Wall clock time and date at job start Fri Apr 10 2020 14:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86806 * 119.99473 * 2 1 4 4 H 1.48502 * 109.47092 * 269.99431 * 3 2 1 5 5 H 1.48494 * 109.47525 * 30.00092 * 3 2 1 6 6 H 1.48508 * 109.46902 * 149.99984 * 3 2 1 7 7 C 1.38649 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99914 * 180.02562 * 7 2 1 9 9 O 1.34832 * 119.99858 * 0.02562 * 7 2 1 10 10 C 1.35756 * 116.99854 * 175.86972 * 9 7 2 11 11 C 1.38875 * 120.06774 * 5.65858 * 10 9 7 12 12 C 1.38097 * 119.92812 * 179.97438 * 11 10 9 13 13 C 1.38299 * 120.07051 * 359.97390 * 12 11 10 14 14 C 1.50703 * 119.93394 * 179.97438 * 13 12 11 15 15 N 1.46901 * 109.46724 * 90.00398 * 14 13 12 16 16 C 1.46466 * 110.99882 * 75.80447 * 15 14 13 17 17 C 1.53250 * 109.79512 * 197.72419 * 16 15 14 18 18 S 1.81895 * 108.50714 * 298.03816 * 17 16 15 19 19 C 1.81894 * 101.91567 * 51.30627 * 18 17 16 20 20 C 1.46336 * 110.87934 * 201.79581 * 15 14 13 21 21 H 1.09000 * 109.36597 * 282.25543 * 20 15 14 22 22 C 1.50697 * 109.44217 * 42.09096 * 20 15 14 23 23 N 1.34776 * 120.00565 * 217.38428 * 22 20 15 24 24 O 1.21286 * 119.99675 * 37.38216 * 22 20 15 25 25 C 1.38304 * 120.13889 * 0.28297 * 13 12 11 26 26 C 1.38097 * 120.06580 * 359.48763 * 25 13 12 27 27 H 0.97002 * 120.00625 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.03882 * 359.95874 * 11 10 9 29 29 H 1.08007 * 119.96830 * 180.02562 * 12 11 10 30 30 H 1.09000 * 109.47038 * 330.01130 * 14 13 12 31 31 H 1.08995 * 109.47467 * 210.00153 * 14 13 12 32 32 H 1.09001 * 109.40765 * 77.65106 * 16 15 14 33 33 H 1.08999 * 109.41214 * 317.80415 * 16 15 14 34 34 H 1.08996 * 109.63174 * 57.74476 * 17 16 15 35 35 H 1.09003 * 109.63220 * 178.13342 * 17 16 15 36 36 H 1.09004 * 109.63588 * 68.39771 * 19 18 17 37 37 H 1.09006 * 109.63485 * 188.79457 * 19 18 17 38 38 H 0.97001 * 119.99551 * 359.97438 * 23 22 20 39 39 H 0.97000 * 120.00286 * 179.97438 * 23 22 20 40 40 H 1.07998 * 119.97069 * 179.71821 * 25 13 12 41 41 H 1.08001 * 120.03725 * 180.25583 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6179 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6528 0.7000 6 1 3.5470 1.4404 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2006 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0715 -3.5053 -0.0860 11 6 3.4583 -3.4401 -0.0511 12 6 4.2049 -4.5986 -0.1388 13 6 3.5731 -5.8227 -0.2609 14 6 4.3909 -7.0848 -0.3570 15 7 4.6286 -7.6180 0.9910 16 6 3.4265 -8.2684 1.5177 17 6 3.5411 -8.4173 3.0386 18 16 4.9698 -9.4805 3.4087 19 6 6.2905 -8.6841 2.4442 20 6 5.7974 -8.4985 1.0050 21 1 5.5247 -9.4679 0.5878 22 6 6.8960 -7.8870 0.1743 23 7 7.6878 -8.6742 -0.5806 24 8 7.0675 -6.6864 0.1849 25 6 2.1923 -5.8904 -0.3013 26 6 1.4399 -4.7361 -0.2093 27 1 -0.4851 0.8400 -0.0004 28 1 3.9524 -2.4845 0.0444 29 1 5.2835 -4.5486 -0.1113 30 1 5.3458 -6.8636 -0.8338 31 1 3.8512 -7.8233 -0.9498 32 1 3.3198 -9.2539 1.0645 33 1 2.5525 -7.6629 1.2779 34 1 3.6868 -7.4371 3.4926 35 1 2.6315 -8.8713 3.4317 36 1 6.5264 -7.7126 2.8786 37 1 7.1800 -9.3141 2.4512 38 1 7.5508 -9.6345 -0.5888 39 1 8.3947 -8.2805 -1.1156 40 1 1.7018 -6.8474 -0.4013 41 1 0.3616 -4.7899 -0.2367 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271438130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:14 Heat of formation + Delta-G solvation = -21.266678 kcal Electronic energy + Delta-G solvation = -24866.958512 eV Core-core repulsion = 21260.154413 eV Total energy + Delta-G solvation = -3606.804098 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.53682 -38.97505 -37.63377 -36.20291 -34.03395 -32.41410 -31.91194 -31.45340 -30.09161 -28.59351 -25.58315 -24.90344 -24.21851 -22.47458 -21.68626 -20.53699 -20.10747 -17.95840 -17.90594 -17.44615 -16.91241 -16.45493 -15.78660 -15.52554 -14.96769 -14.71331 -14.48284 -14.30189 -14.21646 -13.77527 -13.56331 -13.53059 -13.43697 -13.10459 -12.64087 -12.57706 -12.35499 -11.96136 -11.73717 -11.61865 -11.30670 -11.19375 -10.76654 -10.73644 -10.54897 -10.40057 -10.22643 -9.93313 -9.77467 -9.27050 -8.79387 -8.50249 -8.09834 -7.92642 -7.13572 -6.41634 -3.99931 1.49952 2.10741 2.25335 2.32356 2.42619 3.09578 3.16001 3.16788 3.21559 3.70003 4.00355 4.41072 4.56583 4.61735 4.67890 4.74391 4.94197 5.01137 5.10837 5.14545 5.28708 5.34432 5.42205 5.51365 5.60373 5.76987 5.77976 5.87864 5.94405 6.27192 6.42096 6.50590 6.72572 6.76491 6.84337 6.98057 7.03618 7.12526 7.30264 7.50077 7.51113 7.88405 7.96484 8.04184 9.04490 9.74816 10.76545 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.018373 B = 0.003024 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.601142 B = 9255.511982 C = 9831.071766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.157 3.843 11 C -0.235 4.235 12 C -0.042 4.042 13 C -0.175 4.175 14 C 0.106 3.894 15 N -0.525 5.525 16 C 0.056 3.944 17 C -0.075 4.075 18 S -0.265 6.265 19 C -0.066 4.066 20 C 0.072 3.928 21 H 0.068 0.932 22 C 0.521 3.479 23 N -0.856 5.856 24 O -0.509 6.509 25 C -0.071 4.071 26 C -0.195 4.195 27 H 0.269 0.731 28 H 0.125 0.875 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.034 0.966 32 H 0.046 0.954 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.401 0.599 39 H 0.404 0.596 40 H 0.106 0.894 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.249 -21.149 0.900 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.083 6.083 10 C 0.103 3.897 11 C -0.255 4.255 12 C -0.060 4.060 13 C -0.176 4.176 14 C -0.020 4.020 15 N -0.251 5.251 16 C -0.073 4.073 17 C -0.223 4.223 18 S -0.038 6.038 19 C -0.215 4.215 20 C -0.042 4.042 21 H 0.086 0.914 22 C 0.303 3.697 23 N -0.422 5.422 24 O -0.382 6.382 25 C -0.090 4.090 26 C -0.214 4.214 27 H 0.079 0.921 28 H 0.143 0.857 29 H 0.130 0.870 30 H 0.105 0.895 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.229 0.771 39 H 0.235 0.765 40 H 0.124 0.876 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.919 -20.657 2.057 23.938 hybrid contribution 0.504 0.874 -1.402 1.728 sum 12.423 -19.783 0.654 23.369 Atomic orbital electron populations 1.70037 1.05946 1.27600 1.46366 1.25272 0.95826 0.98793 0.96610 0.85725 0.78982 0.80122 0.78706 1.19899 1.20274 1.19154 1.21340 0.91840 0.80837 1.52644 0.89054 1.83969 1.34262 1.11427 1.78593 1.19391 0.90289 0.87963 0.92077 1.21181 0.93723 0.98991 1.11580 1.20656 0.98790 0.91393 0.95205 1.18930 0.92772 0.93407 1.12491 1.21045 1.00193 0.93953 0.86781 1.61062 1.02586 1.35493 1.25920 1.22335 0.93747 0.98149 0.93094 1.23588 0.97458 1.02376 0.98916 1.86819 1.07934 1.42915 1.66120 1.23375 0.98606 1.05029 0.94529 1.21760 0.91535 0.95865 0.95023 0.91419 1.20341 0.82627 0.87270 0.79486 1.43945 1.37331 1.11352 1.49534 1.90826 1.69607 1.14292 1.63474 1.20453 0.92931 0.96401 0.99225 1.20125 0.99357 0.90340 1.11626 0.92080 0.85683 0.87028 0.89495 0.94816 0.93562 0.87969 0.88398 0.87250 0.88002 0.87476 0.77125 0.76517 0.87621 0.86694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.69 13.67 55.48 0.76 -24.93 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.98 29.55 -169.99 -5.02 15.95 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.39 -11.15 9.49 30.88 0.29 -10.86 16 8 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 9 O -0.18 -5.21 9.76 0.02 0.00 -5.21 16 10 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 11 C -0.24 -5.37 9.16 -39.40 -0.36 -5.73 16 12 C -0.04 -0.83 9.69 -39.61 -0.38 -1.22 16 13 C -0.17 -3.06 5.17 -104.57 -0.54 -3.60 16 14 C 0.11 1.48 4.68 -4.97 -0.02 1.46 16 15 N -0.52 -6.57 4.09 -229.97 -0.94 -7.52 16 16 C 0.06 0.61 5.24 -3.93 -0.02 0.59 16 17 C -0.07 -0.78 6.69 37.29 0.25 -0.53 16 18 S -0.27 -2.72 22.39 -107.50 -2.41 -5.12 16 19 C -0.07 -0.63 5.95 37.29 0.22 -0.41 16 20 C 0.07 0.71 2.28 -69.04 -0.16 0.55 16 21 H 0.07 0.54 7.85 -51.93 -0.41 0.13 16 22 C 0.52 5.47 5.57 -10.99 -0.06 5.40 16 23 N -0.86 -5.10 8.87 31.22 0.28 -4.83 16 24 O -0.51 -7.74 15.99 5.55 0.09 -7.65 16 25 C -0.07 -1.26 8.28 -39.61 -0.33 -1.58 16 26 C -0.20 -4.14 9.99 -39.40 -0.39 -4.53 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.13 2.89 5.64 -52.49 -0.30 2.60 16 29 H 0.11 2.17 8.06 -52.48 -0.42 1.74 16 30 H 0.09 1.29 4.84 -51.93 -0.25 1.03 16 31 H 0.03 0.42 7.94 -51.93 -0.41 0.01 16 32 H 0.05 0.45 7.91 -51.93 -0.41 0.04 16 33 H 0.10 1.23 5.51 -51.93 -0.29 0.95 16 34 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.40 1.16 8.78 -40.82 -0.36 0.80 16 39 H 0.40 2.09 8.93 -40.82 -0.36 1.73 16 40 H 0.11 1.51 7.44 -52.49 -0.39 1.12 16 41 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 347.02 15.07 5.23 5.23 Total: -1.00 -33.85 347.02 -9.00 -42.85 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.12 Total: 7.08 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -1.86 Total: -15.86 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.09 Total: -37.27 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -2.72 SS G_CDS: -2.41 Total: -5.12 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.85 -9.00 -42.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271438130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.588 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds