Wall clock time and date at job start Fri Apr 10 2020 14:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86806 * 119.99473 * 2 1 4 4 H 1.48502 * 109.47092 * 269.99431 * 3 2 1 5 5 H 1.48494 * 109.47525 * 30.00092 * 3 2 1 6 6 H 1.48508 * 109.46902 * 149.99984 * 3 2 1 7 7 C 1.38649 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99914 * 180.02562 * 7 2 1 9 9 O 1.34832 * 119.99858 * 0.02562 * 7 2 1 10 10 C 1.35756 * 116.99854 * 175.86972 * 9 7 2 11 11 C 1.38875 * 120.06774 * 5.65858 * 10 9 7 12 12 C 1.38097 * 119.92812 * 179.97438 * 11 10 9 13 13 C 1.38299 * 120.07051 * 359.97390 * 12 11 10 14 14 C 1.50703 * 119.93394 * 179.97438 * 13 12 11 15 15 N 1.46901 * 109.46724 * 90.00398 * 14 13 12 16 16 C 1.46466 * 110.99882 * 75.80447 * 15 14 13 17 17 C 1.53250 * 109.79512 * 197.72419 * 16 15 14 18 18 S 1.81895 * 108.50714 * 298.03816 * 17 16 15 19 19 C 1.81894 * 101.91567 * 51.30627 * 18 17 16 20 20 C 1.46336 * 110.87934 * 201.79581 * 15 14 13 21 21 H 1.09000 * 109.36597 * 282.25543 * 20 15 14 22 22 C 1.50697 * 109.44217 * 42.09096 * 20 15 14 23 23 N 1.34776 * 120.00565 * 217.38428 * 22 20 15 24 24 O 1.21286 * 119.99675 * 37.38216 * 22 20 15 25 25 C 1.38304 * 120.13889 * 0.28297 * 13 12 11 26 26 C 1.38097 * 120.06580 * 359.48763 * 25 13 12 27 27 H 0.97002 * 120.00625 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.03882 * 359.95874 * 11 10 9 29 29 H 1.08007 * 119.96830 * 180.02562 * 12 11 10 30 30 H 1.09000 * 109.47038 * 330.01130 * 14 13 12 31 31 H 1.08995 * 109.47467 * 210.00153 * 14 13 12 32 32 H 1.09001 * 109.40765 * 77.65106 * 16 15 14 33 33 H 1.08999 * 109.41214 * 317.80415 * 16 15 14 34 34 H 1.08996 * 109.63174 * 57.74476 * 17 16 15 35 35 H 1.09003 * 109.63220 * 178.13342 * 17 16 15 36 36 H 1.09004 * 109.63588 * 68.39771 * 19 18 17 37 37 H 1.09006 * 109.63485 * 188.79457 * 19 18 17 38 38 H 0.97001 * 119.99551 * 359.97438 * 23 22 20 39 39 H 0.97000 * 120.00286 * 179.97438 * 23 22 20 40 40 H 1.07998 * 119.97069 * 179.71821 * 25 13 12 41 41 H 1.08001 * 120.03725 * 180.25583 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6179 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6528 0.7000 6 1 3.5470 1.4404 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2006 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0715 -3.5053 -0.0860 11 6 3.4583 -3.4401 -0.0511 12 6 4.2049 -4.5986 -0.1388 13 6 3.5731 -5.8227 -0.2609 14 6 4.3909 -7.0848 -0.3570 15 7 4.6286 -7.6180 0.9910 16 6 3.4265 -8.2684 1.5177 17 6 3.5411 -8.4173 3.0386 18 16 4.9698 -9.4805 3.4087 19 6 6.2905 -8.6841 2.4442 20 6 5.7974 -8.4985 1.0050 21 1 5.5247 -9.4679 0.5878 22 6 6.8960 -7.8870 0.1743 23 7 7.6878 -8.6742 -0.5806 24 8 7.0675 -6.6864 0.1849 25 6 2.1923 -5.8904 -0.3013 26 6 1.4399 -4.7361 -0.2093 27 1 -0.4851 0.8400 -0.0004 28 1 3.9524 -2.4845 0.0444 29 1 5.2835 -4.5486 -0.1113 30 1 5.3458 -6.8636 -0.8338 31 1 3.8512 -7.8233 -0.9498 32 1 3.3198 -9.2539 1.0645 33 1 2.5525 -7.6629 1.2779 34 1 3.6868 -7.4371 3.4926 35 1 2.6315 -8.8713 3.4317 36 1 6.5264 -7.7126 2.8786 37 1 7.1800 -9.3141 2.4512 38 1 7.5508 -9.6345 -0.5888 39 1 8.3947 -8.2805 -1.1156 40 1 1.7018 -6.8474 -0.4013 41 1 0.3616 -4.7899 -0.2367 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271438130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:14 Heat of formation + Delta-G solvation = -47.096039 kcal Electronic energy + Delta-G solvation = -24868.078557 eV Core-core repulsion = 21260.154413 eV Total energy + Delta-G solvation = -3607.924144 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.46094 -40.66300 -38.87155 -37.68513 -34.79149 -34.34973 -32.87474 -32.58838 -31.75394 -29.92948 -27.50501 -25.69963 -25.60110 -23.76838 -22.99321 -22.01187 -20.99022 -19.84091 -18.83675 -18.68162 -18.14317 -17.29710 -16.83060 -16.56324 -16.31657 -16.16918 -15.78543 -15.69346 -15.47033 -15.25616 -14.90713 -14.80447 -14.46397 -14.35880 -14.04191 -13.92003 -13.59775 -13.42589 -12.95270 -12.82864 -12.62047 -12.42496 -12.34901 -12.28766 -12.14065 -12.05415 -11.18455 -11.10561 -10.80405 -10.64516 -10.58769 -9.76401 -9.40217 -8.92151 -8.72313 -8.48307 -6.16034 0.60077 0.65519 0.74250 1.32285 1.33219 1.42206 1.50484 1.62425 2.16832 2.37679 2.68136 2.95006 3.24918 3.51173 3.65157 3.78230 3.90065 3.98101 4.02928 4.12506 4.19157 4.21694 4.27339 4.41147 4.42183 4.58774 4.63522 4.72469 4.78359 4.82881 4.95413 5.08485 5.15085 5.29796 5.55415 5.71692 5.78919 5.84440 5.91311 6.01375 6.03139 6.23240 6.44932 6.96686 7.31863 7.77064 8.74875 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.018373 B = 0.003024 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.601142 B = 9255.511982 C = 9831.071766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.020 4.020 3 Si 1.016 2.984 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.415 4.415 8 H 0.096 0.904 9 O -0.231 6.231 10 C 0.116 3.884 11 C -0.246 4.246 12 C -0.048 4.048 13 C -0.147 4.147 14 C 0.112 3.888 15 N -0.547 5.547 16 C 0.057 3.943 17 C -0.075 4.075 18 S -0.264 6.264 19 C -0.063 4.063 20 C 0.076 3.924 21 H 0.101 0.899 22 C 0.520 3.480 23 N -0.831 5.831 24 O -0.565 6.565 25 C -0.055 4.055 26 C -0.201 4.201 27 H 0.273 0.727 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.127 0.873 36 H 0.076 0.924 37 H 0.134 0.866 38 H 0.419 0.581 39 H 0.410 0.590 40 H 0.154 0.846 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.007 -24.637 0.411 28.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.218 4.218 3 Si 0.835 3.165 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.113 0.887 9 O -0.138 6.138 10 C 0.066 3.934 11 C -0.265 4.265 12 C -0.067 4.067 13 C -0.149 4.149 14 C -0.014 4.014 15 N -0.273 5.273 16 C -0.072 4.072 17 C -0.224 4.224 18 S -0.037 6.037 19 C -0.212 4.212 20 C -0.037 4.037 21 H 0.118 0.882 22 C 0.302 3.698 23 N -0.397 5.397 24 O -0.442 6.442 25 C -0.074 4.074 26 C -0.220 4.220 27 H 0.082 0.918 28 H 0.128 0.872 29 H 0.135 0.865 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.145 0.855 36 H 0.095 0.905 37 H 0.152 0.848 38 H 0.251 0.749 39 H 0.242 0.758 40 H 0.171 0.829 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.723 -24.260 1.555 27.916 hybrid contribution 0.128 1.538 -1.238 1.978 sum 13.851 -22.722 0.317 26.613 Atomic orbital electron populations 1.70169 1.07879 1.28798 1.48882 1.26532 0.96861 1.02548 0.95850 0.84627 0.77751 0.74766 0.79318 1.18687 1.19221 1.18095 1.21771 0.92351 0.81623 1.53323 0.88654 1.83930 1.35664 1.12473 1.81696 1.19919 0.91188 0.88147 0.94142 1.21195 0.93398 0.99606 1.12333 1.20791 0.98951 0.91542 0.95420 1.19459 0.93320 0.94296 1.07793 1.20946 0.99595 0.92657 0.88230 1.60816 1.04057 1.37517 1.24949 1.22363 0.92563 0.98991 0.93244 1.23573 0.98543 1.01517 0.98769 1.86844 1.07902 1.42240 1.66678 1.23387 0.99420 1.04270 0.94123 1.21812 0.90222 0.96486 0.95199 0.88187 1.20493 0.82955 0.86720 0.79599 1.43749 1.36084 1.12132 1.47709 1.90816 1.71222 1.16671 1.65535 1.20886 0.92792 0.96962 0.96719 1.20446 1.00028 0.90304 1.11215 0.91773 0.87195 0.86547 0.89919 0.91833 0.91067 0.89020 0.90699 0.85530 0.90502 0.84832 0.74921 0.75759 0.82885 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.46 13.67 21.61 0.30 -57.16 16 2 C -0.02 -1.19 5.49 84.83 0.47 -0.72 16 3 Si 1.02 44.46 29.55 68.60 2.03 46.49 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 6 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 7 C -0.41 -25.14 9.49 67.92 0.64 -24.50 16 8 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 9 O -0.23 -14.34 9.76 -22.83 -0.22 -14.57 16 10 C 0.12 6.03 6.65 22.58 0.15 6.18 16 11 C -0.25 -11.72 9.16 22.39 0.21 -11.52 16 12 C -0.05 -1.93 9.69 22.25 0.22 -1.71 16 13 C -0.15 -4.87 5.17 -19.83 -0.10 -4.97 16 14 C 0.11 2.73 4.68 85.56 0.40 3.13 16 15 N -0.55 -11.97 4.09 -881.49 -3.61 -15.57 16 16 C 0.06 1.04 5.24 86.47 0.45 1.49 16 17 C -0.08 -1.39 6.69 72.07 0.48 -0.91 16 18 S -0.26 -4.65 22.39 -56.49 -1.27 -5.91 16 19 C -0.06 -1.02 5.95 72.07 0.43 -0.59 16 20 C 0.08 1.22 2.28 44.36 0.10 1.32 16 21 H 0.10 1.02 7.85 -2.39 -0.02 1.00 16 22 C 0.52 9.40 5.57 87.66 0.49 9.89 16 23 N -0.83 -6.84 8.87 -173.53 -1.54 -8.38 16 24 O -0.56 -16.44 15.99 -3.05 -0.05 -16.49 16 25 C -0.06 -1.81 8.28 22.25 0.18 -1.63 16 26 C -0.20 -8.57 9.99 22.39 0.22 -8.34 16 27 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 28 H 0.11 5.45 5.64 -2.91 -0.02 5.43 16 29 H 0.12 4.55 8.06 -2.91 -0.02 4.52 16 30 H 0.08 2.20 4.84 -2.39 -0.01 2.18 16 31 H 0.06 1.22 7.94 -2.39 -0.02 1.20 16 32 H 0.07 0.98 7.91 -2.39 -0.02 0.96 16 33 H 0.09 1.87 5.51 -2.39 -0.01 1.85 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.42 0.46 8.78 -92.71 -0.81 -0.35 16 39 H 0.41 2.96 8.93 -92.71 -0.83 2.14 16 40 H 0.15 3.63 7.44 -2.91 -0.02 3.61 16 41 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -80.18 347.02 -0.57 -80.75 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -0.55 Total: 23.73 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 4.34 Total: -32.89 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -4.85 Total: -81.12 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.27 Total: -31.05 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: -4.65 SS G_CDS: -1.27 Total: -5.91 kcal Total: -80.18 -0.57 -80.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271438130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.657 kcal (2) G-P(sol) polarization free energy of solvation -80.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds