delta-G solvation = -4176.374402 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.24320 -40.50590 -39.61987 -38.41992 -37.52190 -34.57252 -34.05792 -32.26529 -31.80706 -31.01542 -29.48809 -27.33420 -25.39606 -25.23633 -23.91634 -22.99109 -20.76810 -20.33249 -19.11065 -18.19993 -17.45853 -16.95114 -16.64554 -16.55904 -16.19936 -16.02150 -15.75046 -15.55643 -15.29483 -14.81428 -14.68042 -14.27545 -14.18832 -13.65183 -13.52043 -13.40693 -12.90751 -12.61792 -12.46796 -12.36023 -12.26568 -11.96019 -11.71699 -11.61762 -11.18451 -11.08259 -10.58309 -10.36673 -10.23513 -9.83918 -9.57196 -9.38123 -9.28204 -9.14794 -8.83862 -8.54166 -8.01662 -6.45593 -4.56105 0.33535 0.75761 2.50825 2.71465 2.91001 3.11142 3.19998 3.22763 3.40011 3.47403 3.86082 4.13856 4.29161 4.34863 4.60034 4.67372 4.68537 4.81648 4.88353 5.26915 5.39588 5.46968 5.50456 5.56084 5.63754 5.78848 5.82872 5.84573 6.01506 6.11712 6.26244 6.37958 6.40003 6.47119 6.56953 7.00285 7.32658 7.57246 7.73970 7.97736 8.25113 8.45125 8.47284 9.15307 9.38056 10.61263 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.032388 B = 0.002198 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.319294 B =12737.674077 C =13267.365899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.538 4.538 8 H 0.072 0.928 9 C 0.239 3.761 10 O -0.573 6.573 11 C 0.072 3.928 12 N -0.625 5.625 13 C 0.523 3.477 14 O -0.566 6.566 15 C 0.106 3.894 16 N -0.707 5.707 17 C 0.558 3.442 18 O -0.533 6.533 19 C -0.101 4.101 20 C -0.095 4.095 21 C -0.096 4.096 22 C -0.131 4.131 23 C 0.091 3.909 24 F -0.136 7.136 25 C -0.095 4.095 26 C 0.114 3.886 27 H 0.274 0.726 28 H 0.394 0.606 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.411 0.589 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.072 0.928 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 -17.317 7.245 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.195 1.195 6 H -0.209 1.209 7 C -0.576 4.576 8 H 0.090 0.910 9 C 0.198 3.802 10 O -0.386 6.386 11 C -0.050 4.050 12 N -0.358 5.358 13 C 0.312 3.688 14 O -0.448 6.448 15 C -0.021 4.021 16 N -0.362 5.362 17 C 0.345 3.655 18 O -0.410 6.410 19 C -0.104 4.104 20 C -0.114 4.114 21 C -0.114 4.114 22 C -0.150 4.150 23 C 0.071 3.929 24 F -0.115 7.115 25 C -0.115 4.115 26 C -0.008 4.008 27 H 0.085 0.915 28 H 0.250 0.750 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.250 0.750 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.168 0.832 38 H 0.091 0.909 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.216 -17.829 7.347 19.410 hybrid contribution 0.163 1.068 0.217 1.102 sum -2.053 -16.760 7.564 18.502 Atomic orbital electron populations 1.69308 1.06198 1.28321 1.49919 1.25078 0.95035 0.99962 0.92968 0.86312 0.79806 0.81892 0.78405 1.20279 1.19536 1.20879 1.21482 0.93935 0.89857 1.52335 0.90977 1.19826 0.85455 0.91230 0.83727 1.86055 1.45185 1.50627 1.56695 1.24476 1.00465 0.77125 1.02949 1.50116 1.41657 1.04484 1.39512 1.19929 0.83299 0.82328 0.83255 1.90616 1.56778 1.40197 1.57197 1.21031 0.99955 0.82152 0.98969 1.45604 1.42613 1.08118 1.39889 1.18075 0.79663 0.87894 0.79875 1.90807 1.46860 1.55792 1.47579 1.19725 0.99010 0.93126 0.98532 1.21518 0.98357 0.93103 0.98406 1.21000 0.97512 0.95645 0.97267 1.21384 0.96786 1.00235 0.96558 1.17539 0.92037 0.92354 0.90931 1.91527 1.66345 1.90076 1.63506 1.21242 0.98044 0.94253 0.97960 1.23525 0.93778 0.92398 0.91093 0.91536 0.75036 0.89527 0.90947 0.88322 0.88156 0.74975 0.84421 0.84080 0.84208 0.83213 0.90922 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.00 11.09 55.43 0.61 -21.39 16 2 C 0.07 1.74 5.40 -17.82 -0.10 1.64 16 3 Si 0.91 18.90 29.54 -169.99 -5.02 13.87 16 4 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.54 -12.89 8.62 -34.44 -0.30 -13.18 16 8 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.24 5.43 1.44 -90.84 -0.13 5.30 16 10 O -0.57 -14.10 13.48 -35.23 -0.48 -14.57 16 11 C 0.07 1.45 8.01 -2.97 -0.02 1.42 16 12 N -0.63 -12.15 3.61 -178.30 -0.64 -12.79 16 13 C 0.52 9.54 8.13 -10.99 -0.09 9.45 16 14 O -0.57 -11.29 16.40 5.55 0.09 -11.20 16 15 C 0.11 1.61 5.90 -5.19 -0.03 1.58 16 16 N -0.71 -9.63 5.48 -62.43 -0.34 -9.97 16 17 C 0.56 7.74 7.77 -12.33 -0.10 7.65 16 18 O -0.53 -9.02 16.35 5.32 0.09 -8.93 16 19 C -0.10 -1.12 5.87 -104.98 -0.62 -1.74 16 20 C -0.10 -0.82 9.54 -39.18 -0.37 -1.20 16 21 C -0.10 -0.66 10.03 -39.65 -0.40 -1.06 16 22 C -0.13 -0.97 10.02 -39.43 -0.39 -1.36 16 23 C 0.09 0.87 7.29 -39.47 -0.29 0.58 16 24 F -0.14 -1.39 17.26 2.25 0.04 -1.35 16 25 C -0.10 -1.03 9.57 -39.11 -0.37 -1.40 16 26 C 0.11 2.31 8.22 -2.97 -0.02 2.29 16 27 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 28 H 0.39 9.84 6.46 45.56 0.29 10.13 16 29 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 30 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 33 H 0.41 5.14 5.47 -40.82 -0.22 4.92 16 34 H 0.14 1.03 6.40 -52.49 -0.34 0.69 16 35 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 36 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 37 H 0.15 1.66 7.65 -52.49 -0.40 1.26 16 38 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 LS Contribution 347.30 15.07 5.23 5.23 Total: -1.00 -28.50 347.30 -7.24 -35.74 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -3.59 Total: 15.40 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: -3.23 Total: 9.96 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.37 Total: -44.15 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.30 Total: -34.71 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.50 -7.24 -35.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188677705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.945 kcal (2) G-P(sol) polarization free energy of solvation -28.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds