Wall clock time and date at job start Fri Apr 10 2020 14:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 N 1.46509 * 109.47132 * 179.97438 * 15 13 12 17 17 C 1.34778 * 119.99788 * 179.97438 * 16 15 13 18 18 O 1.21548 * 119.99842 * 359.97438 * 17 16 15 19 19 C 1.47847 * 119.99816 * 180.02562 * 17 16 15 20 20 C 1.39600 * 120.13400 * 359.72522 * 19 17 16 21 21 C 1.37946 * 119.90661 * 179.76722 * 20 19 17 22 22 C 1.38341 * 120.16832 * 0.50793 * 21 20 19 23 23 C 1.38550 * 120.27693 * 359.74346 * 22 21 20 24 24 F 1.35092 * 119.95984 * 180.02562 * 23 22 21 25 25 C 1.38221 * 120.08473 * 0.02562 * 23 22 21 26 26 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 29 29 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 30 30 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 31 31 H 1.08994 * 109.47139 * 299.99683 * 15 13 12 32 32 H 1.09001 * 109.47137 * 59.99892 * 15 13 12 33 33 H 0.97001 * 119.99993 * 359.97438 * 16 15 13 34 34 H 1.07998 * 120.04471 * 0.02562 * 20 19 17 35 35 H 1.07996 * 119.91574 * 180.22714 * 21 20 19 36 36 H 1.08006 * 119.86348 * 179.72110 * 22 21 20 37 37 H 1.07997 * 120.08583 * 180.02562 * 25 23 22 38 38 H 1.09001 * 113.77016 * 221.05654 * 26 12 11 39 39 H 1.09005 * 113.86980 * 89.67729 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 7 -0.3388 -7.2047 2.6552 17 6 -1.2206 -7.6345 3.5794 18 8 -1.8587 -6.8307 4.2307 19 6 -1.4108 -9.0837 3.8019 20 6 -0.6827 -10.0094 3.0522 21 6 -0.8604 -11.3604 3.2670 22 6 -1.7657 -11.8003 4.2160 23 6 -2.4959 -10.8881 4.9606 24 9 -3.3779 -11.3248 5.8860 25 6 -2.3232 -9.5318 4.7577 26 6 2.1615 -3.7405 -0.0011 27 1 -0.4850 0.8401 0.0004 28 1 -0.3764 -1.7802 -0.9678 29 1 1.3966 -2.5373 2.2104 30 1 -0.2731 -2.8605 1.5670 31 1 0.1879 -5.3004 3.3596 32 1 -1.0946 -5.3215 2.1255 33 1 0.1707 -7.8461 2.1357 34 1 0.0216 -9.6681 2.3081 35 1 -0.2945 -12.0765 2.6897 36 1 -1.9042 -12.8593 4.3770 37 1 -2.8921 -8.8208 5.3383 38 1 2.1758 -4.2745 -0.9513 39 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188677705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:19 Heat of formation + Delta-G solvation = -118.630782 kcal Electronic energy + Delta-G solvation = -25789.658247 eV Core-core repulsion = 21612.418948 eV Total energy + Delta-G solvation = -4177.239299 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.98938 -41.65221 -41.01602 -39.44830 -38.94926 -35.90393 -35.71454 -34.12074 -32.60730 -31.78740 -30.92084 -28.75880 -27.03432 -26.78668 -24.86553 -23.68690 -21.96981 -21.76315 -20.35063 -19.61697 -19.10089 -18.04098 -17.76425 -17.41675 -17.25002 -17.15353 -17.03413 -16.70211 -16.62041 -16.12839 -16.04256 -15.83803 -15.07835 -14.88157 -14.75915 -14.50835 -14.24120 -14.10324 -13.85411 -13.57197 -13.38977 -13.23070 -13.00960 -12.86806 -12.74962 -12.44167 -12.25197 -12.20090 -11.46089 -11.34433 -11.05248 -10.64824 -10.52018 -10.27751 -10.18354 -9.88045 -9.64256 -8.26493 -6.42865 -0.42058 0.07195 1.41919 1.47149 1.47759 1.52703 1.59924 1.60750 2.12923 2.41284 2.60472 2.96331 3.13370 3.24029 3.46117 3.70596 3.76861 3.94712 4.00084 4.14354 4.17733 4.21927 4.24373 4.42729 4.61158 4.61979 4.73619 4.83817 4.91106 4.92414 4.97892 5.03837 5.11728 5.20112 5.24418 5.72175 5.73982 5.92878 6.26368 6.63025 6.70362 6.87798 6.97082 7.30767 7.46933 8.79341 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.032388 B = 0.002198 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.319294 B =12737.674077 C =13267.365899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.032 3.968 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.286 1.286 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.217 3.783 10 O -0.587 6.587 11 C 0.086 3.914 12 N -0.627 5.627 13 C 0.525 3.475 14 O -0.582 6.582 15 C 0.114 3.886 16 N -0.702 5.702 17 C 0.560 3.440 18 O -0.571 6.571 19 C -0.120 4.120 20 C -0.091 4.091 21 C -0.085 4.085 22 C -0.116 4.116 23 C 0.077 3.923 24 F -0.143 7.143 25 C -0.109 4.109 26 C 0.117 3.883 27 H 0.275 0.725 28 H 0.388 0.612 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.418 0.582 34 H 0.151 0.849 35 H 0.179 0.821 36 H 0.170 0.830 37 H 0.135 0.865 38 H 0.064 0.936 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.038 -19.018 7.400 20.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.169 4.169 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.212 1.212 7 C -0.591 4.591 8 H 0.093 0.907 9 C 0.175 3.825 10 O -0.399 6.399 11 C -0.037 4.037 12 N -0.360 5.360 13 C 0.315 3.685 14 O -0.464 6.464 15 C -0.013 4.013 16 N -0.357 5.357 17 C 0.348 3.652 18 O -0.452 6.452 19 C -0.124 4.124 20 C -0.109 4.109 21 C -0.103 4.103 22 C -0.134 4.134 23 C 0.058 3.942 24 F -0.122 7.122 25 C -0.129 4.129 26 C -0.005 4.005 27 H 0.085 0.915 28 H 0.244 0.756 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.258 0.742 34 H 0.168 0.832 35 H 0.197 0.803 36 H 0.188 0.812 37 H 0.153 0.847 38 H 0.083 0.917 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.163 -19.561 7.500 20.982 hybrid contribution -0.155 1.501 0.132 1.514 sum -1.318 -18.060 7.631 19.651 Atomic orbital electron populations 1.69377 1.07114 1.28889 1.50371 1.25742 0.95730 1.02608 0.92784 0.85406 0.78531 0.78441 0.78351 1.19808 1.19424 1.21155 1.21734 0.94228 0.90686 1.52455 0.90745 1.20136 0.85669 0.91948 0.84723 1.86040 1.45650 1.50387 1.57840 1.24262 1.00444 0.77251 1.01738 1.50066 1.41676 1.04778 1.39487 1.20311 0.83301 0.81542 0.83360 1.90602 1.57443 1.40462 1.57905 1.20904 0.98756 0.83408 0.98219 1.45547 1.42719 1.07457 1.39984 1.18506 0.78712 0.88988 0.78965 1.90780 1.48305 1.57089 1.48992 1.19534 1.00843 0.91714 1.00261 1.21734 0.97719 0.93658 0.97834 1.21422 0.96855 0.95326 0.96688 1.21773 0.95224 1.01326 0.95096 1.17695 0.92702 0.92222 0.91557 1.91508 1.66741 1.90014 1.63918 1.21189 0.98459 0.94935 0.98337 1.23500 0.94440 0.91310 0.91279 0.91481 0.75647 0.88357 0.91227 0.87332 0.88367 0.74186 0.83185 0.80333 0.81217 0.84735 0.91735 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.01 11.09 21.45 0.24 -44.77 16 2 C 0.03 1.52 5.40 84.66 0.46 1.98 16 3 Si 0.97 38.29 29.54 68.60 2.03 40.32 16 4 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 6 H -0.29 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.55 -26.25 8.62 25.60 0.22 -26.03 16 8 H 0.07 3.41 7.81 -2.91 -0.02 3.39 16 9 C 0.22 9.78 1.44 -10.88 -0.02 9.77 16 10 O -0.59 -29.22 13.48 -148.98 -2.01 -31.23 16 11 C 0.09 3.38 8.01 86.48 0.69 4.07 16 12 N -0.63 -23.94 3.61 -840.23 -3.03 -26.97 16 13 C 0.53 18.69 8.13 87.66 0.71 19.40 16 14 O -0.58 -22.54 16.40 -3.04 -0.05 -22.59 16 15 C 0.11 3.42 5.90 85.63 0.51 3.92 16 16 N -0.70 -18.67 5.48 -469.70 -2.57 -21.25 16 17 C 0.56 15.57 7.77 86.79 0.67 16.24 16 18 O -0.57 -19.89 16.35 -3.87 -0.06 -19.96 16 19 C -0.12 -2.61 5.87 -20.09 -0.12 -2.73 16 20 C -0.09 -1.36 9.54 22.53 0.21 -1.15 16 21 C -0.09 -0.85 10.03 22.22 0.22 -0.63 16 22 C -0.12 -1.34 10.02 22.37 0.22 -1.11 16 23 C 0.08 1.39 7.29 22.34 0.16 1.55 16 24 F -0.14 -2.83 17.26 44.97 0.78 -2.05 16 25 C -0.11 -2.38 9.57 22.58 0.22 -2.16 16 26 C 0.12 4.67 8.22 86.48 0.71 5.38 16 27 H 0.28 12.90 8.31 -92.71 -0.77 12.13 16 28 H 0.39 19.80 6.46 -74.06 -0.48 19.32 16 29 H 0.10 3.64 8.09 -2.39 -0.02 3.62 16 30 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.10 3.02 8.14 -2.39 -0.02 3.01 16 33 H 0.42 9.94 5.47 -92.71 -0.51 9.43 16 34 H 0.15 1.84 6.40 -2.91 -0.02 1.82 16 35 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 36 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 37 H 0.13 3.22 7.65 -2.91 -0.02 3.20 16 38 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.11 3.84 8.09 -2.38 -0.02 3.82 16 Total: -1.00 -61.04 347.30 0.33 -60.71 By element: Atomic # 1 Polarization: 39.14 SS G_CDS: 0.14 Total: 39.28 kcal Atomic # 6 Polarization: 23.63 SS G_CDS: 4.88 Total: 28.51 kcal Atomic # 7 Polarization: -87.62 SS G_CDS: -5.37 Total: -92.99 kcal Atomic # 8 Polarization: -71.66 SS G_CDS: -2.12 Total: -73.78 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -61.04 0.33 -60.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188677705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.922 kcal (2) G-P(sol) polarization free energy of solvation -61.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds