Wall clock time and date at job start Fri Apr 10 2020 14:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00332 * 2 1 4 4 H 1.48503 * 109.47414 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47303 * 299.99744 * 3 2 1 6 6 H 1.48506 * 109.47100 * 59.99681 * 3 2 1 7 7 C 1.37876 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00350 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99847 * 0.02562 * 7 2 1 10 10 O 1.42904 * 110.91693 * 297.54799 * 9 7 2 11 11 C 1.55162 * 111.00461 * 173.64780 * 9 7 2 12 12 C 1.54328 * 102.94192 * 206.42271 * 11 9 7 13 13 N 1.47020 * 107.26937 * 22.19069 * 12 11 9 14 14 C 1.34779 * 125.64422 * 181.03625 * 13 12 11 15 15 O 1.21363 * 119.99576 * 180.02562 * 14 13 12 16 16 C 1.49340 * 120.00057 * 0.02680 * 14 13 12 17 17 O 1.21376 * 120.00628 * 0.02562 * 16 14 13 18 18 N 1.34782 * 119.99949 * 179.97438 * 16 14 13 19 19 C 1.39809 * 119.99906 * 175.37817 * 18 16 14 20 20 C 1.38915 * 120.04864 * 214.82304 * 19 18 16 21 21 C 1.38095 * 119.94699 * 179.81616 * 20 19 18 22 22 C 1.38492 * 120.04935 * 0.44849 * 21 20 19 23 23 F 1.35096 * 119.95296 * 179.77087 * 22 21 20 24 24 C 1.38496 * 120.10355 * 359.78365 * 22 21 20 25 25 C 1.38094 * 120.04560 * 0.02562 * 24 22 21 26 26 C 1.47418 * 108.70518 * 1.05981 * 13 12 11 27 27 H 0.97001 * 119.99423 * 0.02562 * 1 2 3 28 28 H 0.96697 * 113.99792 * 62.45003 * 10 9 7 29 29 H 1.09001 * 110.72048 * 88.06164 * 11 9 7 30 30 H 1.08997 * 110.87329 * 324.85563 * 11 9 7 31 31 H 1.08996 * 109.87734 * 262.77374 * 12 11 9 32 32 H 1.09000 * 109.88090 * 141.60821 * 12 11 9 33 33 H 0.97000 * 119.99886 * 355.39210 * 18 16 14 34 34 H 1.07993 * 120.02982 * 0.02562 * 20 19 18 35 35 H 1.08001 * 119.97694 * 180.23083 * 21 20 19 36 36 H 1.07995 * 119.97871 * 179.97438 * 24 22 21 37 37 H 1.07999 * 120.02237 * 179.97438 * 25 24 22 38 38 H 1.09009 * 110.36764 * 94.70995 * 26 13 12 39 39 H 1.09000 * 110.36638 * 217.02870 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 8 0.4607 -2.6320 1.1838 11 6 2.2196 -3.7007 -0.1591 12 6 1.3272 -4.7804 -0.8067 13 7 0.2070 -4.0870 -1.4592 14 6 -0.8058 -4.6809 -2.1212 15 8 -1.6806 -4.0061 -2.6235 16 6 -0.8515 -6.1691 -2.2366 17 8 0.0231 -6.8440 -1.7339 18 7 -1.8645 -6.7629 -2.8982 19 6 -1.8576 -8.1478 -3.0899 20 6 -2.3761 -8.6909 -4.2586 21 6 -2.3647 -10.0588 -4.4474 22 6 -1.8454 -10.8897 -3.4686 23 9 -1.8395 -12.2279 -3.6533 24 6 -1.3324 -10.3508 -2.3005 25 6 -1.3381 -8.9832 -2.1091 26 6 0.3752 -2.6348 -1.2700 27 1 -0.4849 0.8401 -0.0004 28 1 -0.2256 -1.9571 1.2762 29 1 2.5843 -4.0337 0.8126 30 1 3.0518 -3.4442 -0.8146 31 1 0.9487 -5.4569 -0.0404 32 1 1.8995 -5.3390 -1.5473 33 1 -2.5983 -6.2294 -3.2415 34 1 -2.7846 -8.0437 -5.0205 35 1 -2.7643 -10.4813 -5.3575 36 1 -0.9283 -11.0006 -1.5384 37 1 -0.9383 -8.5634 -1.1979 38 1 0.8831 -2.1965 -2.1293 39 1 -0.5927 -2.1576 -1.1164 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592301506.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:25 Heat of formation + Delta-G solvation = -123.036306 kcal Electronic energy + Delta-G solvation = -26659.930707 eV Core-core repulsion = 22482.500370 eV Total energy + Delta-G solvation = -4177.430337 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.08475 -41.02716 -39.43133 -38.15304 -37.32228 -35.09929 -34.16799 -32.30906 -31.44268 -30.34048 -29.57133 -27.98577 -26.03777 -24.35264 -23.52501 -22.71447 -21.53990 -19.94828 -19.64711 -18.15081 -17.76734 -17.33188 -17.22968 -16.37973 -16.28426 -15.78283 -15.71843 -15.21811 -14.79028 -14.64191 -14.38836 -14.36785 -13.84208 -13.47060 -13.26252 -13.14594 -13.02702 -12.90501 -12.65524 -12.39967 -11.74126 -11.62601 -11.47686 -11.17272 -11.11280 -10.87251 -10.67489 -10.50760 -10.46141 -10.26750 -9.48005 -9.44501 -9.26453 -8.77191 -8.50026 -8.34399 -8.01717 -6.35561 -4.44992 0.71425 0.94658 1.62610 2.37498 3.15645 3.23179 3.25092 3.28441 3.47768 3.67402 4.03159 4.21042 4.41429 4.52288 4.57175 4.92129 4.92703 5.04349 5.24096 5.39719 5.60431 5.70636 5.74527 5.81810 5.92043 5.94871 5.98232 6.07913 6.21590 6.43192 6.61608 6.66037 6.68093 6.75661 6.95293 7.10773 7.23531 7.62788 7.66771 7.87928 7.93564 8.25749 8.59732 9.21864 9.30596 10.71719 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.036536 B = 0.002568 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.192374 B =10902.467614 C =11318.255179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.069 0.931 9 C 0.248 3.752 10 O -0.581 6.581 11 C -0.121 4.121 12 C 0.109 3.891 13 N -0.570 5.570 14 C 0.510 3.490 15 O -0.534 6.534 16 C 0.512 3.488 17 O -0.495 6.495 18 N -0.651 5.651 19 C 0.138 3.862 20 C -0.114 4.114 21 C -0.134 4.134 22 C 0.079 3.921 23 F -0.142 7.142 24 C -0.133 4.133 25 C -0.093 4.093 26 C 0.091 3.909 27 H 0.270 0.730 28 H 0.381 0.619 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.424 0.576 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.151 0.849 38 H 0.070 0.930 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.180 -16.025 -6.773 17.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.208 3.792 10 O -0.389 6.389 11 C -0.159 4.159 12 C -0.014 4.014 13 N -0.302 5.302 14 C 0.291 3.709 15 O -0.413 6.413 16 C 0.295 3.705 17 O -0.368 6.368 18 N -0.298 5.298 19 C 0.044 3.956 20 C -0.134 4.134 21 C -0.154 4.154 22 C 0.060 3.940 23 F -0.121 7.121 24 C -0.152 4.152 25 C -0.113 4.113 26 C -0.029 4.029 27 H 0.080 0.920 28 H 0.231 0.769 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.263 0.737 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.169 0.831 38 H 0.088 0.912 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.777 -16.535 -6.602 18.201 hybrid contribution -0.346 1.395 -0.428 1.500 sum -4.123 -15.140 -7.030 17.194 Atomic orbital electron populations 1.69712 1.06007 1.27922 1.49571 1.25095 0.95074 0.99864 0.93260 0.86327 0.80078 0.82595 0.77790 1.19539 1.20765 1.20718 1.21491 0.93774 0.89830 1.52334 0.91280 1.19647 0.86559 0.91953 0.81061 1.86133 1.51484 1.57112 1.44202 1.22710 0.97597 0.95074 1.00528 1.22200 0.87338 0.95295 0.96560 1.48689 1.21957 1.10688 1.48863 1.19259 0.83097 0.86966 0.81541 1.90754 1.37636 1.64861 1.48045 1.20674 0.81420 0.89925 0.78486 1.90734 1.37159 1.65420 1.43511 1.43192 1.24696 1.05780 1.56149 1.17810 1.00799 0.82710 0.94292 1.20808 1.02117 0.94769 0.95743 1.20909 1.02017 0.92946 0.99492 1.17723 1.02797 0.77265 0.96255 1.91492 1.94709 1.30296 1.95554 1.21080 1.01411 0.95656 0.97078 1.21247 0.98904 0.91788 0.99329 1.23559 1.03375 0.75277 1.00730 0.91979 0.76896 0.90442 0.90258 0.91037 0.91592 0.73740 0.84347 0.84283 0.84262 0.83101 0.91213 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.88 10.69 55.43 0.59 -22.29 16 2 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 3 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.54 -13.42 8.27 -34.44 -0.28 -13.71 16 8 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 9 C 0.25 5.77 0.87 -89.62 -0.08 5.70 16 10 O -0.58 -14.25 13.16 -35.23 -0.46 -14.71 16 11 C -0.12 -2.36 6.13 -24.89 -0.15 -2.51 16 12 C 0.11 1.97 5.49 -3.06 -0.02 1.95 16 13 N -0.57 -11.39 3.33 -171.07 -0.57 -11.96 16 14 C 0.51 9.54 7.91 -11.64 -0.09 9.45 16 15 O -0.53 -10.93 16.74 5.49 0.09 -10.83 16 16 C 0.51 7.96 7.70 -11.63 -0.09 7.87 16 17 O -0.50 -8.11 11.55 5.47 0.06 -8.04 16 18 N -0.65 -8.00 5.32 -10.29 -0.05 -8.06 16 19 C 0.14 1.56 6.30 -83.72 -0.53 1.03 16 20 C -0.11 -1.02 9.97 -39.38 -0.39 -1.41 16 21 C -0.13 -1.17 10.02 -39.54 -0.40 -1.56 16 22 C 0.08 0.80 7.30 -39.39 -0.29 0.51 16 23 F -0.14 -1.50 17.26 2.25 0.04 -1.46 16 24 C -0.13 -1.35 10.02 -39.54 -0.40 -1.74 16 25 C -0.09 -1.07 8.70 -39.39 -0.34 -1.41 16 26 C 0.09 2.07 5.38 -2.53 -0.01 2.06 16 27 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 28 H 0.38 9.54 7.57 45.56 0.34 9.89 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.08 1.44 8.04 -51.93 -0.42 1.03 16 31 H 0.07 1.29 7.58 -51.93 -0.39 0.90 16 32 H 0.07 1.10 7.69 -51.93 -0.40 0.70 16 33 H 0.42 4.53 8.30 -40.82 -0.34 4.20 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.15 1.90 6.22 -52.49 -0.33 1.58 16 38 H 0.07 1.62 8.03 -51.92 -0.42 1.20 16 39 H 0.09 2.33 7.33 -51.93 -0.38 1.95 16 LS Contribution 337.41 15.07 5.08 5.08 Total: -1.00 -27.88 337.41 -6.96 -34.84 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -3.56 Total: 14.81 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -3.16 Total: 7.90 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -0.03 Total: -42.30 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -0.31 Total: -33.59 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.88 -6.96 -34.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592301506.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.193 kcal (2) G-P(sol) polarization free energy of solvation -27.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds